FvH4_1g26761

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18616613 .. 18620892
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26761.t1

Sequence Viewer

Length: 2259 bp
ATGGATGGAAATAATACTTCACAAGTACCATATGTAGAGGAAGATGACTTAATTGCATCCAATGAAGTAGACCTAGAATTAGATGATAGAGATATTCTGAAAACAGGAATGATATTCAGTTGCTACGGTGTTATGTATGATTATTGCAAATATTATGCTATGAAGACAGGTTGGGCAATCAGAACAAGATCTAACTCAAAAAGAGATGGCGCACTTAAGTATGTCCAGCTTGTATGTTTAAGAGCGTTCAGAGGTAAATCCCTTAAAGAAAGTGAGCCCAAATCTTCGCAGATAACTGGGTGTTCTACACGTATTCGAGCGGTGCTCAACTCAGATGGAGAGTACAAATTGACCACAATATGTCTAGAGCACAATCATCATTTGTGCCCAGAAGCAACCAGACGTATAAGACAATATAGGGGGCTGGATCAACATTCAAAACATAGGTTTTCTTCTAATCAAGATGCTGGTGTTCGACCTTCCAAAAACATTCATGCTATACTGACCGAAAAAGGTGGATACGCCAATTTGGGATACACCGTGAAAGATGCACAAAACTTCATTAATAAGAGAACAACTTTGAAGCTTCAGAGTGATGCTTACACAAATGTCGAATTCAAAGAGTTTCAAGATGAGTTAAGGGCAAATGTGTATTGTAACTCATGGCCTGTAAAAGAAGAAGGTGCACGTTGTACGCATAAAGTCACGGAGTCTCGCTTTAAAAAGAAAAGAAAAGGAGGAAGAAAACAGAAACTATTCCTGAAAGCATCAGTGAAGAAGGAGCTGAAACATATAATCAGCTTATTGATTCAAAGAGAAGTGGCTACAGTTTCAGATAAGTATGTATTGACTCGATGGAAGAAAAGTCTAAAGAGAAAGTACAGTCTCATAAAAGGTTGTTATGATGACCCCAAATTTAAAGAAGTGAGGACTCTTCAGAAGAAAATGTTAGAAGCATTCCATGACCTCGTAAACTTTGTTGAAGGTAAGATGCAAACCGACATTGTTCTTCAAGGTATTACAGAACTAAAAGCTAAGGTGATTCAGTCCAAGCCAGTACCTAATTTGAAAGTTGATTCAAGCTCATTGGAGGAACCAGAAACTACTAAGAAAATTCTTGATCCAAAAGTTGTGAAACGAGTAGGTCGTCCAACATTTAAGAGAAAGATTTCCAAAGCCGAAGAAGTAATTCAAAGAGCAAAGAAAAGAAGGTACAACAGGAAAGTCACGCAATCAACAATGACAAAAAAGCTTTCCAAAAACACAGTGGAATATGAAAATGGTTGTGATATTGGAGTTAATGACTCTACATCTCCGCATGTCTATGATCCTCCGAAAACTCCTACAATGTCGGGCAACATCAAATCTACAGCTTTTAGAGTCGATTCTACTCCAATAAGTAACAGTGGCTATCCCATCACACCACCAAACTTCTATACGCACGGTAGTAATTTGTCTACAAATTTGTCAGGACAAATATTTCATAATGTGAAGATGGAATATGACATTGGAGGTGATTGCATAGTCAATCAAGATGCAGCAAGCATAAATAACTTGTCAACTGGTGTATGCAGTTTCTCACAGCTTTTAAATATGGTGAGCTTAGTTGGTAGTACAGTACCAAAGTCATCTATCGGCTATATGGAAGTTCGAGAGCAATGTGGAACTAATGGAACGACAACAAGCATGAGTATACTCGAAAGACAAGTACTTGATTACATATTCGATAGGAGTCTACTAAAGCAGAAGAAGGGGCAGATGGAGGAAACACTTTCTCAAATCGATGGGTTTTCAATAAAACGTGATGAGATTATTGTACTTCAAGATCACAGTTGGTTGGGTGACCAGTTGATATTTCCTGTATGCTTACACTCGCATTGGGTGGCTTTCGCGATTGATCTAATGAAGCACAAGATTGAGATATTGGATACCTTATATGACAAAATATTGCCAGGACTCGATGAAATCATATATGGAGTGTTGATAATATTAGAGGAACTATCTAAAGATTTTGGTGAGGTAATATTCAATCACAAAATGTACTCTACCGACACAATTCCTCTTGCAAAGATTGTAAGACAAGAAAATACTTGGGATTGTGGAGTACTGTTGATTAAGGTAATGGAGTCATGGTATGGTAAAATTACGACAGAGATCGATAAGGACATGGCTGACAAATATCGGCTTGATATAGCGACTTCAATTGTTTTAAGCCATCACAACGAGCTCAGGAATCAAATCATCGAAAAAGCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

