Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013598

Physical Location & Seq

Genomic Coordinates Reverse (-)

32508604 .. 32511319

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG309700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTGCTCAAGGCTTTGGCTACTGGCTTCAATGGCAAGTGGGACTTTGTGCTTTGATTATCACAGGTCCTTCTATTATAGCTCTCAAATATGTCAAGAATTCAAAGCAAGAACCTTTGAATTCTGTTGACTTGTGGAGTACATGTTGGAAATCAGTGGATCCTATTTGGCTTCTGTTCTACAGAGCTTTCGCTTTCCTTTGCTTGGCCAAAATGCTCTACGACTTTTTCGCCATATTCCCAATGTTCACACTCGTTTTCTACACCCAGTGGACTTTTATACTGGTTACTCTCTATTTTGGGCTGGGGACGATTATATCTGCTCATGGATGTTTTGTTGCAAGGAATGAATTGAAGGGCAAACCCAAGTCAAAAGGCCAACAAAAAGCAGGATTCTTTGGAAATCTAATGCAGATTATGTATCTGACAAGTGCAGGTGCTTCTATGCTTACAGATATAGTTTTTTGGTGTCTCATACTTCCATTTCTAACCAGTATGGAATTTGAATTGACCCTGTTGATAGGAGCTATGCACGCTGTAAATGCCGGTTTTCTTATTGTGGATACCGCTCTCAATAGACTTCCGTTTCCTTCGTTAGGGTTTGTATACTTTGTGCTCTTTGGCTCCCTCTACATCACTTTCCAATGGACCATTCACGCCCTTGGTGTTGACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.54

Weight (kDa)

8.57

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26510 FvH4_1g26510
malus_domestica	MD17G1280800.v1.1
prunus_persica	Prupe.3G004700_v2.0.a1
pyrus_communis	pycom17g27860
rosa_chinensis	RchiOBHm_Chr3g0486601
rosa_laevigata	RLG00000023075 RLG00000035007
rosa_multiflora	Rmu_sc0000037.1_g000020 Rmu_sc0001508.1_g000005
rosa_rugosa	Rorug03G0225300 Rorug03G0225400 Rorug03G0225500
rosa_samantha	Rh3AG275400 Rh3CG309700 Rh3DG306400 Rh3DG306500
rosa_wichuraiana	Rw3G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	2 cut(s)	155, 168
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	100, 121, 500
AdeI	CACNNNGTG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	205, 596
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	32, 105, 121, 355, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	3 cut(s)	83, 188, 527
AluI	AGCT	3 cut(s)	83, 188, 527
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	155, 168
AoxI	GGCC	2 cut(s)	207, 376
ApoI	RAATTY	3 cut(s)	100, 121, 500
AspS9I	GGNCC	2 cut(s)	68, 648
AvaII	GGWCC	2 cut(s)	68, 648
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	618
BciVI	GTATCC	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	68, 648
BmgT120I	GGNCC	2 cut(s)	68, 648
BmiI	GGNNCC	2 cut(s)	162, 625
BmrI	ACTGGG	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 596
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	5 cut(s)	29, 268, 288, 492, 677
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	205, 596
BseNI	ACTGG	5 cut(s)	29, 268, 288, 492, 677
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	209, 378
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	546
BslFI	GGGAC	2 cut(s)	57, 322
BslI	CCNNNNNNNGG	2 cut(s)	205, 596
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	57, 322
BsnI	GGCC	2 cut(s)	209, 378
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	209, 378
BspLI	GGNNCC	2 cut(s)	162, 625
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	155, 168
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	5 cut(s)	29, 268, 288, 492, 677
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	1 cut(s)	160
BssNAI	GTATAC	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	661
Bst1107I	GTATAC	1 cut(s)	607
BstC8I	GCNNGC	1 cut(s)	534
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 533, 542
BstNSI	RCATGY	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	209, 378
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	162, 275
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	68, 648
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	2 cut(s)	144, 326
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraIII	CACNNNGTG	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	661
Eco47I	GGWCC	2 cut(s)	68, 648
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRI	GAATTC	2 cut(s)	100, 121
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	2 cut(s)	147, 329
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	2 cut(s)	57, 322
FatI	CATG	2 cut(s)	143, 325
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	209, 378
HapII	CCGG	1 cut(s)	546
Hin1II	CATG	2 cut(s)	147, 329
HincII	GTYRAC	2 cut(s)	130, 670
HindII	GTYRAC	2 cut(s)	130, 670
HinfI	GANTC	1 cut(s)	393
HpaII	CCGG	1 cut(s)	546
Hpy166II	GTNNAC	5 cut(s)	130, 249, 273, 607, 670
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	5 cut(s)	130, 249, 273, 607, 670
HpyAV	CCTTC	3 cut(s)	81, 349, 600
HpyCH4V	TGCA	4 cut(s)	341, 412, 434, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 533, 542
Hsp92II	CATG	2 cut(s)	147, 329
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	524, 629
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	5 cut(s)	100, 121, 350, 500, 506
MluNI	TGGCCA	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	1 cut(s)	638
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	34, 533, 542
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	147, 329
NlaIV	GGNNCC	2 cut(s)	162, 625
NspI	RCATGY	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	425
PciI	ACATGT	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	393
PpuMI	RGGWCCY	1 cut(s)	68
PscI	ACATGT	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	162, 625
PspPI	GGNCC	2 cut(s)	68, 648
PspPPI	RGGWCCY	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	2 cut(s)	68, 648
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	6 cut(s)	70, 85, 118, 190, 439, 529
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	68, 648
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	5 cut(s)	100, 121, 350, 500, 506
SsiI	CCGC	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	661
TasI	AATT	5 cut(s)	100, 121, 350, 500, 506
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	393
TscAI	CASTG	2 cut(s)	162, 275
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	2 cut(s)	162, 275
VpaK11BI	GGWCC	2 cut(s)	68, 648
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	3 cut(s)	100, 121, 500
XceI	RCATGY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.