Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017971

Physical Location & Seq

Genomic Coordinates Reverse (-)

37168353 .. 37177207

Gene Structure 8855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATGGAAATGATACCTCACAAGTACCCTGCTACGTCAAGGAAGATGATGACGTGATTATATCAAACGAAGTTGAATCAGATGATGGAGATATTCCAGAAAGAGGAATGAGATTTAATTCTTATGATGGTTTGTATGATTATTGTGAAGATTATGCTAAGAAGTCAGGTTGGGCAATTAGAAAAAGATCCAACCCCAAAAAAGAGGGAGCAATTAAGTACGTCCAGCTTGTATGTTCAAGAGCATTGAGAGGTAAATCCCCTAAAGAAAGTGAGCCGATATCTTCACAGATAACTGGGTGTTTTGCGCGTATCCGAGCAGTGCTTAAGTCAGATGGGGAGTACAATTTGACCACACGTTCTAGAAAGATAGTAGAAGATGAGAATGCATATGATACTGGAGTTAATAACTCTACACCACCACATGACTATGATCCTCCCGAAACACCGAGCAACATCAACTCTACAACTTTTATAGTCGAGTCTACTCCATTAAGCAATTGTGTCCATCCCATTACACCACCAAATGCAAACTCCAACTTCTATATGGACAGTAACAATATGTCTCCAAATTTTTCAGGACATGGATTTGAAAATGTGACGATGCAATATAACATTGGAGCTGATTATATAGTCGCTCCAGATGCAATAAGCATGTCAACTGATGTTTGCAGTTTCTCACAATTGTTAAATCTGGTAAGCTCAGTTGATATACCAAACTCATCTATCGGCTCTGTAGAAGTTGGAAAGCAATGTGGAACAAATGAAACGTTGATTATACTAGAGGAGCTATCTAAAGATTTCGAAGGGGTAATCTTCGATCATAAGATGTTCTCCACTGACATAATTCCTCTTGCCAAGGTCGTAAAGCAAACAAATACGGTATGTATGGAAAGATTTGGAAACCCCGTGATGATATTCAAATCTAAGAGGCCGATCTCCGATGCTTTGCGAAGCATGTGTGGCTCCACTCTTGATGGGGTGCTACAAGATGGTTCATGGCATTTCGACAAGACCATGGTGGTAGTTGCTTCTTACGATGGCTTTTCTAATTCGGCTGTAATTGATCTCAACAGTATTAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

362

Amino Acids

39.96

Weight (kDa)