753

Amino Acids

85.76

Weight (kDa)

9.13

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 129 8.2e-09 FAR1 DNA-binding domain
Peptidase_C48 PF02902 594 - 733 9.2e-08 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 320
AccI GTMKAC 4 cut(s) 69, 1457, 1693, 1735
AccII CGCG 1 cut(s) 1892
AciI CCGC 2 cut(s) 320, 1316
AclWI GGATC 3 cut(s) 435, 1115, 1322
AcsI RAATTY 4 cut(s) 614, 914, 1113, 1462
AcuI CTGAAG 2 cut(s) 572, 920
AflII CTTAAG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 1951
AjuI GAANNNNNNNTTGG 2 cut(s) 1491, 1523
Alw21I GWGCWC 4 cut(s) 327, 372, 688, 2229
Alw26I GTCTC 2 cut(s) 717, 890
Alw44I GTGCAC 1 cut(s) 684
AlwI GGATC 3 cut(s) 435, 1115, 1322
AoxI GGCC 1 cut(s) 665
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 1 cut(s) 1538
ApoI RAATTY 4 cut(s) 614, 914, 1113, 1462
AseI ATTAAT 1 cut(s) 564
Asp700I GAANNNNTTC 3 cut(s) 755, 1168, 1188
AspLEI GCGC 1 cut(s) 212
AsuHPI GGTGA 5 cut(s) 1051, 1526, 1609, 1853, 2027
BaeGI GKGCMC 2 cut(s) 389, 688
BanII GRGCYC 2 cut(s) 279, 2229
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 4 cut(s) 327, 372, 688, 2229
BbvI GCAGC 1 cut(s) 1550
BccI CCATC 8 cut(s) 200, 329, 849, 1424, 1489, 1753, 1778, 2223
BciT130I CCWGG 1 cut(s) 1953
BciVI GTATCC 3 cut(s) 512, 527, 1921
BcoDI GTCTC 2 cut(s) 717, 890
BfaI CTAG 2 cut(s) 74, 365
BfmI CTRYAG 2 cut(s) 825, 1368
BfrI CTTAAG 1 cut(s) 215
BfuI GTATCC 3 cut(s) 512, 527, 1921
BglII AGATCT 1 cut(s) 188
BisI GCNGC 1 cut(s) 1539
BlsI GCNGC 1 cut(s) 1540
BmcAI AGTACT 2 cut(s) 1710, 2106
Bme1390I CCNGG 1 cut(s) 1953
BmiI GGNNCC 1 cut(s) 1095
BmrFI CCNGG 1 cut(s) 1953
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 7 cut(s) 65, 454, 538, 586, 776, 981, 1525
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 309, 341
Bpu10I CCTNAGC 2 cut(s) 1035, 2228
Bsa29I ATCGAT 2 cut(s) 1782, 2157
BsaAI YACGTR 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 2117, 2147
Bse1I ACTGG 4 cut(s) 301, 1055, 1567, 1846
Bse3DI GCAATG 1 cut(s) 1664
BseBI CCWGG 1 cut(s) 1953
BseCI ATCGAT 2 cut(s) 1782, 2157
BseGI GGATG 2 cut(s) 10, 56
BseMI GCAATG 1 cut(s) 1664
BseMII CTCAG 2 cut(s) 345, 2242
BseNI ACTGG 4 cut(s) 301, 1055, 1567, 1846
BseSI GKGCMC 2 cut(s) 389, 688
BseXI GCAGC 1 cut(s) 1550
Bsh1236I CGCG 1 cut(s) 1892
