Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007117

Physical Location & Seq

Genomic Coordinates Reverse (-)

54872193 .. 54887398

Gene Structure 15206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

ATGAGCAACAATGGCAAAACCCGAAAACGGCCGGCACCGCCGCAGCAGCCGTCGCCGGTGAACCCACCACCGCCCAAGCAGCGCGCCGCGTCTCAAGAAGAAGAGGAATTTCTCGACGAGGACGTCTTCCTCGACGAAACCCTACTCGAGACCGAAGAAGACCTCATTCTCCGCGACAGCGAGCAGCGCCAATCCCTCGCCTCCCGCGTCGCCAGGTGGGCCCGCCCACCTCTCTCCGATGCCTACAAGTCGGCCTCCAAAAGCATCCTGTTTCAGCAATTGGAGATTGACTATGTGATTGGAGAGAGCAATAGAGAATTGTTGCCTAATTGGTCCGGTCCTGCTGCCATTATCAGAATATTTGGGGTTACAAAGGAAGGACATAGTGTTTGCTGCCACGTTCATGGATTCGAGCCATATTTCTATATCAACTGCCCTCCAGGGATGGGACATGATGATATTCCTCGGTTTCGTCAGATTCTCGAGGCGAAGATGGGGGAGGCAAACAGGAACAATAAGGCATCAATGTTCATTCGACGTGTTGAAATGGTGTACAAGAGGAATATAATGTATTACCAGCAGCAGGATTCCAATCCCTTTCTCAAAATTGTTGTTTCTTTGCCAACAATGGTGGCCCGCTGCCGGGGTATTCTTGATAAAGGCATACAAATTGACGGTGTTGGTGAGAAGAGCTTCATGACATATGAAAGCAATGTTCTGTTTGCTCTTCGATTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAGGTACCTGCCGGAAAGTATAAGACAGCAAAGAGTACATCGTACTGCCAATTAGAGTTCAATTGCTTATATTCAGACTTAATCAGCCATGCTCCTGAAGGTGAATTTTCAAAGATGGCTCCGTTTCGCATTTTAAGCTTTGACATTGAGTGTGCTGGACGCAAAGGTCATTTTCCTGATGCCAAGCATGATCCTGTCATCCAGGTGGCCAACCTAGTTACTTTGCAGGGAGAGAATCAGCCATTTATTCGTAATGTTATGACTCTTAAGTCATGCTCCCCTATAGCTGGTGCTGATGTGATTTCCTTTGATACAGAAAGAAAAGTCTTGCTGGCTTGGAGGGATTTAATCCGTGAGGCAGACCCAGATGTCATAATTGGATATAACATCTGTAAATTTGATTTGCCATATCTCATTGAGAGAGCTGAAACTTTGGGAATACCTGAATTTCCAATACTTGGGCGCATCAGAAACAGCAGGGTTCGGGTCAAAGACACTACTTTTTCTTCAAGGCAGATGGGAACCAGGGAAAGTAAAGAAGTAACAATTGAAGGGAGGGTTCAATTTGATATACTCCAGGTTATGCAACGGGATTATAAATTAAGCTCATATTCATTGAATTCTGTCTCAGCACACTTTCTTTCTGAGCAGAAAGAGGACGTCCACCATTCCATAATATCTGATCTTCAGAATGGCAATGCGGAAACTAGGAGGCGACTTGCTGAGTATTGTCTGAAGGATGCTTACCTCCCGCAGAGGCTTTTGGACAAACTTATGTTTATTTACAATTATGTAGAGATGGCTCGAGTCACCGGTGTTCCCATCTCATTTCTACTTTCCAGAGGGCAGAGCATCAAGGTGCTTTCTCAACTTCTTAGGAAGGCTAAACAAAAGAACCTTCTCCTTCCAAATGTCAAACAGGCTGGATCTGAACAAGGAACATATGAAGGTGCCACTGTTTTGGAAGCAAAGGCAGGATTTTATGAAAAGCCAATTGCAACTTTGGATTTTGCATCCCTATACCCCTCAATCATGATGGCTTATAATCTATGCTATTGCACCCTGGTACGATCTGAAGATGTACGCAAACTCAACCTTCCTCCAGAATGTGTGAACAAAACTCCATCTGGAGAAACATTTGTTAAACCAAATTTGCAAAAGGGAATTCTTCCTGAAATTCTTGAAGAACTACTAGCTGCTCGGAAGAGAGCAAAAGCGGATTTAAAGGAAGCAAAGGATCCACTTGAGAAGGCAGTGCTAGATGGTCGACAATTGGCCTTAAAGATAAGTGCAAATTCTGTATATGGGTTTACTGGAGCTACAATTGGTCAGTTACCATGTTTGGAGATATCATCAAGTGTCACGAGCTATGGTCGACAGATGATTGAGCACACAAAAAACCTTGTAAAAGAAAAATTTACTACTCTTGGAGGCTATGAACATAATGCTGAGGTAATATATGGGGACACAGATTCAGTTATGGTGCAATTCGGTGTAAGTACTGTTGAAGCAGCAATGGAATTGGGAAGAGAAGCTGCTGATGCTATCAGTGCCACGTTCACAAAGCCTATCAAACTCGAGTTTGAGAAAGTTTATTATCCATATCTTCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAATCCAGAGAAGTTCGACAAAATGGATACTAAAGGCATTGAAACAGTACGAAGAGACAATTGCTTATTGGTAAAAAACCTGGTAAATGAGTGCTTGCACAAAATACTGATTGACAGAGATATTCCTGGGGCAGTCCAATTTGTTAAGAACACTATATCTGATCTTCTTATGAACCGCATGGATTTGTCACTCTTGGTTATCACTAAGGGTCTGTCAAAAACTGGGGAGGATTATGGAGTAAAGGCAGCTCATGTTGAACTTGCTGAGCGTATGCGCAAGCTTCTTGACTGTGAAACAAGTTATTCCATCTCTTATCAACTCTTGCTCATTTTCATTTGTCAGCGAGATGCTGCCACTGCTCCAACAGTTGGGGATCGGGTACCATATGTCATTATCAAAGCCGCAAAAGGTGCCAAGGCTTATGAGAGGTCAGAGGACCCCATCTATGTGCTCGAGAATAACATTCCTATAGACCCTCAATATTATCTTGAAAACCAAATCAGCAAGCCACTCTTAAGAATTTTTGAGCCTATTTTGAAGAATGCCAGCTCGGAACTTCTCCATGGAAGTCATACAAGATCTATTTCAATGCCTACTCCCTCCAACAGTGGCATAATGAGATTTGCAAAGAAACAACTCACTTGCCTTGGTTGTAAAACTCCAATTAGCAATTCAGACAGAACTCTGTGCTCACACTGTAAGGGAAGAGAAGCTGAACTTTACTGCAAAACTGTGGCTCATGTTTCTGAGCTGGAGACTCTTTTTGCACGTTTATGGACACAGTGCCAGGAGTGCCAAGGTTCACTTCATCAAGATGTGCTCTGCACAAGGTTGGCCAATTTCATCCATTTGAGTGACTTCCGCTGCTCCGTTATTAGTTCTCTGTTGGGAATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006287 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008408 GO:0009058 GO:0009059 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0034645 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045004 GO:0045005 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 zf-C4pol

Protein Analysis

1105

Amino Acids

124.61

Weight (kDa)

8.07

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POL3_N	PF24055	136 - 211	2.7e-06	DNA polymerase delta catalytic subunit-like, N-terminal domain
DNA_pol_B_exo1	PF03104	234 - 466	7.1e-71	DNA polymerase family B, exonuclease domain
DNA_pol_B_2	PF03175	472 - 622	5.7e-06	DNA polymerase type B, organellar and viral
DNA_pol_B	PF00136	530 - 984	6.1e-155	DNA polymerase family B
zf-C4pol	PF14260	1021 - 1083	1.8e-11	C4-type zinc-finger of DNA polymerase delta

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63960 AT5G63960
fragaria_vesca	FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660
malus_domestica	MD00G1053300.v1.1 MD05G1053800.v1.1 MD07G1029900.v1.1
prunus_persica	Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1
pyrus_communis	pycom01g00060 pycom07g02190
rosa_chinensis	RchiOBHm_Chr2g0122111
rosa_laevigata	RLG00000018650
