pycom07g02190

DNA polymerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
1757689 .. 1759693
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02190.3

Sequence Viewer

Length: 981 bp
ATGAACAAAGGCATAAGCAGAAAACGGCCAGCGCCGCCACAGCCGGCGGCGAACCCAGCCAAGCAGCAGGCCACGTCCCCAGAAGAAGAAGAAGAATTCGTAGACGAGGACGTCTTCCTCGACGAAACCCTTTTCGAGACTGAAGACGACCTTGTTCTCCGCGACATCGACCAGCGCCAGTCCCTCGCTTCCCGCCTCACGAAGTGGGCCCGCCCGCCTCTCTCCCATGCCTACACTTCCGCCTCCCGAAACGTCGCTTTTCAGCAATTGGAGATTGATTATGTAATTGGAGAGAGCCATAGAGAATTGCTACCTAATTGGTCCGGGTCTGCTGCCATTATCCGAATTTTTGGGGTTACAAAGGAAGGACATAGTGTTTGCTGCCATGTTCACGGATTTGAGCCATATTTCTATATCAACTGTTTCCCCGGAATGGGCCCTGACGATATATCCAGGTTTCATCAAATTCTTGAGGGGAGGATGGGGGAGGTCAACAGGAACAGCAAGGTACCAAAATTCATTCGCCGTATTGAAATGGTGCAGAAGAGGAGTATCATGTATTACCAGCAACAGGATTCTGAACCCTTTCTCAAAATTGTTGTTGCTTTGCCAACAATGGTGGCCAGCTGCCGGGGCATTCTTGAAAAGGGCATACAAATTGATGGCCTTGGTATGAAGAAATTCATGACATATGACAGCAATGTTCTTTTTGCTCTTCGTTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAGGTCCCTGCTGGTAAATATAAGACAACTAAGCCTTTGTCTTACTGCCAGTTAGAGTTCCATTGCCTATATTTAGACTTGATCAGCCATACTCCAGAAGGGGAATTTTCGAAGATGGCTCCATTTCGCATATTGAGCTTTGATATTGAGTGTGCTGGCCGTAAAGGTTATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGGTTCAGTGGCCAACCTAG

Protein Analysis

327

Amino Acids

37.25

Weight (kDa)

