RLG00000023075

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013598
Physical Location & Seq
Forward (+)
17755772 .. 17757798
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023075

Sequence Viewer

Length: 843 bp
ATGTCTGCTCAAGGCTTTGGCTACTGGCTTCAATGGCAAGTGGGACTTTGTGCTTTGATTATCACAGGTCCTTCTATTATAGCTCTCAAATATGTCAAGAATTCAAAGCAGGAACCTTTGAATTCTGTTGACTTGTGGAGTACATGTTGGAAATCAGTGGATCCTATTTGGCTTCTGTTCTACAGAGCTTTCGCTTTCCTTTGCTTGGCCAAAATGCTCTACGACTTTTTCGCCATATTCCCAATGTTCACACTCGTTTTCTACACCCAGTGGACTTTTATGCTGGTTACTCTCTATTTTGCGCTGGGGACGATTATATCTGCTCATGGATGTTTTGTTGCAAGGAATGAATTGAAGGGCAAACCCAAGTCAAAAAGCCAACAAAAAGCAGGATTCTTTGGAAATCTAATGCAGATTATGTATCTGACAAGTGCAGGTGCTTCTATGCTTACAGATATAGTTTTTTGGTGTCTCATACTTCCATTTCTAACCAGTATGGAATTTGAATTGACCCTGCTGATAGGAGCTATGCATGCTGTAAATGCCGGTTTTCTTATTGTGGATACCGCTCTCAATAGACTTCCGTTTCCTTCGTTAGGATTTGTATACTTTGTGCTCTTTGGCTCCCTCTACATCACTTTCCAATGGACCATTCACGCCCTTGGTGTTGACTGGTGGCCATATCCTTTTCTCGAGCTAAATACACCTTGGGCGCCTGTATGTTATTTTGGGTTGGCATTGGTTCATATTCCCTGTTATTGGATATATACCTTGGTGGTGAAGGCAAAAGGTTCAATTCTCCCCAAATTGTTTCCCCGTACATTTGACAAGTTGCATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.04

Weight (kDa)

8.89

Isoelectric Point (pI)

