Rh1DG056400

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017971
Physical Location & Seq
Reverse (-)
9107381 .. 9109746
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG056400.1

Sequence Viewer

Length: 1311 bp
ATGGAATCTCGCTATAAAAAGAAGAAAAAAGGAAGAAAACAGAAAGTACTTTTGAAAGCATCATTGAAGAAGAAGCTGAAATACAAGGGTCCTATATGTCACTATGTTGAGTTTGATAAAGATTCGAATGACATTAAGTGTACATGTCATTTGTTTGAGTTTAGAGGACTATTGTGTAGACACATAATCAGCGTATTGATTCAAAGAGGGTTGGCGACAGTTTCAAGTAAATATGTATTGACACGATGGAAGAAAAATCTGAAGAGAAGGTATAGTTTCATAAAAGGTTGTTATGATGACTCCAAGTTTAAAGAAGTGAGGACCCTTCAGAATAAAATGTTGGGAGCATTCCATGACCTTATAAACTTTGTTGAAGGTGAGGAGCTAACCGACATTGTTCTTCAAGGTATAAAAGAATTAAAAGCGAAGGTGCTTCAGTCCAAGCCGGTATCCAAGGTGAATCCCTCTACACGAACACCATCATTGGAAGAACCAATACCAACCAAAAAAATTCTTGATCCAAAAATTGTGAAACGAGTAGGTCGTCCAACATTCAAGAGAAAGATTTCTAGAGCCGAAGAGGCAATTCAAAAAGCAAAGAAAAGATGGCACAAGAGGAAAGTCACGCAGTCAACAATGCCAAATAAGCGTTCTAGAAAGATAGTAGAAGATGAGAATGCATATGATACTGGAGTTAATAACTCTACACCACCACATGACTATGATCCTCCCGAAACATCGAGCAACATCAACTCTACAGCTTTTAGAGTCAAGTCTACTCCATTAAGCAATTGTGGCCATCCCATTACACCACCAAATGCAAACTCCAACTTCTATATGGACAGTAACAATATGTCTCCAAATTTTTCAGGACATGGATTTCAAAATGTAAGCTCAGTTGATATACCAAACTCATCTATCGGCTCTGTAGAAGTTGGAAAGCAATGTGGAACAAATGAAACGACACCAAGCATAAGCATCCTCGAAAGACAAGTACTTGATTACGTATTCGATAAAAGTGTAGTACAGAAGAAGGAATTGGTTTCTTGCATAGATGGGTATTCCATAAATAGCAATGAGATTGCGACACTTCAAGGCTCAAATTGGTTGGGTAGCCAGGTGCTTAACATGTATATTAAGCTGATCAATCTTGACAGAGAGACTAATGATCGATATGTATTTCTCACATTCCTCGCGTTGATTATACTAGAGGAGCTATCAAAAGATTTTGGAGGGGTAATCTTCGATCATAAGATGTACTCCACTAACATAATTCCTCTTGCGAAGGTCGTAAAGCAAACAAATACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

436

Amino Acids

49.62

Weight (kDa)