rosa_multiflora	Rmu_co8081762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122010
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh2AG293000 Rh2BG303400 Rh2CG281900 Rh2DG317000
rosa_wichuraiana	Rw2G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1368, 1815
AasI	GACNNNNNNGTC	4 cut(s)	122, 936, 1039, 1139
AatII	GACGTC	2 cut(s)	126, 1434
Acc16I	TGCGCA	1 cut(s)	2693
Acc36I	ACCTGC	1 cut(s)	787
Acc65I	GGTACC	2 cut(s)	775, 2797
AccB1I	GGYRCC	5 cut(s)	34, 775, 1721, 2797, 2828
AccB7I	CCANNNNNTGG	2 cut(s)	1229, 2786
AccI	GTMKAC	2 cut(s)	2038, 2146
AccII	CGCG	4 cut(s)	84, 89, 174, 207
AclWI	GGATC	5 cut(s)	956, 1705, 2003, 2016, 2799
AcoI	YGGCCR	3 cut(s)	29, 978, 3252
AcuI	CTGAAG	4 cut(s)	888, 1442, 1526, 1866
AcyI	GRCGYC	2 cut(s)	123, 1431
AfaI	GTAC	9 cut(s)	554, 777, 808, 815, 1839, 1854, 2272, 2466, 2799
AfiI	CCNNNNNNNGG	8 cut(s)	27, 446, 583, 642, 643, 1058, 1229, 2786
AflII	CTTAAG	2 cut(s)	1037, 2932
AflIII	ACRYGT	1 cut(s)	538
AgeI	ACCGGT	1 cut(s)	1583
AjiI	CACGTC	1 cut(s)	539
AjnI	CCWGG	9 cut(s)	212, 439, 972, 1295, 1347, 1833, 2496, 2542, 3204
AjuI	GAANNNNNNNTTGG	4 cut(s)	3073, 3105, 3207, 3239
Alw21I	GWGCWC	4 cut(s)	2163, 2871, 3110, 3240
Alw26I	GTCTC	5 cut(s)	96, 143, 1402, 2466, 3167
AlwI	GGATC	5 cut(s)	956, 1705, 2003, 2016, 2799
Ama87I	CYCGRG	5 cut(s)	146, 482, 1575, 2348, 2870
AoxI	GGCC	7 cut(s)	29, 219, 252, 633, 978, 2046, 3252
ApaI	GGGCCC	1 cut(s)	223
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AsiGI	ACCGGT	1 cut(s)	1583
Asp700I	GAANNNNTTC	1 cut(s)	692
Asp718I	GGTACC	2 cut(s)	775, 2797
AspLEI	GCGC	5 cut(s)	84, 86, 189, 1236, 2694
AspS9I	GGNCC	6 cut(s)	219, 220, 333, 338, 634, 2854
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	4 cut(s)	70, 695, 884, 1573
AvaI	CYCGRG	5 cut(s)	146, 482, 1575, 2348, 2870
AvaII	GGWCC	3 cut(s)	333, 338, 2854
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	2 cut(s)	980, 3254
BamHI	GGATCC	1 cut(s)	2008
BanI	GGYRCC	5 cut(s)	34, 775, 1721, 2797, 2828
BanII	GRGCYC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	1499, 1531
BauI	CACGAG	1 cut(s)	2134
BbsI	GAAGAC	2 cut(s)	118, 165
Bbv12I	GWGCWC	4 cut(s)	2163, 2871, 3110, 3240
BbvCI	CCTCAGC	1 cut(s)	2220
BceAI	ACGGC	2 cut(s)	34, 44
BciT130I	CCWGG	9 cut(s)	214, 441, 974, 1297, 1349, 1835, 2498, 2544, 3206
BciVI	GTATCC	1 cut(s)	2437
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	5 cut(s)	96, 143, 1402, 2466, 3167
BfaI	CTAG	4 cut(s)	986, 1479, 1964, 2030
BfmI	CTRYAG	2 cut(s)	1053, 2886
BfoI	RGCGCY	1 cut(s)	190
