Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013598

Physical Location & Seq

Genomic Coordinates Forward (+)

59088640 .. 59089094

Gene Structure 455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTCGGGAGGTCATTGATTTATCAAGTGATAGTTCCATAGACACCGCTGAGCTTTTAGCAGATCTTGCCAAAACTCATGCTGAAGTTACCTCTCTTGCTGGTGTAGGTAGCTCATCCCGCAAAGCTCAGGACAAGCTGCAGAACCCAGGTGGCCCAAGCTCTGAGAAGTATATGCAAGCTAGCACCTCCGATCAACAAGAATCCCCCATAGAAGCTTATCTTAGGAGACCTGCAAAAGGAAAAGCCTTTCACCCAAAACAAATGGCAAGAAAGAAACCAGAGTTTAAGGTTTCAAGGAAACGATCTGGGGGAGTCAGAGGCAGAAGGTTCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.42

Weight (kDa)

10.11

Isoelectric Point (pI)

70.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26510 FvH4_1g26510
malus_domestica	MD17G1280800.v1.1
prunus_persica	Prupe.3G004700_v2.0.a1
pyrus_communis	pycom17g27860
rosa_chinensis	RchiOBHm_Chr3g0486601
rosa_laevigata	RLG00000023075 RLG00000035007
rosa_multiflora	Rmu_sc0000037.1_g000020 Rmu_sc0001508.1_g000005
rosa_rugosa	Rorug03G0225300 Rorug03G0225400 Rorug03G0225500
rosa_samantha	Rh3AG275400 Rh3CG309700 Rh3DG306400 Rh3DG306500
rosa_wichuraiana	Rw3G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AciI	CCGC	2 cut(s)	48, 121
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	297, 337
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	7 cut(s)	55, 114, 128, 139, 162, 182, 218
AluI	AGCT	7 cut(s)	55, 114, 128, 139, 162, 182, 218
Alw26I	GTCTC	2 cut(s)	9, 223
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	9, 223
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	3 cut(s)	42, 143, 156
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	9, 223
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	64, 193, 305
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	48, 121
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	43, 142, 157
BspMAI	CTGCAG	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	241
BspOI	GCTAGC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	64, 193, 305
Bst2UI	CCWGG	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	180, 184
BstDEI	CTNAG	4 cut(s)	51, 129, 165, 224
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	3 cut(s)	67, 196, 308
BstMAI	GTCTC	2 cut(s)	9, 223
BstMBI	GATC	3 cut(s)	64, 193, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 120
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	180, 184
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	9 cut(s)	55, 114, 128, 139, 156, 162, 182, 218, 248
CviKI_1	RGCY	9 cut(s)	55, 114, 128, 139, 156, 162, 182, 218, 248
DdeI	CTNAG	4 cut(s)	51, 129, 165, 224
DpnI	GATC	3 cut(s)	66, 195, 307
DpnII	GATC	3 cut(s)	64, 193, 305
Eco31I	GGTCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	83
FaiI	YATR	5 cut(s)	41, 81, 174, 176, 212
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	2 cut(s)	203, 315
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	166, 193, 320
Hpy188III	TCNNGA	2 cut(s)	8, 131
HpyAV	CCTTC	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	142, 178, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 120
HpyF3I	CTNAG	4 cut(s)	51, 129, 165, 224
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	3 cut(s)	64, 193, 305
LpnPI	CCDG	7 cut(s)	87, 116, 135, 162, 246, 294, 294
Lsp1109I	GCAGC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	66, 195, 307
MboI	GATC	3 cut(s)	64, 193, 305
MboII	GAAGA	1 cut(s)	325
MflI	RGATCY	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	4, 103, 199, 314
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	68, 120
NdeII	GATC	3 cut(s)	64, 193, 305
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	3 cut(s)	64, 193, 305
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	140
SsiI	CCGC	2 cut(s)	48, 121
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	237
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.