Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013598

Physical Location & Seq

Genomic Coordinates Reverse (-)

18331407 .. 18335312

Gene Structure 3906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTGCCCAAGGCCTTGGCTACTGGCTTCAGTGGCAAGTGGGACTTTGTGCTGTGATCATTGCAGGTCCTTCAATTCTAGCTCTCAAATATGTCAGGAATTCAAAGCAAGAACCTCTGAATTCTGTTGACTTGTGGAGTACATGTTGGAAATCAGTGGATCCTATTTGGCTTCTGTTCTACAGGGCCTTCGCTTTCCTTTGCATGGCCAAAATGCTCTACGATTTTTTGGCCTTATTCCCAGTTTTCACACTCGTTTTCTACACCCAGTGGACTTTTATACTGGTCACTCTTTATTTTGGGCTGGGGACAATTATATCTGCTCATGGATGTTTTGTTGCAAGGAATGAATTGAAGGGGAAACCCAAGTCAAAAAGCCAACAAAAAGCAGGGTTCTTTGGAAATGTAATGCAGATTATGTATCTGACAAGTGCAGGTGCTTCTATGCTAACAGATATAGTGTTCTGGTGTCTCATAGTTCCATTTCTAACTAGCATGGAATTTGAAATGACCCTGTTGATAGGAGCTATGCATGCTGTAAATGCCGGTTTCCTTATTGTGGATACTGCTCTCAATAGACTTCCATTTTCATCGTTAGGGTTTGCATATTTTGTGCTCTTTAGCTGCCTCTACATCACTTTCCAATGGACCATTCACGCCCTTGGTGTTGACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.47

Weight (kDa)