BfrI	CTTAAG	2 cut(s)	1037, 2932
BfuAI	ACCTGC	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	2437
BglI	GCCNNNNNGGC	1 cut(s)	218
BglII	AGATCT	1 cut(s)	2996
BlpI	GCTNAGC	1 cut(s)	2682
BmcAI	AGTACT	1 cut(s)	2272
Bme18I	GGWCC	3 cut(s)	333, 338, 2854
BmeT110I	CYCGRG	5 cut(s)	146, 482, 1575, 2348, 2870
BmgBI	CACGTC	1 cut(s)	539
BmgT120I	GGNCC	6 cut(s)	219, 220, 333, 338, 634, 2854
BmrI	ACTGGG	1 cut(s)	2649
BmuI	ACTGGG	1 cut(s)	2649
BpiI	GAAGAC	2 cut(s)	118, 165
BpmI	CTGGAG	6 cut(s)	423, 1331, 1857, 1920, 2106, 3191
Bpu10I	CCTNAGC	1 cut(s)	2220
Bpu1102I	GCTNAGC	1 cut(s)	2682
BpuEI	CTTGAG	2 cut(s)	78, 2036
BpuMI	CCSGG	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	2 cut(s)	123, 1431
BsaI	GGTCTC	1 cut(s)	143
BsaWI	WCCGGW	2 cut(s)	335, 1583
Bsc4I	CCNNNNNNNGG	8 cut(s)	27, 446, 583, 642, 643, 1058, 1229, 2786
Bse118I	RCCGGY	3 cut(s)	31, 55, 1583
Bse1I	ACTGG	2 cut(s)	2089, 2644
Bse3DI	GCAATG	3 cut(s)	718, 1474, 2292
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	9 cut(s)	214, 441, 974, 1297, 1349, 1835, 2498, 2544, 3206
BseGI	GGATG	6 cut(s)	264, 450, 969, 1516, 1784, 3261
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	8 cut(s)	27, 446, 583, 642, 643, 1058, 1229, 2786
BseMI	GCAATG	3 cut(s)	718, 1474, 2292
BseMII	CTCAG	6 cut(s)	1407, 1413, 1485, 2211, 2673, 3156
BseNI	ACTGG	2 cut(s)	2089, 2644
BsePI	GCGCGC	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	3226
Bsh1236I	CGCG	4 cut(s)	84, 89, 174, 207
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	7 cut(s)	31, 221, 254, 635, 980, 2048, 3254
BshNI	GGYRCC	5 cut(s)	34, 775, 1721, 2797, 2828
BshTI	ACCGGT	1 cut(s)	1583
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	4 cut(s)	2163, 2871, 3110, 3240
BsiHKCI	CYCGRG	5 cut(s)	146, 482, 1575, 2348, 2870
BsiSI	CCGG	6 cut(s)	32, 56, 336, 643, 783, 1584
BslFI	GGGAC	2 cut(s)	462, 2249
BslI	CCNNNNNNNGG	8 cut(s)	27, 446, 583, 642, 643, 1058, 1229, 2786
BsmAI	GTCTC	5 cut(s)	96, 143, 1402, 2466, 3167
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	462, 2249
BsmI	GAATGC	1 cut(s)	2965
BsnI	GGCC	7 cut(s)	31, 221, 254, 635, 980, 2048, 3254
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	5 cut(s)	146, 482, 1575, 2348, 2870
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	5 cut(s)	223, 2163, 2871, 3110, 3240
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
Bsp1720I	GCTNAGC	1 cut(s)	2682
Bsp19I	CCATGG	1 cut(s)	2980
BspANI	GGCC	7 cut(s)	31, 221, 254, 635, 980, 2048, 3254