BshFI GGCC 1 cut(s) 667
BshVI ATCGAT 2 cut(s) 1782, 2157
BsiHKAI GWGCWC 4 cut(s) 327, 372, 688, 2229
BsmAI GTCTC 2 cut(s) 717, 890
BsmI GAATGC 1 cut(s) 956
BsnI GGCC 1 cut(s) 667
Bsp1286I GDGCHC 6 cut(s) 279, 327, 372, 389, 688, 2229
Bsp143I GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
Bsp68I TCGCGA 1 cut(s) 1892
BspACI CCGC 2 cut(s) 320, 1316
BspANI GGCC 1 cut(s) 667
BspCNI CTCAG 2 cut(s) 344, 2241
BspDI ATCGAT 2 cut(s) 1782, 2157
BspFNI CGCG 1 cut(s) 1892
BspLI GGNNCC 1 cut(s) 1095
BspPI GGATC 3 cut(s) 435, 1115, 1322
BspTI CTTAAG 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 1664
BsrI ACTGG 4 cut(s) 301, 1055, 1567, 1846
BssMI GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
BssNAI GTATAC 1 cut(s) 1694
Bst1107I GTATAC 1 cut(s) 1694
Bst2UI CCWGG 1 cut(s) 1953
Bst6I CTCTTC 1 cut(s) 939
BstAFI CTTAAG 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 1543
BstDEI CTNAG 5 cut(s) 331, 1035, 1107, 1603, 2228
BstEII GGTNACC 1 cut(s) 1841
BstF5I GGATG 2 cut(s) 10, 56
BstFNI CGCG 1 cut(s) 1892
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 7 cut(s) 191, 430, 1123, 1330, 1828, 1900, 2157
BstMAI GTCTC 2 cut(s) 717, 890
BstMBI GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
BstNI CCWGG 1 cut(s) 1953
BstNSI RCATGY 1 cut(s) 1322
BstPI GGTNACC 1 cut(s) 1841
BstSCI CCNGG 1 cut(s) 1951
BstSFI CTRYAG 2 cut(s) 825, 1368
BstSLI GKGCMC 2 cut(s) 389, 688
BstUI CGCG 1 cut(s) 1892
BstV1I GCAGC 1 cut(s) 1550
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BstZ17I GTATAC 1 cut(s) 1694
Bsu15I ATCGAT 2 cut(s) 1782, 2157
BsuI GTATCC 3 cut(s) 512, 527, 1921
BsuRI GGCC 1 cut(s) 667
BsuTUI ATCGAT 2 cut(s) 1782, 2157
BtsCI GGATG 2 cut(s) 10, 56
BtsIMutI CAGTG 3 cut(s) 777, 1272, 1411
BtuMI TCGCGA 1 cut(s) 1892
Cac8I GCNNGC 1 cut(s) 1543
CfoI GCGC 1 cut(s) 212
ClaI ATCGAT 2 cut(s) 1782, 2157
CviAII CATG 7 cut(s) 494, 663, 962, 1319, 1687, 2130, 2167
DdeI CTNAG 5 cut(s) 331, 1035, 1107, 1603, 2228
DpnI GATC 7 cut(s) 190, 429, 1122, 1329, 1827, 1899, 2156
DpnII GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
DraI TTTAAA 3 cut(s) 721, 919, 1590
Eam1104I CTCTTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 939
Ecl136II GAGCTC 1 cut(s) 2227
Eco24I GRGCYC 2 cut(s) 279, 2229
Eco53kI GAGCTC 1 cut(s) 2227