26.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 712
AccBSI CCGCTC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 606
AciI CCGC 1 cut(s) 567
AclWI GGATC 2 cut(s) 155, 168
AcoI YGGCCR 2 cut(s) 207, 677
AcsI RAATTY 3 cut(s) 100, 121, 500
AcyI GRCGYC 1 cut(s) 713
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 2 cut(s) 142, 820
AfiI CCNNNNNNNGG 3 cut(s) 205, 596, 759
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 6 cut(s) 32, 105, 121, 355, 506, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 636, 668
AluBI AGCT 4 cut(s) 83, 188, 527, 697
AluI AGCT 4 cut(s) 83, 188, 527, 697
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 155, 168
Ama87I CYCGRG 1 cut(s) 692
AoxI GGCC 2 cut(s) 207, 677
ApoI RAATTY 3 cut(s) 100, 121, 500
AspLEI GCGC 2 cut(s) 304, 715
AspS9I GGNCC 2 cut(s) 68, 648
AsuHPI GGTGA 1 cut(s) 790
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 2 cut(s) 68, 648
BalI TGGCCA 2 cut(s) 209, 679
BamHI GGATCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 712
Bbv12I GWGCWC 1 cut(s) 618
BciVI GTATCC 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 425
BfuI GTATCC 1 cut(s) 556
Bme18I GGWCC 2 cut(s) 68, 648
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 2 cut(s) 68, 648
BmiI GGNNCC 4 cut(s) 114, 162, 625, 714
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 661, 707, 771
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 596, 759
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 4 cut(s) 29, 268, 492, 677
BseDI CCNNGG 3 cut(s) 661, 707, 771
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 3 cut(s) 205, 596, 759
BseNI ACTGG 4 cut(s) 29, 268, 492, 677
BseYI CCCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 209, 679
BshNI GGYRCC 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 618
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 1 cut(s) 546
BslFI GGGAC 2 cut(s) 57, 322
BslI CCNNNNNNNGG 3 cut(s) 205, 596, 759
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 57, 322
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 2 cut(s) 209, 679
BsoBI CYCGRG 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 567
BspANI GGCC 2 cut(s) 209, 679
BspLI GGNNCC 4 cut(s) 114, 162, 625, 714
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 2 cut(s) 155, 168
BspT107I GGYRCC 1 cut(s) 712
BsrBI CCGCTC 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 4 cut(s) 29, 268, 492, 677
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 3 cut(s) 661, 707, 771
BssMI GATC 1 cut(s) 160
BssNAI GTATAC 1 cut(s) 607
BssNI GRCGYC 1 cut(s) 713
BssT1I CCWWGG 3 cut(s) 661, 707, 771
Bst1107I GTATAC 1 cut(s) 607
BstACI GRCGYC 1 cut(s) 713
BstC8I GCNNGC 1 cut(s) 534
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 304, 715
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 34, 533, 542
BstNSI RCATGY 2 cut(s) 147, 536
BstSFI CTRYAG 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BstZ17I GTATAC 1 cut(s) 607
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 2 cut(s) 209, 679
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 162, 275
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 2 cut(s) 304, 715
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 68, 648
Csp6I GTAC 2 cut(s) 141, 819
CviAII CATG 3 cut(s) 144, 326, 533
CviQI GTAC 2 cut(s) 141, 819
DinI GGCGCC 1 cut(s) 714
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraIII CACNNNGTG 1 cut(s) 270
EaeI YGGCCR 2 cut(s) 207, 677
Eco130I CCWWGG 3 cut(s) 661, 707, 771
Eco47I GGWCC 2 cut(s) 68, 648
Eco88I CYCGRG 1 cut(s) 692
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 68
EcoRI GAATTC 2 cut(s) 100, 121
EcoT14I CCWWGG 3 cut(s) 661, 707, 771
EcoT22I ATGCAT 1 cut(s) 534
EgeI GGCGCC 1 cut(s) 714
EheI GGCGCC 1 cut(s) 714
ErhI CCWWGG 3 cut(s) 661, 707, 771
FaeI CATG 3 cut(s) 147, 329, 536
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 2 cut(s) 57, 322
FatI CATG 3 cut(s) 143, 325, 532
FblI GTMKAC 1 cut(s) 606
FokI GGATG 1 cut(s) 342
GlaI GCGC 2 cut(s) 303, 714
GsaI CCCAGC 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 2 cut(s) 209, 679
HapII CCGG 1 cut(s) 546
HhaI GCGC 2 cut(s) 304, 715
Hin1I GRCGYC 1 cut(s) 713
Hin1II CATG 3 cut(s) 147, 329, 536
Hin6I GCGC 2 cut(s) 302, 713
HinP1I GCGC 2 cut(s) 302, 713
HincII GTYRAC 2 cut(s) 130, 670
HindII GTYRAC 2 cut(s) 130, 670
HinfI GANTC 1 cut(s) 393
HpaII CCGG 1 cut(s) 546
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 5 cut(s) 130, 249, 273, 607, 670
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 2 cut(s) 97, 692
Hpy8I GTNNAC 5 cut(s) 130, 249, 273, 607, 670
HpyAV CCTTC 4 cut(s) 81, 349, 600, 775
HpyCH4V TGCA 5 cut(s) 341, 412, 434, 532, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 533, 542
Hsp92I GRCGYC 1 cut(s) 713
Hsp92II CATG 3 cut(s) 147, 329, 536
HspAI GCGC 2 cut(s) 302, 713
KasI GGCGCC 1 cut(s) 712
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 524, 629
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 162
MbiI CCGCTC 1 cut(s) 569
MboI GATC 1 cut(s) 160
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 618
MlsI TGGCCA 2 cut(s) 209, 679
MluCI AATT 7 cut(s) 100, 121, 350, 500, 506, 795, 806
MluNI TGGCCA 2 cut(s) 209, 679
Mly113I GGCGCC 1 cut(s) 713
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 1 cut(s) 638
Mox20I TGGCCA 2 cut(s) 209, 679
Mph1103I ATGCAT 1 cut(s) 534
MscI TGGCCA 2 cut(s) 209, 679
Msp20I TGGCCA 2 cut(s) 209, 679
MspI CCGG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 835
MwoI GCNNNNNNNGC 3 cut(s) 34, 533, 542
NarI GGCGCC 1 cut(s) 713
NdeII GATC 1 cut(s) 160
NlaIII CATG 3 cut(s) 147, 329, 536
NlaIV GGNNCC 4 cut(s) 114, 162, 625, 714
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 2 cut(s) 147, 536
PaeI GCATGC 1 cut(s) 536
PaeR7I CTCGAG 1 cut(s) 692
PaqCI CACCTGC 1 cut(s) 425
PciI ACATGT 1 cut(s) 143
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 1 cut(s) 393
PluTI GGCGCC 1 cut(s) 716
PpuMI RGGWCCY 1 cut(s) 68
PscI ACATGT 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 304
PspN4I GGNNCC 4 cut(s) 114, 162, 625, 714
PspPI GGNCC 2 cut(s) 68, 648
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 142, 820
RsaNI GTAC 2 cut(s) 141, 819
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 68, 648
SduI GDGCHC 1 cut(s) 618
SfcI CTRYAG 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 714
Sfr274I CTCGAG 1 cut(s) 692
SinI GGWCC 2 cut(s) 68, 648
SlaI CTCGAG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 9, 692
SmoI CTYRAG 2 cut(s) 9, 692
SphI GCATGC 1 cut(s) 536
Sse9I AATT 7 cut(s) 100, 121, 350, 500, 506, 795, 806
SsiI CCGC 1 cut(s) 567
SspDI GGCGCC 1 cut(s) 712
StyI CCWWGG 3 cut(s) 661, 707, 771
TaqI TCGA 1 cut(s) 693
TasI AATT 7 cut(s) 100, 121, 350, 500, 506, 795, 806
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 393
TscAI CASTG 2 cut(s) 162, 275
TspDTI ATGAA 3 cut(s) 363, 734, 828
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 2 cut(s) 162, 275
VpaK11BI GGWCC 2 cut(s) 68, 648
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 100, 121, 500
XceI RCATGY 2 cut(s) 147, 536
XhoI CTCGAG 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 606
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.