BspCNI	CTCAG	6 cut(s)	1408, 1412, 1486, 2212, 2674, 3157
BspFNI	CGCG	4 cut(s)	84, 89, 174, 207
BspHI	TCATGA	3 cut(s)	696, 735, 1803
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	5 cut(s)	956, 1705, 2003, 2016, 2799
BspQI	GCTCTTC	2 cut(s)	683, 732
BspT107I	GGYRCC	5 cut(s)	34, 775, 1721, 2797, 2828
BspTI	CTTAAG	2 cut(s)	1037, 2932
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	3 cut(s)	718, 1474, 2292
BsrFI	RCCGGY	3 cut(s)	31, 55, 1583
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	2089, 2644
BssAI	RCCGGY	3 cut(s)	31, 55, 1583
BssHII	GCGCGC	1 cut(s)	82
BssMI	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
BssNI	GRCGYC	2 cut(s)	123, 1431
BssSI	CACGAG	1 cut(s)	2134
BssT1I	CCWWGG	4 cut(s)	2832, 2980, 3064, 3214
Bst2BI	CACGAG	1 cut(s)	2134
Bst2UI	CCWGG	9 cut(s)	214, 441, 974, 1297, 1349, 1835, 2498, 2544, 3206
Bst6I	CTCTTC	8 cut(s)	96, 683, 732, 1970, 2293, 2387, 2464, 3118
BstACI	GRCGYC	2 cut(s)	123, 1431
BstAFI	CTTAAG	2 cut(s)	1037, 2932
BstAPI	GCANNNNNTGC	1 cut(s)	2828
BstAUI	TGTACA	1 cut(s)	552
BstDEI	CTNAG	9 cut(s)	1399, 1416, 1494, 1646, 2220, 2622, 2682, 3165, 3315
BstDSI	CCRYGG	1 cut(s)	2980
BstF5I	GGATG	6 cut(s)	264, 450, 969, 1516, 1784, 3261
BstFNI	CGCG	4 cut(s)	84, 89, 174, 207
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	5 cut(s)	84, 86, 189, 1236, 2694
BstKTI	GATC	8 cut(s)	964, 1456, 1700, 1844, 2011, 2581, 2794, 2999
BstMAI	GTCTC	5 cut(s)	96, 143, 1402, 2466, 3167
BstMBI	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
BstMCI	CGRYCG	1 cut(s)	32
BstNI	CCWGG	9 cut(s)	214, 441, 974, 1297, 1349, 1835, 2498, 2544, 3206
BstSFI	CTRYAG	2 cut(s)	1053, 2886
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	4 cut(s)	84, 89, 174, 207
BstV2I	GAAGAC	2 cut(s)	118, 165
BstX2I	RGATCY	3 cut(s)	1697, 2008, 2996
BstXI	CCANNNNNNTGG	2 cut(s)	404, 1732
BstYI	RGATCY	3 cut(s)	1697, 2008, 2996
BstZI	CGGCCG	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	2437
BsuRI	GGCC	7 cut(s)	31, 221, 254, 635, 980, 2048, 3254
BtgI	CCRYGG	1 cut(s)	2980
BtrI	CACGTC	1 cut(s)	539
BtsCI	GGATG	6 cut(s)	264, 450, 969, 1516, 1784, 3261
BtsI	GCAGTG	2 cut(s)	2031, 2772
BtsIMutI	CAGTG	7 cut(s)	1725, 2031, 2326, 2772, 3031, 3112, 3206
BveI	ACCTGC	1 cut(s)	787
CciI	TCATGA	3 cut(s)	696, 735, 1803
CfoI	GCGC	5 cut(s)	84, 86, 189, 1236, 2694
Cfr10I	RCCGGY	3 cut(s)	31, 55, 1583
Cfr13I	GGNCC	6 cut(s)	219, 220, 333, 338, 634, 2854
CseI	GACGC	3 cut(s)	78, 196, 939