9.69

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 38 - 69 1.8e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccI GTMKAC 2 cut(s) 178, 776
AccII CGCG 1 cut(s) 1196
AclWI GGATC 2 cut(s) 512, 719
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 2 cut(s) 510, 862
AcuI CTGAAG 3 cut(s) 281, 311, 419
AfaI GTAC 5 cut(s) 48, 142, 996, 1026, 1259
AflIII ACRYGT 2 cut(s) 143, 1128
AjnI CCWGG 1 cut(s) 1116
AjuI GAANNNNNNNTTGG 6 cut(s) 323, 355, 634, 666, 1022, 1054
AluBI AGCT 6 cut(s) 76, 385, 761, 894, 1141, 1216
AluI AGCT 6 cut(s) 76, 385, 761, 894, 1141, 1216
Alw26I GTCTC 2 cut(s) 861, 1154
AlwI GGATC 2 cut(s) 512, 719
AoxI GGCC 1 cut(s) 796
ApoI RAATTY 2 cut(s) 510, 862
Asp700I GAANNNNTTC 1 cut(s) 565
AspS9I GGNCC 2 cut(s) 89, 321
AsuHPI GGTGA 2 cut(s) 389, 469
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 89, 321
BaeI ACNNNNGTAYC 2 cut(s) 678, 711
BalI TGGCCA 1 cut(s) 798
BarI GAAGNNNNNNTAC 4 cut(s) 65, 97, 480, 512
BccI CCATC 5 cut(s) 240, 487, 600, 807, 1049
BciT130I CCWGG 1 cut(s) 1118
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 1 cut(s) 1143
BcoDI GTCTC 2 cut(s) 861, 1154
BfaI CTAG 3 cut(s) 570, 654, 1208
BfmI CTRYAG 2 cut(s) 756, 927
BfuI GTATCC 1 cut(s) 460
BglI GCCNNNNNGGC 1 cut(s) 581
BmcAI AGTACT 2 cut(s) 48, 996
Bme1390I CCNGG 1 cut(s) 1118
Bme18I GGWCC 2 cut(s) 89, 321
BmgT120I GGNCC 2 cut(s) 89, 321
BmiI GGNNCC 2 cut(s) 90, 323
BmrFI CCNGG 1 cut(s) 1118
BmsI GCATC 2 cut(s) 68, 987
BpmI CTGGAG 1 cut(s) 711
Bpu14I TTCGAA 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 1171
BsaAI YACGTR 2 cut(s) 1006, 1308
BsaJI CCNNGG 1 cut(s) 453
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 694
Bse3DI GCAATG 2 cut(s) 950, 1081
BseBI CCWGG 1 cut(s) 1118
BseCI ATCGAT 1 cut(s) 1171
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 799, 978
BseMI GCAATG 2 cut(s) 950, 1081
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 2 cut(s) 395, 1226
Bsh1236I CGCG 1 cut(s) 1196
BshFI GGCC 1 cut(s) 798
BshVI ATCGAT 1 cut(s) 1171
BsiSI CCGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 861, 1154
BsmI GAATGC 2 cut(s) 347, 682
BsnI GGCC 1 cut(s) 798
Bsp119I TTCGAA 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 5 cut(s) 517, 724, 1143, 1168, 1246
BspANI GGCC 1 cut(s) 798
BspCNI CTCAG 1 cut(s) 908
BspDI ATCGAT 1 cut(s) 1171
BspFNI CGCG 1 cut(s) 1196
BspLI GGNNCC 2 cut(s) 90, 323
BspPI GGATC 2 cut(s) 512, 719
BspT104I TTCGAA 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 950, 1081
BsrFI RCCGGY 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 1 cut(s) 694
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 5 cut(s) 517, 724, 1143, 1168, 1246
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 1118
Bst4CI ACNGT 2 cut(s) 220, 845
Bst6I CTCTTC 2 cut(s) 257, 573
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 2 cut(s) 1006, 1308