5.89

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 114
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 162
AciI CCGC 7 cut(s) 35, 47, 160, 193, 211, 215, 240
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 4 cut(s) 26, 621, 916, 971
AcsI RAATTY 6 cut(s) 95, 345, 465, 515, 680, 863
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 204
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 4 cut(s) 433, 434, 571, 630
AgsI TTSAA 2 cut(s) 533, 644
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 2 cut(s) 452, 960
AluBI AGCT 2 cut(s) 627, 897
AluI AGCT 2 cut(s) 627, 897
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 944
AoxI GGCC 8 cut(s) 26, 69, 207, 436, 621, 664, 916, 971
ApaI GGGCCC 2 cut(s) 211, 440
ApeKI GCWGC 4 cut(s) 64, 332, 381, 627
ApoI RAATTY 6 cut(s) 95, 345, 465, 515, 680, 863
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
Asp700I GAANNNNTTC 2 cut(s) 585, 680
Asp718I GGTACC 1 cut(s) 508
AspLEI GCGC 2 cut(s) 34, 177
AspS9I GGNCC 6 cut(s) 207, 208, 321, 436, 437, 763
AsuC2I CCSGG 3 cut(s) 325, 429, 632
AsuII TTCGAA 1 cut(s) 869
AvaII GGWCC 2 cut(s) 321, 763
BaeGI GKGCMC 2 cut(s) 211, 440
BalI TGGCCA 2 cut(s) 623, 973
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 2 cut(s) 211, 440
BbsI GAAGAC 2 cut(s) 106, 150
BbvI GCAGC 4 cut(s) 76, 319, 368, 614
BccI CCATC 3 cut(s) 475, 656, 868
BceAI ACGGC 3 cut(s) 41, 510, 903
BciT130I CCWGG 2 cut(s) 454, 962
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 3 cut(s) 325, 429, 632
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 979
BfoI RGCGCY 2 cut(s) 35, 178
BisI GCNGC 6 cut(s) 35, 48, 65, 333, 382, 628
BlsI GCNGC 6 cut(s) 36, 49, 66, 334, 383, 629
Bme1390I CCNGG 5 cut(s) 325, 429, 454, 632, 962
Bme18I GGWCC 2 cut(s) 321, 763
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 6 cut(s) 207, 208, 321, 436, 437, 763
BmiI GGNNCC 5 cut(s) 209, 438, 510, 765, 879
BmrFI CCNGG 5 cut(s) 325, 429, 454, 632, 962
BpiI GAAGAC 2 cut(s) 106, 150
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 869
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 3 cut(s) 325, 429, 632
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 427, 631, 667
Bsc4I CCNNNNNNNGG 4 cut(s) 433, 434, 571, 630
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 178, 808
Bse3DI GCAATG 2 cut(s) 706, 820
BseBI CCWGG 2 cut(s) 454, 962
BseDI CCNNGG 3 cut(s) 427, 631, 667
BseGI GGATG 1 cut(s) 486
BseLI CCNNNNNNNGG 4 cut(s) 433, 434, 571, 630
BseMI GCAATG 2 cut(s) 706, 820
BseMII CTCAG 1 cut(s) 927
BseNI ACTGG 2 cut(s) 178, 808
BseRI GAGGAG 1 cut(s) 562
BseSI GKGCMC 2 cut(s) 211, 440
BseXI GCAGC 4 cut(s) 76, 319, 368, 614
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 8 cut(s) 28, 71, 209, 438, 623, 666, 918, 973
BshNI GGYRCC 1 cut(s) 508
BsiSI CCGG 4 cut(s) 44, 324, 429, 631
BslFI GGGAC 3 cut(s) 61, 166, 749
BslI CCNNNNNNNGG 4 cut(s) 433, 434, 571, 630
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 3 cut(s) 61, 166, 749
BsmI GAATGC 1 cut(s) 636
BsnI GGCC 8 cut(s) 28, 71, 209, 438, 623, 666, 918, 973
Bsp119I TTCGAA 1 cut(s) 869
Bsp120I GGGCCC 2 cut(s) 207, 436
Bsp1286I GDGCHC 2 cut(s) 211, 440
Bsp143I GATC 2 cut(s) 840, 949
BspACI CCGC 7 cut(s) 35, 47, 160, 193, 211, 215, 240
BspANI GGCC 8 cut(s) 28, 71, 209, 438, 623, 666, 918, 973
BspCNI CTCAG 1 cut(s) 928
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 2 cut(s) 684, 723
BspLI GGNNCC 5 cut(s) 209, 438, 510, 765, 879
BspPI GGATC 1 cut(s) 944
BspQI GCTCTTC 1 cut(s) 720
BspT104I TTCGAA 1 cut(s) 869
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 706, 820
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 178, 808
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 427, 631, 667
BssMI GATC 2 cut(s) 840, 949
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 667
Bst2UI CCWGG 2 cut(s) 454, 962
Bst4CI ACNGT 1 cut(s) 422
Bst6I CTCTTC 2 cut(s) 539, 720
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 869
BstC8I GCNNGC 7 cut(s) 30, 45, 69, 211, 215, 625, 916
BstDEI CTNAG 2 cut(s) 789, 936
BstF5I GGATG 1 cut(s) 486
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 2 cut(s) 35, 178
BstHHI GCGC 2 cut(s) 34, 177
BstKTI GATC 2 cut(s) 843, 952
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 840, 949
BstMWI GCNNNNNNNGC 5 cut(s) 34, 40, 56, 633, 894
BstNI CCWGG 2 cut(s) 454, 962
BstSCI CCNGG 5 cut(s) 323, 427, 452, 630, 960
BstSLI GKGCMC 2 cut(s) 211, 440
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 76, 319, 368, 614
BstV2I GAAGAC 2 cut(s) 106, 150
BsuRI GGCC 8 cut(s) 28, 71, 209, 438, 623, 666, 918, 973
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 974
Cac8I GCNNGC 7 cut(s) 30, 45, 69, 211, 215, 625, 916
CciI TCATGA 2 cut(s) 684, 723
CfoI GCGC 2 cut(s) 34, 177
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 6 cut(s) 207, 208, 321, 436, 437, 763
Csp6I GTAC 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 600, 635
CviAII CATG 6 cut(s) 227, 386, 556, 685, 724, 947
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 789, 936