CsiI	ACCWGGT	1 cut(s)	2496
Csp6I	GTAC	9 cut(s)	553, 776, 807, 814, 1838, 1853, 2271, 2465, 2798
CspAI	ACCGGT	1 cut(s)	1583
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	9 cut(s)	553, 776, 807, 814, 1838, 1853, 2271, 2465, 2798
DdeI	CTNAG	9 cut(s)	1399, 1416, 1494, 1646, 2220, 2622, 2682, 3165, 3315
DpnI	GATC	8 cut(s)	963, 1455, 1699, 1843, 2010, 2580, 2793, 2998
DpnII	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
DraI	TTTAAA	1 cut(s)	1995
DrdI	GACNNNNNNGTC	4 cut(s)	122, 936, 1039, 1139
DseDI	GACNNNNNNGTC	4 cut(s)	122, 936, 1039, 1139
EaeI	YGGCCR	3 cut(s)	29, 978, 3252
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	8 cut(s)	96, 683, 732, 1970, 2293, 2387, 2464, 3118
EarI	CTCTTC	8 cut(s)	96, 683, 732, 1970, 2293, 2387, 2464, 3118
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	4 cut(s)	2832, 2980, 3064, 3214
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	2121
Eco47I	GGWCC	3 cut(s)	333, 338, 2854
Eco52I	CGGCCG	1 cut(s)	29
Eco57I	CTGAAG	4 cut(s)	888, 1442, 1526, 1866
Eco88I	CYCGRG	5 cut(s)	146, 482, 1575, 2348, 2870
EcoO109I	RGGNCCY	1 cut(s)	2854
EcoRI	GAATTC	2 cut(s)	1390, 1935
EcoRII	CCWGG	9 cut(s)	212, 439, 972, 1295, 1347, 1833, 2496, 2542, 3204
EcoRV	GATATC	1 cut(s)	2121
EcoT14I	CCWWGG	4 cut(s)	2832, 2980, 3064, 3214
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	4 cut(s)	2832, 2980, 3064, 3214
Esp3I	CGTCTC	1 cut(s)	96
FalI	AAGNNNNNCTT	6 cut(s)	2915, 2947, 3120, 3152, 3207, 3239
FaqI	GGGAC	2 cut(s)	462, 2249
FauI	CCCGC	4 cut(s)	212, 230, 644, 1530
FauNDI	CATATG	3 cut(s)	703, 1714, 2803
FblI	GTMKAC	2 cut(s)	2038, 2146
FokI	GGATG	6 cut(s)	251, 457, 956, 1523, 1771, 3248
FriOI	GRGCYC	1 cut(s)	223
FspBI	CTAG	4 cut(s)	986, 1479, 1964, 2030
FspI	TGCGCA	1 cut(s)	2693
GlaI	GCGC	5 cut(s)	83, 85, 188, 1235, 2693
GsuI	CTGGAG	6 cut(s)	423, 1331, 1857, 1920, 2106, 3191
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	7 cut(s)	31, 221, 254, 635, 980, 2048, 3254
HapII	CCGG	6 cut(s)	32, 56, 336, 643, 783, 1584
HgaI	GACGC	3 cut(s)	78, 196, 939
HhaI	GCGC	5 cut(s)	84, 86, 189, 1236, 2694
Hin1I	GRCGYC	2 cut(s)	123, 1431
Hin6I	GCGC	5 cut(s)	82, 84, 187, 1234, 2692
HinP1I	GCGC	5 cut(s)	82, 84, 187, 1234, 2692
HincII	GTYRAC	2 cut(s)	2039, 2147
HindII	GTYRAC	2 cut(s)	2039, 2147
HindIII	AAGCTT	2 cut(s)	907, 2696
HinfI	GANTC	9 cut(s)	408, 478, 587, 732, 1006, 1033, 1578, 2243, 3175
HpaII	CCGG	6 cut(s)	32, 56, 336, 643, 783, 1584
HphI	GGTGA	4 cut(s)	70, 695, 884, 1573