BstBI TTCGAA 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 895
BstF5I GGATG 2 cut(s) 799, 978
BstFNI CGCG 1 cut(s) 1196
BstKTI GATC 5 cut(s) 520, 727, 1146, 1171, 1249
BstMAI GTCTC 2 cut(s) 861, 1154
BstMBI GATC 5 cut(s) 517, 724, 1143, 1168, 1246
BstMWI GCNNNNNNNGC 3 cut(s) 581, 646, 795
BstNI CCWGG 1 cut(s) 1118
BstNSI RCATGY 2 cut(s) 147, 1132
BstSCI CCNGG 1 cut(s) 1116
BstSFI CTRYAG 2 cut(s) 756, 927
BstSNI TACGTA 2 cut(s) 1006, 1308
BstUI CGCG 1 cut(s) 1196
Bsu15I ATCGAT 1 cut(s) 1171
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 798
BsuTUI ATCGAT 1 cut(s) 1171
BtsCI GGATG 2 cut(s) 799, 978
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 89, 321
ClaI ATCGAT 1 cut(s) 1171
Csp6I GTAC 5 cut(s) 47, 141, 995, 1025, 1258
CviAII CATG 5 cut(s) 144, 353, 716, 875, 1129
CviQI GTAC 5 cut(s) 47, 141, 995, 1025, 1258
DdeI CTNAG 1 cut(s) 895
DpnI GATC 5 cut(s) 519, 726, 1145, 1170, 1248
DpnII GATC 5 cut(s) 517, 724, 1143, 1168, 1246
DraI TTTAAA 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 2 cut(s) 257, 573
EarI CTCTTC 2 cut(s) 257, 573
Eco105I TACGTA 2 cut(s) 1006, 1308
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 89, 321
Eco57I CTGAAG 3 cut(s) 281, 311, 419
EcoO109I RGGNCCY 2 cut(s) 89, 321
EcoRII CCWGG 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 453
EcoT22I ATGCAT 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 147, 356, 719, 878, 1132
FatI CATG 5 cut(s) 143, 352, 715, 874, 1128
FauNDI CATATG 1 cut(s) 682
FbaI TGATCA 1 cut(s) 1143
FblI GTMKAC 2 cut(s) 178, 776
FokI GGATG 2 cut(s) 786, 965
FspBI CTAG 3 cut(s) 570, 654, 1208
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 1 cut(s) 798
HapII CCGG 1 cut(s) 446
Hin1II CATG 5 cut(s) 147, 356, 719, 878, 1132
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 6 cut(s) 5, 122, 199, 299, 460, 768
HpaII CCGG 1 cut(s) 446
HphI GGTGA 2 cut(s) 389, 469
Hpy166II GTNNAC 4 cut(s) 141, 179, 633, 777
Hpy188I TCNGA 2 cut(s) 261, 330
Hpy188III TCNNGA 7 cut(s) 515, 556, 570, 654, 731, 870, 1151
Hpy8I GTNNAC 4 cut(s) 141, 179, 633, 777
HpyAV CCTTC 6 cut(s) 261, 335, 368, 421, 1027, 1279
HpyCH4III ACNGT 2 cut(s) 220, 845
HpyCH4IV ACGT 2 cut(s) 1005, 1307
HpyCH4V TGCA 3 cut(s) 680, 821, 1050
HpyF10VI GCNNNNNNNGC 3 cut(s) 581, 646, 795
HpyF3I CTNAG 1 cut(s) 895
HpySE526I ACGT 2 cut(s) 1005, 1307
Hsp92II CATG 5 cut(s) 147, 356, 719, 878, 1132
Ksp22I TGATCA 1 cut(s) 1143
Kzo9I GATC 5 cut(s) 517, 724, 1143, 1168, 1246
LmnI GCTCC 3 cut(s) 344, 382, 1213
LpnPI CCDG 5 cut(s) 459, 675, 855, 1103, 1130
LweI GCATC 2 cut(s) 68, 987
MaeI CTAG 3 cut(s) 570, 654, 1208
MaeII ACGT 2 cut(s) 1005, 1307
MaeIII GTNAC 3 cut(s) 98, 622, 845
MalI GATC 5 cut(s) 519, 726, 1145, 1170, 1248
MboI GATC 5 cut(s) 517, 724, 1143, 1168, 1246
MfeI CAATTG 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 798
MluCI AATT 9 cut(s) 416, 510, 525, 585, 790, 862, 1037, 1102, 1272
MluNI TGGCCA 1 cut(s) 798
