Prupe.3G004700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013598
Physical Location & Seq
Reverse (-)
291576 .. 294251
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G004700.1

Sequence Viewer

Length: 882 bp
ATGAGCAGTGAAAAAGGAGAAGGCCCTGGCTATTGGCTTCAATGGCAAGTGCTGGTTTGTGCTCTGATTGTTACTGTTCCAGCAGTGATAGCTCTGAAATTTGTGAAGAAAGCAAAGCAGCAACCTTTGAATTCTGTGGACTTGTGGAGCACATGCTGGAGATCCCTCGATCCTCTTTGGCTTCTCTTTTACGGAGCTTTGGTCTTCCTTTGTATGGCCAAAATGCTCTATGACATGGTCTCCCAATATGGACTTTTTACCCTCGTTTTCTACACCCAGTGGACTTTTGCGTTGGTTATGCTGTATTTTGCGCTGGGAACAATTATATCTGCACATGGATGTTGGGTTGGAAGGTCTACTTACAGAGAAGAACAATTGAAGGGTAGAGTCAAATCGAAAAGCCACCAAGCTCGAAATGAGATAAGCCAAAGAGCAGGATTCTTTGGAAATCTAATGCAGATTATGTATCAGATATGTGCAGGTGCTGTGATGCTAACGGACATTGTATTTTGGTGTCTCATACTACCATTTCTAACAAGCATAGAATTCGAACTGACCCTGTTGATAGGTGCCATACATGCTGTGAATGCTGTTTTTCTAATCGGGGATACCGCTCTCAATAGGCTTCCATTTCCTAAGTTGGGTTTTGCATATTTTGCGCTCTTTGGCTTCCTCTATATTGTTTTCCAATGGCTCCTTCACGCCTCTGGTGTTAAATGGTGGCCATATCCTTTTCTCGAGCTTAACACACCTTGGGCACCTTTATGGTATTTTGGATTGGCAGTATGGCACATTCCCTGTTTTTGGATATACTCCCTAATCGTCAAGGTCAAATTTTCAATCCTCCCAAGCTTGTTTCCTCGTGCATTGGTAAGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

33.75

Weight (kDa)

