Rh3DG306400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013598
Physical Location & Seq
Reverse (-)
32567950 .. 32568872
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG306400.1

Sequence Viewer

Length: 285 bp
ATGGAGGTTTTGCTTGTGGCAGAATGCCATACCCGTAATCAACATGTGGCGTCATTTGATTCGTCGAGCGTGGGAAGTGGAAAGCGTGCAAAAAAGTATGCCGCGGAGATTATTGATTTGTCGAGTGATACCACCGTAGATATTGCAGAGCTTTTAGCAGATCTTGCCAAACTATTTGCTGAAGTGACCTCTCCTGCTGGTTTAGGTACTCATTTTGCAAAGCTCAAGACAAACCTGAGGACCAAGGAGTCCCGAGCTCTGCGAATAGGGAACCTAACAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.13

Weight (kDa)

7.92

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 102, 104
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 43
AluBI AGCT 3 cut(s) 151, 223, 257
AluI AGCT 3 cut(s) 151, 223, 257
Alw21I GWGCWC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 1 cut(s) 240
AxyI CCTNAGG 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 102, 243
Bse21I CCTNAGG 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 102, 243
BseMII CTCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 102, 104
BspCNI CTCAG 1 cut(s) 228
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 102, 243
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 136
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 47
BstUI CGCG 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 240
Cfr42I CCGCGG 1 cut(s) 105
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 207
CviAII CATG 1 cut(s) 44
CviJI RGCY 3 cut(s) 151, 223, 257
CviKI_1 RGCY 3 cut(s) 151, 223, 257
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 47
FaiI YATR 3 cut(s) 30, 45, 99
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
HgaI GACGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 47
HinfI GANTC 2 cut(s) 59, 248
Hpy188III TCNNGA 2 cut(s) 226, 252
Hpy99I CGWCG 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 89, 146, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 47
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 183, 207, 248
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 259
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 2 cut(s) 199, 231
MspA1I CMGCKG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 29
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 47
PciI ACATGT 1 cut(s) 43
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SacI GAGCTC 1 cut(s) 259
SacII CCGCGG 1 cut(s) 105
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 257
SduI GDGCHC 1 cut(s) 259
SetI ASST 8 cut(s) 9, 153, 191, 208, 225, 237, 259, 276
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 2 cut(s) 102, 104
SstI GAGCTC 1 cut(s) 259
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 65, 122
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 59
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.