Rmu_sc0000037.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000037.1
OG0013598
Physical Location & Seq
Reverse (-)
126004 .. 126726
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000037.1_g000020.1.cds

Sequence Viewer

Length: 501 bp
atgtctgctcaaggctttggctactggcttcaatggcaagtgggactttgtgctttgattatcacaggtccttctattatagctctcaaatatgtcaagaattcaaagcaagaacctttgaattctgttgacttgtggagtacatgttggaaatcagtggatcctatttggcttctgttctacagagctttcgctttcctttgcttggccaaaatgctctacgactttttcgccatattcccaatgttcacactcgttttctacacccagtggacttttatactggttactctctattttgggctggggaccattatatctgctcatggatgttttgttgcaaggaatgaattgaagggcaaacccaagtcaaaaagccaacaaaaagcaggattctttggaaatctaatgcagattatgtatctggttagtcccttaatttctcatctttttgctaatggagtgatgggttctgagttttacaatccttggtatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.08

Weight (kDa)

9.05

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 155, 168
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 100, 121
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 4 cut(s) 32, 105, 121, 355
AluBI AGCT 2 cut(s) 83, 188
AluI AGCT 2 cut(s) 83, 188
AlwI GGATC 2 cut(s) 155, 168
AoxI GGCC 1 cut(s) 207
ApoI RAATTY 2 cut(s) 100, 121
AspS9I GGNCC 2 cut(s) 68, 309
AvaII GGWCC 2 cut(s) 68, 309
BalI TGGCCA 1 cut(s) 209
BamHI GGATCC 1 cut(s) 160
BccI CCATC 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 181
Bme18I GGWCC 2 cut(s) 68, 309
BmgT120I GGNCC 2 cut(s) 68, 309
BmiI GGNNCC 2 cut(s) 162, 310
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 29, 268, 288
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 3 cut(s) 29, 268, 288
BseYI CCCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 3 cut(s) 57, 322, 417
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 3 cut(s) 57, 322, 417
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 162, 310
BspPI GGATC 2 cut(s) 155, 168
BsrI ACTGG 3 cut(s) 29, 268, 288
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 335
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 162, 275
Cfr13I GGNCC 2 cut(s) 68, 309
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 144, 326
CviJI RGCY 9 cut(s) 15, 21, 28, 83, 172, 188, 209, 304, 378
CviKI_1 RGCY 9 cut(s) 15, 21, 28, 83, 172, 188, 209, 304, 378
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 474
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraIII CACNNNGTG 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 68, 309
EcoO109I RGGNCCY 1 cut(s) 68
EcoRI GAATTC 2 cut(s) 100, 121
EcoT14I CCWWGG 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 2 cut(s) 147, 329
FaiI YATR 9 cut(s) 80, 93, 145, 236, 281, 317, 327, 419, 495
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 3 cut(s) 57, 322, 417
FatI CATG 2 cut(s) 143, 325
FokI GGATG 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 2 cut(s) 147, 329
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 393
Hpy166II GTNNAC 3 cut(s) 130, 249, 273
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 3 cut(s) 130, 249, 273
HpyAV CCTTC 2 cut(s) 81, 349
HpyCH4V TGCA 2 cut(s) 341, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 2 cut(s) 147, 329
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 10, 51, 269, 281, 290, 375, 410
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MflI RGATCY 1 cut(s) 160
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 4 cut(s) 100, 121, 350, 438
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 147, 329
NlaIV GGNNCC 2 cut(s) 162, 310
NspI RCATGY 1 cut(s) 147
PciI ACATGT 1 cut(s) 143
PfeI GAWTC 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 68
PscI ACATGT 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 162, 310
PspPI GGNCC 2 cut(s) 68, 309
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 437
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 68, 309
SetI ASST 4 cut(s) 70, 85, 118, 190
SfcI CTRYAG 1 cut(s) 181
SinI GGWCC 2 cut(s) 68, 309
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 4 cut(s) 100, 121, 350, 438
StyI CCWWGG 1 cut(s) 488
TasI AATT 4 cut(s) 100, 121, 350, 438
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 2 cut(s) 162, 275
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 162, 275
VpaK11BI GGWCC 2 cut(s) 68, 309
XapI RAATTY 2 cut(s) 100, 121
XceI RCATGY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.