Rh2AG333300

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017971
Physical Location & Seq
Forward (+)
48192473 .. 48196685
4213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG333300.1

Sequence Viewer

Length: 1038 bp
ATGGATGGAAATGATACCTCACAAGTACCCTGCTACGTCAAGGAAGATGATGACGTGATTATATCAAACGAAGTTGAATCAGATGATGGAGATATTCCAGAAAGAGGAATGAGATTTAATTCTTATGATGGTTTGTATGATTATTATGAAGATTATGCTAAGAAGTCAGGTGAGGAGCTAACCGACATTGTTCTTCAAGGTATAAAAGAATTAAAAGCGAAGGTGCTTCAGTCCAAGCCGGTATCCAAGGAGAATCCTTCTACAGGAACACCATCATTGGAAGAACCAATACCAACCAAAAAAATTCTTGATCCGAAAATTGTGAAACGAGTAGGTCGTCCAACATTCAAGAGAAAGATTTCCAGAGCCGAAGAGGCAATTCAAAAAGCAAAGAAAAGATGGCACAAGAGGAAAGTCACACAGTCAACAATGCCAAATAAGCGTTCTAGAAAGATAGTAGAAGATGAGAGTGCATATGATACTGGAGTTAATAACTCTACACCACCACATGACTATGATCCTCCCGAAACACCGAGCAACATCAACTCTACAGCTTTTATAGTCGAGTCTACTCCATTAAGCAATTGTGGCCATCCCATTACACCACCAAATGCAAACTCCAACTTCTATATGGACAGTAACAATATGTCTCCAAATTTTTCAGGACATGGATTTGAAAATGTGAAGATGCAATATAACATTGGAGCTGATTATATAGTCGCTCCAGATGCAATAAGCATGTCAACTGATGTTTGCAGTTTCTCACAATTGTTAAATCTGGTAAGCTCAGTTGTTATACCAAACTCATCTATCAGCTCTGTAGAAGTTGGAAAGCAATGTGGAACAAATGAAACGTTGATTATACTAGAGGAGCTATCTAAAGATTTCGGAGGGGTAATCTTCGATCATAAGATGTACTCCACGGACATAATTCCTCTTGCGAAGGTCGTAAAGCAAACAAATACTTGGGATTGTGGAGTATTGTTGATTAAAATAATGGAGTCATGGTATGGTAAAATGACCACAGAGATCAATAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

346

Amino Acids

38.6

Weight (kDa)