Hpy166II	GTNNAC	9 cut(s)	61, 553, 1435, 1885, 2039, 2082, 2147, 2331, 3221
Hpy8I	GTNNAC	9 cut(s)	61, 553, 1435, 1885, 2039, 2082, 2147, 2331, 3221
Hpy99I	CGWCG	5 cut(s)	55, 119, 137, 212, 540
HpyCH4IV	ACGT	6 cut(s)	123, 399, 538, 1431, 2327, 3187
HpyF3I	CTNAG	9 cut(s)	1399, 1416, 1494, 1646, 2220, 2622, 2682, 3165, 3315
HpySE526I	ACGT	6 cut(s)	123, 399, 538, 1431, 2327, 3187
Hsp92I	GRCGYC	2 cut(s)	123, 1431
HspAI	GCGC	5 cut(s)	82, 84, 187, 1234, 2692
KpnI	GGTACC	2 cut(s)	779, 2801
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
LguI	GCTCTTC	2 cut(s)	683, 732
LmnI	GCTCC	6 cut(s)	868, 895, 1052, 2087, 2782, 3290
MabI	ACCWGGT	1 cut(s)	2496
MaeI	CTAG	4 cut(s)	986, 1479, 1964, 2030
MaeII	ACGT	6 cut(s)	123, 399, 538, 1431, 2327, 3187
MaeIII	GTNAC	8 cut(s)	367, 988, 1312, 1579, 2103, 2131, 2604, 3272
MalI	GATC	8 cut(s)	963, 1455, 1699, 1843, 2010, 2580, 2793, 2998
MboI	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
MfeI	CAATTG	7 cut(s)	278, 832, 1317, 1764, 2042, 2094, 2476
MflI	RGATCY	3 cut(s)	1697, 2008, 2996
MhlI	GDGCHC	5 cut(s)	223, 2163, 2871, 3110, 3240
MlsI	TGGCCA	2 cut(s)	980, 3254
MluNI	TGGCCA	2 cut(s)	980, 3254
MlyI	GAGTC	3 cut(s)	1027, 1587, 3169
MmeI	TCCRAC	2 cut(s)	2804, 3045
Mox20I	TGGCCA	2 cut(s)	980, 3254
MroNI	GCCGGC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	692
MscI	TGGCCA	2 cut(s)	980, 3254
MslI	CAYNNNNRTG	7 cut(s)	402, 974, 1628, 2864, 3190, 3231, 3270
Msp20I	TGGCCA	2 cut(s)	980, 3254
MspA1I	CMGCKG	2 cut(s)	639, 3282
MspCI	CTTAAG	2 cut(s)	1037, 2932
MspI	CCGG	6 cut(s)	32, 56, 336, 643, 783, 1584
MunI	CAATTG	7 cut(s)	278, 832, 1317, 1764, 2042, 2094, 2476
Mva1269I	GAATGC	1 cut(s)	2965
MvaI	CCWGG	9 cut(s)	214, 441, 974, 1297, 1349, 1835, 2498, 2544, 3206
MvnI	CGCG	4 cut(s)	84, 89, 174, 207
NaeI	GCCGGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	2980
NdeI	CATATG	3 cut(s)	703, 1714, 2803
NdeII	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
NgoMIV	GCCGGC	1 cut(s)	31
NmuCI	GTSAC	4 cut(s)	1579, 2131, 2604, 3272
NsbI	TGCGCA	1 cut(s)	2693
PaeR7I	CTCGAG	5 cut(s)	146, 482, 1575, 2348, 2870
PagI	TCATGA	3 cut(s)	696, 735, 1803
PauI	GCGCGC	1 cut(s)	82
PciSI	GCTCTTC	2 cut(s)	683, 732
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 129, 204
PctI	GAATGC	1 cut(s)	2965
PdiI	GCCGGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	6 cut(s)	408, 478, 587, 732, 1006, 2243
PflMI	CCANNNNNTGG	2 cut(s)	1229, 2786
PinAI	ACCGGT	1 cut(s)	1583