9.21

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 880
AarI CACCTGC 1 cut(s) 470
Acc36I ACCTGC 1 cut(s) 470
AccB1I GGYRCC 2 cut(s) 569, 757
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 356
AciI CCGC 1 cut(s) 612
AclWI GGATC 2 cut(s) 156, 164
AcoI YGGCCR 2 cut(s) 216, 722
AcsI RAATTY 4 cut(s) 98, 130, 545, 833
AdeI CACNNNGTG 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 214, 641, 804
AgsI TTSAA 4 cut(s) 41, 130, 379, 840
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 92, 197, 410, 742, 852
AluI AGCT 5 cut(s) 92, 197, 410, 742, 852
Alw21I GWGCWC 2 cut(s) 64, 152
Alw26I GTCTC 2 cut(s) 244, 521
AlwI GGATC 2 cut(s) 156, 164
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 3 cut(s) 22, 216, 722
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 4 cut(s) 98, 130, 545, 833
AspLEI GCGC 2 cut(s) 313, 661
AspS9I GGNCC 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 549
AvaI CYCGRG 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 760
BalI TGGCCA 2 cut(s) 218, 724
BanI GGYRCC 2 cut(s) 569, 757
BauI CACGAG 1 cut(s) 861
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 2 cut(s) 64, 152
BbvI GCAGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 244, 521
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 571, 695, 759
BmrFI CCNGG 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 25, 752
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 641, 804
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 25, 752
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 3 cut(s) 214, 641, 804
BseNI ACTGG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 315, 498
BshFI GGCC 3 cut(s) 24, 218, 724
BshNI GGYRCC 2 cut(s) 569, 757
BsiHKAI GWGCWC 2 cut(s) 64, 152
BsiHKCI CYCGRG 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 214, 641, 804
BsmAI GTCTC 2 cut(s) 244, 521
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 3 cut(s) 24, 218, 724
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 737
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 3 cut(s) 64, 152, 760
Bsp143I GATC 2 cut(s) 161, 169
BspACI CCGC 1 cut(s) 612
BspANI GGCC 3 cut(s) 24, 218, 724
BspLI GGNNCC 3 cut(s) 571, 695, 759
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 156, 164
BspT104I TTCGAA 1 cut(s) 549
BspT107I GGYRCC 2 cut(s) 569, 757
BspTNI GGTCTC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 614
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 25, 752
BssMI GATC 2 cut(s) 161, 169
BssSI CACGAG 1 cut(s) 861
BssT1I CCWWGG 1 cut(s) 752
Bst2BI CACGAG 1 cut(s) 861
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 76
BstAPI GCANNNNNTGC 1 cut(s) 656
BstBI TTCGAA 1 cut(s) 549
BstDEI CTNAG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 344
BstHHI GCGC 2 cut(s) 313, 661
BstKTI GATC 2 cut(s) 164, 172
BstMAI GTCTC 2 cut(s) 244, 521
BstMBI GATC 2 cut(s) 161, 169
BstMWI GCNNNNNNNGC 5 cut(s) 43, 89, 578, 587, 656
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 2 cut(s) 156, 581
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 760
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 3 cut(s) 24, 218, 724
BtsCI GGATG 1 cut(s) 344
BtsI GCAGTG 2 cut(s) 13, 90
BtsIMutI CAGTG 3 cut(s) 13, 90, 284
BveI ACCTGC 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 313, 661
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 4 cut(s) 153, 235, 335, 578
DdeI CTNAG 1 cut(s) 636
DpnI GATC 2 cut(s) 163, 171
DpnII GATC 2 cut(s) 161, 169
DraIII CACNNNGTG 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 216, 722
Eco130I CCWWGG 1 cut(s) 752
Eco31I GGTCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 23
EcoRI GAATTC 2 cut(s) 130, 545
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 752
FaeI CATG 4 cut(s) 156, 238, 338, 581
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FatI CATG 4 cut(s) 152, 234, 334, 577
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 119
GlaI GCGC 2 cut(s) 312, 660
GluI GCNGC 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 3 cut(s) 24, 218, 724
HhaI GCGC 2 cut(s) 313, 661
Hin1II CATG 4 cut(s) 156, 238, 338, 581
Hin6I GCGC 2 cut(s) 311, 659
HinP1I GCGC 2 cut(s) 311, 659
HindIII AAGCTT 1 cut(s) 850
HinfI GANTC 2 cut(s) 387, 438
Hpy166II GTNNAC 3 cut(s) 139, 282, 357
Hpy188I TCNGA 3 cut(s) 66, 96, 471
Hpy188III TCNNGA 1 cut(s) 737
Hpy8I GTNNAC 3 cut(s) 139, 282, 357
HpyAV CCTTC 4 cut(s) 14, 345, 373, 707
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 5 cut(s) 332, 457, 479, 650, 866
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 89, 578, 587, 656
HpyF3I CTNAG 1 cut(s) 636
Hsp92II CATG 4 cut(s) 156, 238, 338, 581
HspAI GCGC 2 cut(s) 311, 659
Kzo9I GATC 2 cut(s) 161, 169
LmnI GCTCC 3 cut(s) 147, 194, 699
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 163, 171
MbiI CCGCTC 1 cut(s) 614
MboI GATC 2 cut(s) 161, 169
MboII GAAGA 3 cut(s) 118, 196, 380
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 3 cut(s) 64, 152, 760
MlsI TGGCCA 2 cut(s) 218, 724
MluCI AATT 6 cut(s) 98, 130, 321, 374, 545, 833
MluNI TGGCCA 2 cut(s) 218, 724
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 7 cut(s) 176, 183, 272, 683, 715, 854, 870
Mox20I TGGCCA 2 cut(s) 218, 724
MscI TGGCCA 2 cut(s) 218, 724
MseI TTAA 2 cut(s) 714, 744
MslI CAYNNNNRTG 2 cut(s) 337, 763
Msp20I TGGCCA 2 cut(s) 218, 724
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 5 cut(s) 43, 89, 578, 587, 656
NdeII GATC 2 cut(s) 161, 169
NlaIII CATG 4 cut(s) 156, 238, 338, 581
NlaIV GGNNCC 3 cut(s) 571, 695, 759
NspI RCATGY 2 cut(s) 156, 581
NspV TTCGAA 1 cut(s) 549
PaeR7I CTCGAG 1 cut(s) 737
PaqCI CACCTGC 1 cut(s) 470
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 438
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PsiI TTATAA 1 cut(s) 880
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 3 cut(s) 571, 695, 759
PspPI GGNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 236
RseI CAYNNNNRTG 2 cut(s) 337, 763
SaqAI TTAA 2 cut(s) 714, 744
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 161, 169
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 3 cut(s) 64, 152, 760
SfaNI GCATC 1 cut(s) 480
Sfr274I CTCGAG 1 cut(s) 737
SfuI TTCGAA 1 cut(s) 549
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 2 cut(s) 337, 763
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 6 cut(s) 98, 130, 321, 374, 545, 833
SsiI CCGC 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 5 cut(s) 168, 395, 412, 549, 738
TasI AATT 6 cut(s) 98, 130, 321, 374, 545, 833
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 2 cut(s) 714, 744
Tru9I TTAA 2 cut(s) 714, 744
TscAI CASTG 3 cut(s) 13, 90, 284
TseI GCWGC 1 cut(s) 118
TspGWI ACGGA 2 cut(s) 207, 512
TspRI CASTG 3 cut(s) 13, 90, 284
Tth111I GACNNNGTC 1 cut(s) 236
XapI RAATTY 4 cut(s) 98, 130, 545, 833
XceI RCATGY 2 cut(s) 156, 581
XhoI CTCGAG 1 cut(s) 737
XmiI GTMKAC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.