5.25

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 569
AclI AACGTT 1 cut(s) 854
AclWI GGATC 2 cut(s) 305, 512
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 303, 655
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 2 cut(s) 27, 917
AfiI CCNNNNNNNGG 2 cut(s) 104, 263
AgsI TTSAA 5 cut(s) 77, 197, 349, 383, 677
AjiI CACGTC 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AluBI AGCT 6 cut(s) 178, 554, 707, 786, 816, 874
AluI AGCT 6 cut(s) 178, 554, 707, 786, 816, 874
Alw26I GTCTC 1 cut(s) 654
AlwI GGATC 2 cut(s) 305, 512
AoxI GGCC 1 cut(s) 589
ApoI RAATTY 2 cut(s) 303, 655
Asp700I GAANNNNTTC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BalI TGGCCA 1 cut(s) 591
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BccI CCATC 5 cut(s) 80, 122, 280, 393, 600
BciVI GTATCC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 2 cut(s) 447, 866
BfmI CTRYAG 3 cut(s) 261, 549, 819
BfuI GTATCC 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 55
BmsI GCATC 2 cut(s) 678, 718
BpmI CTGGAG 2 cut(s) 504, 708
BsaJI CCNNGG 2 cut(s) 246, 921
BsaXI ACNNNNNCTCC 2 cut(s) 992, 1022
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 263
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 842
BseDI CCNNGG 2 cut(s) 246, 921
BseGI GGATG 2 cut(s) 10, 592
BseLI CCNNNNNNNGG 2 cut(s) 104, 263
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 2 cut(s) 188, 884
BshFI GGCC 1 cut(s) 591
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 104, 263
BsmAI GTCTC 1 cut(s) 654
BsnI GGCC 1 cut(s) 591
Bsp143I GATC 4 cut(s) 310, 517, 904, 1029
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 1 cut(s) 800
BspPI GGATC 2 cut(s) 305, 512
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 246, 921
BssMI GATC 4 cut(s) 310, 517, 904, 1029
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 423, 638
Bst6I CTCTTC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 159, 787
BstDSI CCRYGG 1 cut(s) 921
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 10, 592
BstKTI GATC 4 cut(s) 313, 520, 907, 1032
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 4 cut(s) 310, 517, 904, 1029
BstMWI GCNNNNNNNGC 4 cut(s) 374, 439, 588, 728
BstNSI RCATGY 1 cut(s) 742
BstSFI CTRYAG 3 cut(s) 261, 549, 819
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 921
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 10, 592
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 2 cut(s) 26, 916
CviAII CATG 4 cut(s) 509, 668, 739, 1005
CviJI RGCY 9 cut(s) 178, 238, 368, 554, 591, 707, 786, 816, 874
CviKI_1 RGCY 9 cut(s) 178, 238, 368, 554, 591, 707, 786, 816, 874
CviQI GTAC 2 cut(s) 26, 916
DdeI CTNAG 2 cut(s) 159, 787
DpnI GATC 4 cut(s) 312, 519, 906, 1031
DpnII GATC 4 cut(s) 310, 517, 904, 1029
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 512, 671, 742, 1008
FatI CATG 4 cut(s) 508, 667, 738, 1004
FauNDI CATATG 1 cut(s) 475
FblI GTMKAC 1 cut(s) 569
FokI GGATG 2 cut(s) 17, 579
FspBI CTAG 2 cut(s) 447, 866
GsuI CTGGAG 2 cut(s) 504, 708
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 239
Hin1II CATG 4 cut(s) 512, 671, 742, 1008
HincII GTYRAC 2 cut(s) 426, 744
HindII GTYRAC 2 cut(s) 426, 744
HinfI GANTC 4 cut(s) 77, 253, 566, 1001
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 426, 570, 744
Hpy188I TCNGA 3 cut(s) 82, 315, 890
Hpy188III TCNNGA 8 cut(s) 98, 308, 349, 363, 447, 524, 663, 725
Hpy8I GTNNAC 3 cut(s) 426, 570, 744
HpyAV CCTTC 3 cut(s) 214, 267, 937
HpyCH4III ACNGT 2 cut(s) 423, 638
HpyCH4IV ACGT 3 cut(s) 36, 54, 854
HpyCH4V TGCA 5 cut(s) 473, 614, 691, 731, 756
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 439, 588, 728
HpyF3I CTNAG 2 cut(s) 159, 787
HpySE526I ACGT 3 cut(s) 36, 54, 854
Hsp92II CATG 4 cut(s) 512, 671, 742, 1008
Kzo9I GATC 4 cut(s) 310, 517, 904, 1029
LmnI GCTCC 4 cut(s) 175, 704, 727, 871
LweI GCATC 2 cut(s) 678, 718
MaeI CTAG 2 cut(s) 447, 866
MaeII ACGT 3 cut(s) 36, 54, 854
MaeIII GTNAC 2 cut(s) 415, 638
MalI GATC 4 cut(s) 312, 519, 906, 1031
MboI GATC 4 cut(s) 310, 517, 904, 1029
MboII GAAGA 8 cut(s) 56, 161, 185, 293, 383, 473, 697, 892
MfeI CAATTG 2 cut(s) 583, 767
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 9 cut(s) 118, 209, 303, 318, 378, 583, 655, 767, 930
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 575, 1010
MmeI TCCRAC 3 cut(s) 365, 645, 808
MnlI CCTC 9 cut(s) 28, 98, 166, 367, 402, 531, 862, 884, 945
Mox20I TGGCCA 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 358
MscI TGGCCA 1 cut(s) 591
MseI TTAA 6 cut(s) 117, 212, 489, 578, 773, 990
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 591
MspI CCGG 1 cut(s) 239
MunI CAATTG 2 cut(s) 583, 767
MwoI GCNNNNNNNGC 4 cut(s) 374, 439, 588, 728
NdeI CATATG 1 cut(s) 475
NdeII GATC 4 cut(s) 310, 517, 904, 1029
NlaIII CATG 4 cut(s) 512, 671, 742, 1008
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 77, 253
PleI GAGTC 2 cut(s) 574, 1009
PpsI GAGTC 2 cut(s) 574, 1009
Psp1406I AACGTT 1 cut(s) 854
RsaI GTAC 2 cut(s) 27, 917
RsaNI GTAC 2 cut(s) 26, 916
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 6 cut(s) 117, 212, 489, 578, 773, 990
Sau3AI GATC 4 cut(s) 310, 517, 904, 1029
SchI GAGTC 2 cut(s) 575, 1010
SfaNI GCATC 2 cut(s) 678, 718
SfcI CTRYAG 3 cut(s) 261, 549, 819
SmiMI CAYNNNNRTG 1 cut(s) 513
Sse9I AATT 9 cut(s) 118, 209, 303, 318, 378, 583, 655, 767, 930
SspMI CTAG 2 cut(s) 447, 866
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 423, 638
TaiI ACGT 3 cut(s) 39, 57, 857
TaqI TCGA 2 cut(s) 564, 903
TasI AATT 9 cut(s) 118, 209, 303, 318, 378, 583, 655, 767, 930
TatI WGTACW 1 cut(s) 915
TfiI GAWTC 2 cut(s) 77, 253
Tru1I TTAA 6 cut(s) 117, 212, 489, 578, 773, 990
Tru9I TTAA 6 cut(s) 117, 212, 489, 578, 773, 990
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 162, 864
TspGWI ACGGA 1 cut(s) 938
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 2 cut(s) 303, 655
XbaI TCTAGA 1 cut(s) 446
XceI RCATGY 1 cut(s) 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 358
XspI CTAG 2 cut(s) 447, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.