4.72

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017971)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26761
rosa_multiflora	Rmu_sc0001168.1_g000004 Rmu_sc0001836.1_g000051 Rmu_sc0002798.1_g000008
rosa_samantha	Rh1AG047900 Rh1CG052200 Rh1DG056400 Rh2AG333300 Rh4DG412300 Rh5AG276700 Rh6AG081600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	310
AclI	AACGTT	1 cut(s)	770
AclWI	GGATC	2 cut(s)	183, 428
AcsI	RAATTY	1 cut(s)	571
AfaI	GTAC	3 cut(s)	27, 221, 344
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	77, 240, 593, 922
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	229, 623, 702, 790
AluI	AGCT	4 cut(s)	229, 623, 702, 790
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	2 cut(s)	183, 428
AoxI	GGCC	1 cut(s)	932
ApoI	RAATTY	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	804
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BccI	CCATC	7 cut(s)	80, 122, 329, 516, 971, 986, 1034
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	2 cut(s)	363, 782
BfmI	CTRYAG	1 cut(s)	735
BfrI	CTTAAG	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	967
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	594, 634, 934
BmuI	ACTGGG	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	420, 624
Bpu14I	TTCGAA	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	858, 1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	301, 403
Bse3DI	GCAATG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	858, 1017
BseGI	GGATG	2 cut(s)	10, 508
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	2 cut(s)	301, 403
BseRI	GAGGAG	1 cut(s)	800
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	934
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	934
Bsp119I	TTCGAA	1 cut(s)	804
Bsp143I	GATC	5 cut(s)	188, 433, 820, 936, 1066
Bsp19I	CCATGG	1 cut(s)	1017
BspANI	GGCC	1 cut(s)	934
BspCNI	CTCAG	1 cut(s)	716
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	967
BspPI	GGATC	2 cut(s)	183, 428
BspT104I	TTCGAA	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	758
BsrI	ACTGG	2 cut(s)	301, 403
BssECI	CCNNGG	2 cut(s)	858, 1017
BssMI	GATC	5 cut(s)	188, 433, 820, 936, 1066
BssT1I	CCWWGG	2 cut(s)	858, 1017
Bst4CI	ACNGT	3 cut(s)	554, 883, 1076
BstAFI	CTTAAG	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	804
BstDEI	CTNAG	3 cut(s)	159, 703, 927
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	2 cut(s)	10, 508
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	5 cut(s)	191, 436, 823, 939, 1069
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	5 cut(s)	188, 433, 820, 936, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	644, 963
BstNSI	RCATGY	2 cut(s)	658, 961
BstSFI	CTRYAG	1 cut(s)	735
BstUI	CGCG	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	934
BtgI	CCRYGG	1 cut(s)	1017
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	10, 508
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 837
CfoI	GCGC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	26, 220, 343
CviAII	CATG	6 cut(s)	425, 584, 655, 958, 999, 1018
CviQI	GTAC	3 cut(s)	26, 220, 343
DdeI	CTNAG	3 cut(s)	159, 703, 927
DpnI	GATC	5 cut(s)	190, 435, 822, 938, 1068
DpnII	GATC	5 cut(s)	188, 433, 820, 936, 1066
Eco130I	CCWWGG	2 cut(s)	858, 1017
Eco32I	GATATC	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	858, 1017
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	2 cut(s)	858, 1017
FaeI	CATG	6 cut(s)	428, 587, 658, 961, 1002, 1021
FatI	CATG	6 cut(s)	424, 583, 654, 957, 998, 1017
FauNDI	CATATG	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	485
FokI	GGATG	2 cut(s)	17, 495
FspBI	CTAG	2 cut(s)	363, 782
GlaI	GCGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	420, 624
HaeIII	GGCC	1 cut(s)	934
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	6 cut(s)	428, 587, 658, 961, 1002, 1021
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	2 cut(s)	77, 482
Hpy166II	GTNNAC	2 cut(s)	486, 660
Hpy188I	TCNGA	4 cut(s)	82, 317, 334, 943
Hpy188III	TCNNGA	7 cut(s)	98, 240, 363, 440, 579, 641, 974
Hpy8I	GTNNAC	2 cut(s)	486, 660
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	3 cut(s)	554, 883, 1076
HpyCH4IV	ACGT	5 cut(s)	36, 54, 222, 358, 770
HpyCH4V	TGCA	5 cut(s)	389, 530, 607, 647, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	644, 963
HpyF3I	CTNAG	3 cut(s)	159, 703, 927
HpySE526I	ACGT	5 cut(s)	36, 54, 222, 358, 770
Hsp92II	CATG	6 cut(s)	428, 587, 658, 961, 1002, 1021
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	5 cut(s)	188, 433, 820, 936, 1066
LmnI	GCTCC	5 cut(s)	209, 620, 643, 787, 971
LpnPI	CCDG	9 cut(s)	43, 111, 153, 239, 282, 384, 564, 654, 680
LweI	GCATC	3 cut(s)	594, 634, 934
MaeI	CTAG	2 cut(s)	363, 782
MaeII	ACGT	5 cut(s)	36, 54, 222, 358, 770
MaeIII	GTNAC	2 cut(s)	554, 598
MalI	GATC	5 cut(s)	190, 435, 822, 938, 1068
MboI	GATC	5 cut(s)	188, 433, 820, 936, 1066
MboII	GAAGA	5 cut(s)	56, 161, 276, 389, 808
MfeI	CAATTG	2 cut(s)	499, 683
MflI	RGATCY	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	3 cut(s)	216, 561, 724
MnlI	CCTC	8 cut(s)	28, 98, 199, 245, 447, 778, 861, 924
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	6 cut(s)	117, 216, 327, 405, 494, 689
MslI	CAYNNNNRTG	1 cut(s)	429
MspCI	CTTAAG	1 cut(s)	326
MunI	CAATTG	2 cut(s)	499, 683
Mva1269I	GAATGC	1 cut(s)	391
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	644, 963
NcoI	CCATGG	1 cut(s)	1017
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	5 cut(s)	188, 433, 820, 936, 1066
NlaIII	CATG	6 cut(s)	428, 587, 658, 961, 1002, 1021
NlaIV	GGNNCC	1 cut(s)	967
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	658, 961
NspV	TTCGAA	1 cut(s)	804
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp1406I	AACGTT	1 cut(s)	770
PspN4I	GGNNCC	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	3 cut(s)	27, 221, 344
RsaNI	GTAC	3 cut(s)	26, 220, 343
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	6 cut(s)	117, 216, 327, 405, 494, 689
Sau3AI	GATC	5 cut(s)	188, 433, 820, 936, 1066
SchI	GAGTC	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	594, 634, 934
SfcI	CTRYAG	1 cut(s)	735
SfuI	TTCGAA	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SspMI	CTAG	2 cut(s)	363, 782
StyI	CCWWGG	2 cut(s)	858, 1017
TaaI	ACNGT	3 cut(s)	554, 883, 1076
TaiI	ACGT	5 cut(s)	39, 57, 225, 361, 773
TaqI	TCGA	4 cut(s)	480, 804, 819, 1008
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	6 cut(s)	117, 216, 327, 405, 494, 689
Tru9I	TTAA	6 cut(s)	117, 216, 327, 405, 494, 689
TscAI	CASTG	2 cut(s)	327, 844
TseFI	GTSAC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	780, 987
TspRI	CASTG	2 cut(s)	327, 844
Vha464I	CTTAAG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	571
XbaI	TCTAGA	1 cut(s)	362
XceI	RCATGY	2 cut(s)	658, 961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	2 cut(s)	363, 782
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.