PleI	GAGTC	3 cut(s)	1027, 1586, 3169
PpsI	GAGTC	3 cut(s)	1027, 1586, 3169
PpuMI	RGGWCCY	1 cut(s)	2854
PsiI	TTATAA	2 cut(s)	1368, 1815
Psp5II	RGGWCCY	1 cut(s)	2854
Psp6I	CCWGG	9 cut(s)	212, 439, 972, 1295, 1347, 1833, 2496, 2542, 3204
PspGI	CCWGG	9 cut(s)	212, 439, 972, 1295, 1347, 1833, 2496, 2542, 3204
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	6 cut(s)	219, 220, 333, 338, 634, 2854
PspPPI	RGGWCCY	1 cut(s)	2854
PspXI	VCTCGAGB	2 cut(s)	1575, 2348
PsuI	RGATCY	3 cut(s)	1697, 2008, 2996
PteI	GCGCGC	1 cut(s)	82
RsaI	GTAC	9 cut(s)	554, 777, 808, 815, 1839, 1854, 2272, 2466, 2799
RsaNI	GTAC	9 cut(s)	553, 776, 807, 814, 1838, 1853, 2271, 2465, 2798
RseI	CAYNNNNRTG	7 cut(s)	402, 974, 1628, 2864, 3190, 3231, 3270
SalI	GTCGAC	2 cut(s)	2037, 2145
SapI	GCTCTTC	2 cut(s)	683, 732
Sau3AI	GATC	8 cut(s)	961, 1453, 1697, 1841, 2008, 2578, 2791, 2996
Sau96I	GGNCC	6 cut(s)	219, 220, 333, 338, 634, 2854
ScaI	AGTACT	1 cut(s)	2272
SchI	GAGTC	3 cut(s)	1027, 1587, 3169
SduI	GDGCHC	5 cut(s)	223, 2163, 2871, 3110, 3240
SexAI	ACCWGGT	1 cut(s)	2496
SfcI	CTRYAG	2 cut(s)	1053, 2886
Sfr274I	CTCGAG	5 cut(s)	146, 482, 1575, 2348, 2870
SgrAI	CRCCGGYG	2 cut(s)	55, 1583
SinI	GGWCC	3 cut(s)	333, 338, 2854
SlaI	CTCGAG	5 cut(s)	146, 482, 1575, 2348, 2870
SmiMI	CAYNNNNRTG	7 cut(s)	402, 974, 1628, 2864, 3190, 3231, 3270
SmlI	CTYRAG	9 cut(s)	93, 146, 482, 1037, 1575, 2015, 2348, 2870, 2932
SmoI	CTYRAG	9 cut(s)	93, 146, 482, 1037, 1575, 2015, 2348, 2870, 2932
SspI	AATATT	2 cut(s)	360, 2900
SspMI	CTAG	4 cut(s)	986, 1479, 1964, 2030
StyI	CCWWGG	4 cut(s)	2832, 2980, 3064, 3214
TaiI	ACGT	6 cut(s)	126, 402, 541, 1434, 2330, 3190
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	3 cut(s)	552, 806, 2270
TauI	GCSGC	3 cut(s)	43, 89, 2822
TfiI	GAWTC	6 cut(s)	408, 478, 587, 732, 1006, 2243
TscAI	CASTG	7 cut(s)	1732, 2031, 2326, 2779, 3031, 3119, 3206
TseFI	GTSAC	4 cut(s)	1579, 2131, 2604, 3272
Tsp45I	GTSAC	4 cut(s)	1579, 2131, 2604, 3272
TspGWI	ACGGA	3 cut(s)	882, 1112, 3277
TspRI	CASTG	7 cut(s)	1732, 2031, 2326, 2779, 3031, 3119, 3206
Van91I	CCANNNNNTGG	2 cut(s)	1229, 2786
Vha464I	CTTAAG	2 cut(s)	1037, 2932
VpaK11BI	GGWCC	3 cut(s)	333, 338, 2854
XhoI	CTCGAG	5 cut(s)	146, 482, 1575, 2348, 2870
XmiI	GTMKAC	2 cut(s)	2038, 2146
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	4 cut(s)	986, 1479, 1964, 2030
ZraI	GACGTC	2 cut(s)	124, 1432
ZrmI	AGTACT	1 cut(s)	2272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.