DpnI GATC 2 cut(s) 842, 951
DpnII GATC 2 cut(s) 840, 949
DraIII CACNNNGTG 1 cut(s) 204
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 4 cut(s) 26, 621, 916, 971
Eam1104I CTCTTC 2 cut(s) 539, 720
EarI CTCTTC 2 cut(s) 539, 720
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 667
Eco24I GRGCYC 2 cut(s) 211, 440
Eco47I GGWCC 2 cut(s) 321, 763
Eco57I CTGAAG 1 cut(s) 162
EcoO109I RGGNCCY 2 cut(s) 437, 763
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 452, 960
EcoT14I CCWWGG 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 211, 440
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 6 cut(s) 230, 389, 559, 688, 727, 950
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 3 cut(s) 61, 166, 749
FatI CATG 6 cut(s) 226, 385, 555, 684, 723, 946
FauI CCCGC 3 cut(s) 200, 218, 222
FauNDI CATATG 1 cut(s) 691
FbaI TGATCA 1 cut(s) 840
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 6 cut(s) 35, 48, 65, 333, 382, 628
FokI GGATG 1 cut(s) 493
FriOI GRGCYC 2 cut(s) 211, 440
Fsp4HI GCNGC 6 cut(s) 35, 48, 65, 333, 382, 628
FspBI CTAG 1 cut(s) 979
GlaI GCGC 2 cut(s) 33, 176
GluI GCNGC 6 cut(s) 35, 48, 65, 333, 382, 628
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 837
HaeII RGCGCY 2 cut(s) 35, 178
HaeIII GGCC 8 cut(s) 28, 71, 209, 438, 623, 666, 918, 973
HapII CCGG 4 cut(s) 44, 324, 429, 631
HhaI GCGC 2 cut(s) 34, 177
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 230, 389, 559, 688, 727, 950
Hin6I GCGC 2 cut(s) 32, 175
HinP1I GCGC 2 cut(s) 32, 175
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 1 cut(s) 575
HpaII CCGG 4 cut(s) 44, 324, 429, 631
Hpy166II GTNNAC 3 cut(s) 103, 391, 493
Hpy188I TCNGA 2 cut(s) 344, 580
Hpy188III TCNNGA 9 cut(s) 136, 199, 246, 470, 641, 685, 724, 854, 935
Hpy8I GTNNAC 3 cut(s) 103, 391, 493
Hpy99I CGWCG 2 cut(s) 125, 257
HpyAV CCTTC 2 cut(s) 359, 851
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 3 cut(s) 74, 111, 252
HpyCH4V TGCA 2 cut(s) 541, 735
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 40, 56, 633, 894
HpyF3I CTNAG 2 cut(s) 789, 936
HpySE526I ACGT 3 cut(s) 74, 111, 252
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 230, 389, 559, 688, 727, 950
HspAI GCGC 2 cut(s) 32, 175
KpnI GGTACC 1 cut(s) 512
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 2 cut(s) 840, 949
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 1 cut(s) 883
Lsp1109I GCAGC 4 cut(s) 76, 319, 368, 614
MaeI CTAG 1 cut(s) 979
MaeII ACGT 3 cut(s) 74, 111, 252
MaeIII GTNAC 1 cut(s) 355
MalI GATC 2 cut(s) 842, 951
MboI GATC 2 cut(s) 840, 949
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 211, 440
MlsI TGGCCA 2 cut(s) 623, 973
MluNI TGGCCA 2 cut(s) 623, 973
Mox20I TGGCCA 2 cut(s) 623, 973
MroNI GCCGGC 1 cut(s) 43
MroXI GAANNNNTTC 2 cut(s) 585, 680
MscI TGGCCA 2 cut(s) 623, 973
Msp20I TGGCCA 2 cut(s) 623, 973
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 4 cut(s) 44, 324, 429, 631
MspR9I CCNGG 5 cut(s) 325, 429, 454, 632, 962
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 636
MvaI CCWGG 2 cut(s) 454, 962
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 5 cut(s) 34, 40, 56, 633, 894
NaeI GCCGGC 1 cut(s) 45
NciI CCSGG 3 cut(s) 325, 429, 632
NdeI CATATG 1 cut(s) 691
NdeII GATC 2 cut(s) 840, 949
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 6 cut(s) 230, 389, 559, 688, 727, 950
NlaIV GGNNCC 5 cut(s) 209, 438, 510, 765, 879
NspV TTCGAA 1 cut(s) 869
PagI TCATGA 2 cut(s) 684, 723
PciSI GCTCTTC 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 585, 680
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 6 cut(s) 36, 49, 66, 334, 383, 629
PpuMI RGGWCCY 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 452, 960
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 452, 960
PspN4I GGNNCC 5 cut(s) 209, 438, 510, 765, 879
PspOMI GGGCCC 2 cut(s) 207, 436
PspPI GGNCC 6 cut(s) 207, 208, 321, 436, 437, 763
PspPPI RGGWCCY 1 cut(s) 763
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 720
SatI GCNGC 6 cut(s) 35, 48, 65, 333, 382, 628
Sau3AI GATC 2 cut(s) 840, 949
Sau96I GGNCC 6 cut(s) 207, 208, 321, 436, 437, 763
ScrFI CCNGG 5 cut(s) 325, 429, 454, 632, 962
SduI GDGCHC 2 cut(s) 211, 440
SfuI TTCGAA 1 cut(s) 869
SinI GGWCC 2 cut(s) 321, 763
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
SsiI CCGC 7 cut(s) 35, 47, 160, 193, 211, 215, 240
SspMI CTAG 1 cut(s) 979
StyD4I CCNGG 5 cut(s) 323, 427, 452, 630, 960
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 3 cut(s) 77, 114, 255
TaqI TCGA 4 cut(s) 120, 135, 168, 869
TauI GCSGC 2 cut(s) 37, 50
TfiI GAWTC 1 cut(s) 575
TscAI CASTG 1 cut(s) 974
TseI GCWGC 4 cut(s) 64, 332, 381, 627
TspDTI ATGAA 6 cut(s) 17, 449, 508, 673, 689, 712
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 1 cut(s) 974
VpaK11BI GGWCC 2 cut(s) 321, 763
XapI RAATTY 6 cut(s) 95, 345, 465, 515, 680, 863
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 2 cut(s) 585, 680
XspI CTAG 1 cut(s) 979
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.