Eco57I CTGAAG 2 cut(s) 572, 920
Eco91I GGTNACC 1 cut(s) 1841
EcoICRI GAGCTC 1 cut(s) 2227
EcoO65I GGTNACC 1 cut(s) 1841
EcoRI GAATTC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 1951
EcoT38I GRGCYC 2 cut(s) 279, 2229
FaeI CATG 7 cut(s) 497, 666, 965, 1322, 1690, 2133, 2170
FatI CATG 7 cut(s) 493, 662, 961, 1318, 1686, 2129, 2166
FauNDI CATATG 1 cut(s) 31
FblI GTMKAC 4 cut(s) 69, 1457, 1693, 1735
Fnu4HI GCNGC 1 cut(s) 1539
FokI GGATG 2 cut(s) 17, 43
FriOI GRGCYC 2 cut(s) 279, 2229
Fsp4HI GCNGC 1 cut(s) 1539
FspBI CTAG 2 cut(s) 74, 365
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 1539
HaeIII GGCC 1 cut(s) 667
HhaI GCGC 1 cut(s) 212
Hin1II CATG 7 cut(s) 497, 666, 965, 1322, 1690, 2133, 2170
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 1560
HindII GTYRAC 1 cut(s) 1560
HindIII AAGCTT 2 cut(s) 584, 1250
HphI GGTGA 5 cut(s) 1051, 1526, 1609, 1853, 2027
Hpy166II GTNNAC 7 cut(s) 70, 686, 973, 1458, 1560, 1694, 1736
Hpy188I TCNGA 8 cut(s) 99, 182, 251, 334, 591, 835, 939, 1335
Hpy8I GTNNAC 7 cut(s) 70, 686, 973, 1458, 1560, 1694, 1736
HpyAV CCTTC 6 cut(s) 489, 674, 772, 977, 1203, 1744
HpyCH4IV ACGT 4 cut(s) 310, 403, 688, 1801
HpyCH4V TGCA 9 cut(s) 56, 147, 551, 686, 994, 1521, 1538, 1572, 2066
HpyF3I CTNAG 5 cut(s) 331, 1035, 1107, 1603, 2228
HpySE526I ACGT 4 cut(s) 310, 403, 688, 1801
Hsp92II CATG 7 cut(s) 497, 666, 965, 1322, 1690, 2133, 2170
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 1 cut(s) 1550
LweI GCATC 7 cut(s) 65, 454, 538, 586, 776, 981, 1525
MaeI CTAG 2 cut(s) 74, 365
MaeII ACGT 4 cut(s) 310, 403, 688, 1801
MaeIII GTNAC 5 cut(s) 656, 703, 1225, 1400, 1841
MalI GATC 7 cut(s) 190, 429, 1122, 1329, 1827, 1899, 2156
MbiI CCGCTC 1 cut(s) 320
MboI GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
MfeI CAATTG 1 cut(s) 2202
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 6 cut(s) 279, 327, 372, 389, 688, 2229
MlyI GAGTC 8 cut(s) 719, 844, 925, 1298, 1389, 1741, 1950, 2135
MmeI TCCRAC 1 cut(s) 1175
MroXI GAANNNNTTC 3 cut(s) 755, 1168, 1188
MslI CAYNNNNRTG 1 cut(s) 1323
MspCI CTTAAG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 1953
MunI CAATTG 1 cut(s) 2202
Mva1269I GAATGC 1 cut(s) 956
MvaI CCWGG 1 cut(s) 1953
MvnI CGCG 1 cut(s) 1892
NdeI CATATG 1 cut(s) 31