MlyI GAGTC 2 cut(s) 293, 777
MmeI TCCRAC 3 cut(s) 572, 852, 916
Mox20I TGGCCA 1 cut(s) 798
Mph1103I ATGCAT 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 565
MscI TGGCCA 1 cut(s) 798
MseI TTAA 7 cut(s) 135, 309, 419, 696, 785, 1125, 1137
MslI CAYNNNNRTG 1 cut(s) 720
Msp20I TGGCCA 1 cut(s) 798
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 1118
MunI CAATTG 1 cut(s) 790
Mva1269I GAATGC 2 cut(s) 347, 682
MvaI CCWGG 1 cut(s) 1118
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 3 cut(s) 581, 646, 795
NdeI CATATG 1 cut(s) 682
NdeII GATC 5 cut(s) 517, 724, 1143, 1168, 1246
NlaIII CATG 5 cut(s) 147, 356, 719, 878, 1132
NlaIV GGNNCC 2 cut(s) 90, 323
NmuCI GTSAC 2 cut(s) 98, 622
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 147, 1132
NspV TTCGAA 1 cut(s) 125
PciI ACATGT 2 cut(s) 143, 1128
PcsI WCGNNNNNNNCGW 1 cut(s) 541
PctI GAATGC 2 cut(s) 347, 682
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 4 cut(s) 5, 122, 199, 460
PleI GAGTC 2 cut(s) 293, 776
PpsI GAGTC 2 cut(s) 293, 776
Ppu21I YACGTR 2 cut(s) 1006, 1308
PpuMI RGGWCCY 2 cut(s) 89, 321
PscI ACATGT 2 cut(s) 143, 1128
PsiI TTATAA 1 cut(s) 362
Psp5II RGGWCCY 2 cut(s) 89, 321
Psp6I CCWGG 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1116
PspN4I GGNNCC 2 cut(s) 90, 323
PspPI GGNCC 2 cut(s) 89, 321
PspPPI RGGWCCY 2 cut(s) 89, 321
RsaI GTAC 5 cut(s) 48, 142, 996, 1026, 1259
RsaNI GTAC 5 cut(s) 47, 141, 995, 1025, 1258
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 7 cut(s) 135, 309, 419, 696, 785, 1125, 1137
Sau3AI GATC 5 cut(s) 517, 724, 1143, 1168, 1246
Sau96I GGNCC 2 cut(s) 89, 321
ScaI AGTACT 2 cut(s) 48, 996
SchI GAGTC 2 cut(s) 293, 777
ScrFI CCNGG 1 cut(s) 1118
SfaNI GCATC 2 cut(s) 68, 987
SfcI CTRYAG 2 cut(s) 756, 927
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 2 cut(s) 89, 321
SmiMI CAYNNNNRTG 1 cut(s) 720
SnaBI TACGTA 2 cut(s) 1006, 1308
Sse9I AATT 9 cut(s) 416, 510, 525, 585, 790, 862, 1037, 1102, 1272
SspMI CTAG 3 cut(s) 570, 654, 1208
StyD4I CCNGG 1 cut(s) 1116
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 220, 845
TaiI ACGT 2 cut(s) 1008, 1310
TaqI TCGA 6 cut(s) 125, 740, 984, 1011, 1171, 1245
TasI AATT 9 cut(s) 416, 510, 525, 585, 790, 862, 1037, 1102, 1272
TatI WGTACW 5 cut(s) 46, 140, 994, 1024, 1257
TfiI GAWTC 4 cut(s) 5, 122, 199, 460
Tru1I TTAA 7 cut(s) 135, 309, 419, 696, 785, 1125, 1137
Tru9I TTAA 7 cut(s) 135, 309, 419, 696, 785, 1125, 1137
TseFI GTSAC 2 cut(s) 98, 622
Tsp45I GTSAC 2 cut(s) 98, 622
TspDTI ATGAA 2 cut(s) 268, 972
VpaK11BI GGWCC 2 cut(s) 89, 321
XapI RAATTY 2 cut(s) 510, 862
XbaI TCTAGA 2 cut(s) 569, 653
XceI RCATGY 2 cut(s) 147, 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XmiI GTMKAC 2 cut(s) 178, 776
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 3 cut(s) 570, 654, 1208
ZrmI AGTACT 2 cut(s) 48, 996
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.