8.51

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26510 FvH4_1g26510
malus_domestica	MD17G1280800.v1.1
prunus_persica	Prupe.3G004700_v2.0.a1
pyrus_communis	pycom17g27860
rosa_chinensis	RchiOBHm_Chr3g0486601
rosa_laevigata	RLG00000023075 RLG00000035007
rosa_multiflora	Rmu_sc0000037.1_g000020 Rmu_sc0001508.1_g000005
rosa_rugosa	Rorug03G0225300 Rorug03G0225400 Rorug03G0225500
rosa_samantha	Rh3AG275400 Rh3CG309700 Rh3DG306400 Rh3DG306500
rosa_wichuraiana	Rw3G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
Acc36I	ACCTGC	2 cut(s)	56, 425
AclWI	GGATC	2 cut(s)	155, 168
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	100, 121, 500
AcuI	CTGAAG	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	205, 559
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	75, 105, 355, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	3 cut(s)	83, 527, 624
AluI	AGCT	3 cut(s)	83, 527, 624
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	155, 168
AoxI	GGCC	4 cut(s)	13, 186, 207, 231
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	3 cut(s)	100, 121, 500
AspS9I	GGNCC	3 cut(s)	68, 186, 648
AvaII	GGWCC	2 cut(s)	68, 648
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	80, 492
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	56, 425
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	625
BlsI	GCNGC	1 cut(s)	626
Bme18I	GGWCC	2 cut(s)	68, 648
BmgT120I	GGNCC	3 cut(s)	68, 186, 648
BmiI	GGNNCC	1 cut(s)	162
BmrI	ACTGGG	2 cut(s)	236, 262
BmuI	ACTGGG	2 cut(s)	236, 262
BsaJI	CCNNGG	3 cut(s)	10, 16, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 559
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	5 cut(s)	29, 242, 268, 288, 677
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	10, 16, 661
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	205, 559
BseMI	GCAATG	1 cut(s)	60
BseNI	ACTGG	5 cut(s)	29, 242, 268, 288, 677
BseXI	GCAGC	1 cut(s)	611
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	15, 188, 209, 233
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	546
BslFI	GGGAC	2 cut(s)	57, 322
BslI	CCNNNNNNNGG	2 cut(s)	205, 559
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	57, 322
BsnI	GGCC	4 cut(s)	15, 188, 209, 233
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	57, 160
BspANI	GGCC	4 cut(s)	15, 188, 209, 233
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	2 cut(s)	56, 425
BspPI	GGATC	2 cut(s)	155, 168
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	5 cut(s)	29, 242, 268, 288, 677
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	3 cut(s)	10, 16, 661
BssMI	GATC	2 cut(s)	57, 160
BssT1I	CCWWGG	3 cut(s)	10, 16, 661
BstC8I	GCNNGC	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	2 cut(s)	60, 163
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	57, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 533, 542
BstNSI	RCATGY	2 cut(s)	147, 536
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	15, 188, 209, 233
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	3 cut(s)	38, 162, 275
BveI	ACCTGC	2 cut(s)	56, 425
Cac8I	GCNNGC	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	3 cut(s)	68, 186, 648
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	5 cut(s)	144, 205, 326, 496, 533
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	2 cut(s)	59, 162
DpnII	GATC	2 cut(s)	57, 160
DraIII	CACNNNGTG	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	207
Eco130I	CCWWGG	3 cut(s)	10, 16, 661
Eco147I	AGGCCT	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	68, 648
Eco57I	CTGAAG	1 cut(s)	14
EcoO109I	RGGNCCY	2 cut(s)	68, 186
EcoRI	GAATTC	2 cut(s)	100, 121
EcoT14I	CCWWGG	3 cut(s)	10, 16, 661
EcoT22I	ATGCAT	1 cut(s)	534
ErhI	CCWWGG	3 cut(s)	10, 16, 661
FaeI	CATG	5 cut(s)	147, 208, 329, 499, 536
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	2 cut(s)	57, 322
FatI	CATG	5 cut(s)	143, 204, 325, 495, 532
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	625
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	625
FspBI	CTAG	2 cut(s)	80, 492
GluI	GCNGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	4 cut(s)	15, 188, 209, 233
HapII	CCGG	1 cut(s)	546
Hin1II	CATG	5 cut(s)	147, 208, 329, 499, 536
HincII	GTYRAC	2 cut(s)	130, 670
HindII	GTYRAC	2 cut(s)	130, 670
HpaII	CCGG	1 cut(s)	546
Hpy166II	GTNNAC	3 cut(s)	130, 273, 670
Hpy188I	TCNGA	2 cut(s)	120, 426
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	3 cut(s)	130, 273, 670
HpyAV	CCTTC	3 cut(s)	81, 199, 349
HpyCH4V	TGCA	7 cut(s)	65, 204, 341, 412, 434, 532, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 533, 542
Hsp92II	CATG	5 cut(s)	147, 208, 329, 499, 536
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	57, 160
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	611
MaeI	CTAG	2 cut(s)	80, 492
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	59, 162
MboI	GATC	2 cut(s)	57, 160
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	6 cut(s)	75, 100, 121, 312, 350, 500
MluNI	TGGCCA	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	2 cut(s)	126, 638
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	34, 533, 542
NdeII	GATC	2 cut(s)	57, 160
NlaIII	CATG	5 cut(s)	147, 208, 329, 499, 536
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	2 cut(s)	147, 536
PaeI	GCATGC	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	15
PciI	ACATGT	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	626
PpuMI	RGGWCCY	1 cut(s)	68
PscI	ACATGT	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	68, 186, 648
PspPPI	RGGWCCY	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	2 cut(s)	57, 160
Sau96I	GGNCC	3 cut(s)	68, 186, 648
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	6 cut(s)	70, 85, 118, 439, 529, 626
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	68, 648
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	6 cut(s)	75, 100, 121, 312, 350, 500
SseBI	AGGCCT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	80, 492
StuI	AGGCCT	1 cut(s)	15
StyI	CCWWGG	3 cut(s)	10, 16, 661
TasI	AATT	6 cut(s)	75, 100, 121, 312, 350, 500
TatI	WGTACW	1 cut(s)	140
TscAI	CASTG	3 cut(s)	38, 162, 275
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	363, 579
TspRI	CASTG	3 cut(s)	38, 162, 275
VpaK11BI	GGWCC	2 cut(s)	68, 648
XapI	RAATTY	3 cut(s)	100, 121, 500
XceI	RCATGY	2 cut(s)	147, 536
XspI	CTAG	2 cut(s)	80, 492
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.