NdeII GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
NlaIII CATG 7 cut(s) 497, 666, 965, 1322, 1690, 2133, 2170
NlaIV GGNNCC 1 cut(s) 1095
NmuCI GTSAC 3 cut(s) 703, 1225, 1841
NruI TCGCGA 1 cut(s) 1892
NspI RCATGY 1 cut(s) 1322
PcsI WCGNNNNNNNCGW 1 cut(s) 1144
PctI GAATGC 1 cut(s) 956
PdmI GAANNNNTTC 3 cut(s) 755, 1168, 1188
PfeI GAWTC 5 cut(s) 808, 1042, 1076, 1385, 2233
PkrI GCNGC 1 cut(s) 1540
PleI GAGTC 8 cut(s) 718, 844, 925, 1298, 1388, 1740, 1950, 2134
PpsI GAGTC 8 cut(s) 718, 844, 925, 1298, 1388, 1740, 1950, 2134
Ppu21I YACGTR 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 2229
Psp6I CCWGG 1 cut(s) 1951
PspEI GGTNACC 1 cut(s) 1841
PspGI CCWGG 1 cut(s) 1951
PspN4I GGNNCC 1 cut(s) 1095
PsuI RGATCY 1 cut(s) 188
RruI TCGCGA 1 cut(s) 1892
RseI CAYNNNNRTG 1 cut(s) 1323
SacI GAGCTC 1 cut(s) 2229
SatI GCNGC 1 cut(s) 1539
Sau3AI GATC 7 cut(s) 188, 427, 1120, 1327, 1825, 1897, 2154
ScaI AGTACT 2 cut(s) 1710, 2106
SchI GAGTC 8 cut(s) 719, 844, 925, 1298, 1389, 1741, 1950, 2135
ScrFI CCNGG 1 cut(s) 1953
SduI GDGCHC 6 cut(s) 279, 327, 372, 389, 688, 2229
SfaNI GCATC 7 cut(s) 65, 454, 538, 586, 776, 981, 1525
SfcI CTRYAG 2 cut(s) 825, 1368
SmiMI CAYNNNNRTG 1 cut(s) 1323
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 2 cut(s) 320, 1316
SspI AATATT 5 cut(s) 152, 1479, 1947, 1989, 2025
SspMI CTAG 2 cut(s) 74, 365
SstI GAGCTC 1 cut(s) 2229
StyD4I CCNGG 1 cut(s) 1951
TaiI ACGT 4 cut(s) 313, 406, 691, 1804
TaqII GACCGA 1 cut(s) 521
TatI WGTACW 7 cut(s) 342, 879, 1613, 1708, 1816, 2040, 2104
TfiI GAWTC 5 cut(s) 808, 1042, 1076, 1385, 2233
TscAI CASTG 3 cut(s) 777, 1272, 1411
TseFI GTSAC 3 cut(s) 703, 1225, 1841
TseI GCWGC 1 cut(s) 1538
Tsp45I GTSAC 3 cut(s) 703, 1225, 1841
TspDTI ATGAA 8 cut(s) 78, 176, 482, 550, 1290, 1472, 1919, 1977
TspGWI ACGGA 1 cut(s) 722
TspRI CASTG 3 cut(s) 777, 1272, 1411
Vha464I CTTAAG 1 cut(s) 215
VneI GTGCAC 1 cut(s) 684
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 4 cut(s) 614, 914, 1113, 1462
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 1 cut(s) 1322
XcmI CCANNNNNNNNNTGG 1 cut(s) 1264
XmiI GTMKAC 4 cut(s) 69, 1457, 1693, 1735
XmnI GAANNNNTTC 3 cut(s) 755, 1168, 1188
XspI CTAG 2 cut(s) 74, 365
ZrmI AGTACT 2 cut(s) 1710, 2106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.