Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007117

Physical Location & Seq

Genomic Coordinates Forward (+)

9122186 .. 9123579

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1053800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATTATTGCATACAACCTTTGCTATTCTACACGCCTTGGAAAAGTTGTACCTTCAGAGGCAAATACACTAGGAGTCAGTTCGTTTTCACCAGATCCCCATGACCTTCATATTTTAAAAGATCAGATTCTGCTTACTCCAAATGGTGTCATGTATGTCCCCAAGAAGGTTCGCAAAGGTGTATTACCCCGTTTGTTAGATGAAATATTGTCAACGAGAATAATGGTTAAACAAGCTATGAAAAAGCTGTCTGCTTCACAGCAAGTTCTTCACAGGATTTTTAATGCAACACAACTTGCTCTGAAGTTGATATCAAACGTGTATGGCTATACTGCTGCTGGGTTTAGTGGCCGCATGCCTTGTGCCGAGATTGCAGACATTATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010225 GO:0016035 GO:0018130 GO:0019438 GO:0019985 GO:0032991 GO:0033554 GO:0034641 GO:0034644 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071897 GO:0090304 GO:0104004 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 RVT_2 zf-C4pol zf-RanBP

Protein Analysis

130

Amino Acids

14.23

Weight (kDa)

9.65

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_B	PF00136	2 - 128	2.2e-22	DNA polymerase family B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63960 AT5G63960
fragaria_vesca	FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660 FvH4_1g24660
malus_domestica	MD00G1053300.v1.1 MD05G1053800.v1.1 MD07G1029900.v1.1
prunus_persica	Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1 Prupe.4G273600_v2.0.a1
pyrus_communis	pycom01g00060 pycom07g02190
rosa_chinensis	RchiOBHm_Chr2g0122111
rosa_laevigata	RLG00000018650
rosa_multiflora	Rmu_co8081762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122010
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh2AG293000 Rh2BG303400 Rh2CG281900 Rh2DG317000
rosa_wichuraiana	Rw2G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	39, 323
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	318
AluBI	AGCT	2 cut(s)	236, 247
AluI	AGCT	2 cut(s)	236, 247
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	336, 352
BlsI	GCNGC	2 cut(s)	337, 353
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	94, 121
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	94, 121
BssT1I	CCWWGG	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	356
BstKTI	GATC	2 cut(s)	97, 124
BstMBI	GATC	2 cut(s)	94, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	3 cut(s)	101, 151, 355
CviJI	RGCY	4 cut(s)	236, 247, 327, 351
CviKI_1	RGCY	4 cut(s)	236, 247, 327, 351
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	2 cut(s)	96, 123
DpnII	GATC	2 cut(s)	94, 121
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	312
Eco57I	CTGAAG	2 cut(s)	39, 323
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	3 cut(s)	104, 154, 358
FaiI	YATR	9 cut(s)	13, 102, 111, 152, 156, 239, 324, 330, 356
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	100, 150, 354
Fnu4HI	GCNGC	2 cut(s)	336, 352
Fsp4HI	GCNGC	2 cut(s)	336, 352
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	2 cut(s)	336, 352
GsaI	CCCAGC	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	104, 154, 358
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	2 cut(s)	75, 127
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	3 cut(s)	58, 126, 303
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	63, 116, 160
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	11, 287, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	104, 154, 358
Kzo9I	GATC	2 cut(s)	94, 121
LpnPI	CCDG	3 cut(s)	105, 259, 324
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	318
MalI	GATC	2 cut(s)	96, 123
MboI	GATC	2 cut(s)	94, 121
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	4 cut(s)	116, 228, 282, 388
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	2 cut(s)	94, 121
NlaIII	CATG	3 cut(s)	104, 154, 358
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	337, 353
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	116, 228, 282, 388
SatI	GCNGC	2 cut(s)	336, 352
Sau3AI	GATC	2 cut(s)	94, 121
SchI	GAGTC	1 cut(s)	84
SetI	ASST	8 cut(s)	21, 55, 108, 171, 181, 238, 249, 321
SphI	GCATGC	1 cut(s)	358
SsiI	CCGC	1 cut(s)	352
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	37
TaiI	ACGT	1 cut(s)	321
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	4 cut(s)	116, 228, 282, 388
Tru9I	TTAA	4 cut(s)	116, 228, 282, 388
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	98, 216, 254
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.