Rh4DG412300

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017971
Physical Location & Seq
Forward (+)
62349252 .. 62349734
483 bp
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UTR
Exon/CDS
Intron
Rh4DG412300.1

Sequence Viewer

Length: 483 bp
ATGGGTGGAAATGATACCTCAAAAGTACCCTGCTACGTCAAGGAAGATGATGACGTGATTATATCAAACGAAGTTGAATCAGATGATGGAGATATTCCAAAAAGAGGAATGAGATTTAATTCTTATGATGGTTTGTATGATTATTGTGAAGATTATGCTAAGAAGTCAGGTTGGGCAATTAGAAAAAGATCCAACCCCAAAAAAGAGGGAGCAATTAAGTACGTCCAGCTTGTATGTTCAAGAGCATTGAGAGGTAAATCCCCTAAAGAAAGTGAGCCGATATCTTCACAGATAACTGGGTGTTTTGCGCGTATCCGAGCAGTGCTTAAGTCAGATGGGGAGTACAATTTGACCACAGTATGTCTAGAGCATAATCATCCATTGTGTCCAACAACAGCCAGACGTATAAGGCAATATAGAGAACTAGATCAACATTCAAAAGATAGGTTTTGGTTATTGAAAGAAGCAATTAATGAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

160

Amino Acids

18.39

Weight (kDa)

8.16

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 129 2.1e-10 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 310
AclWI GGATC 1 cut(s) 183
AfaI GTAC 3 cut(s) 27, 221, 344
AfiI CCNNNNNNNGG 1 cut(s) 104
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 77, 240, 438, 460
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
AlwI GGATC 1 cut(s) 183
AseI ATTAAT 1 cut(s) 471
AspLEI GCGC 1 cut(s) 310
BccI CCATC 3 cut(s) 80, 122, 329
BciVI GTATCC 1 cut(s) 323
BfaI CTAG 2 cut(s) 365, 425
BfrI CTTAAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 104
Bsp143I GATC 2 cut(s) 188, 427
BspFNI CGCG 1 cut(s) 310
BspPI GGATC 1 cut(s) 183
BspTI CTTAAG 1 cut(s) 326
BsrI ACTGG 1 cut(s) 301
BssMI GATC 2 cut(s) 188, 427
Bst4CI ACNGT 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 2 cut(s) 191, 430
BstMBI GATC 2 cut(s) 188, 427
BstUI CGCG 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuI GTATCC 1 cut(s) 323
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 376
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 26, 220, 343
CviJI RGCY 3 cut(s) 229, 277, 398
CviKI_1 RGCY 3 cut(s) 229, 277, 398
CviQI GTAC 3 cut(s) 26, 220, 343
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 190, 429
DpnII GATC 2 cut(s) 188, 427
Eco32I GATATC 1 cut(s) 282
EcoRV GATATC 1 cut(s) 282
FaiI YATR 9 cut(s) 62, 126, 138, 156, 235, 361, 372, 407, 417
FokI GGATG 1 cut(s) 363
FspBI CTAG 2 cut(s) 365, 425
GlaI GCGC 1 cut(s) 309
HhaI GCGC 1 cut(s) 310
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 82, 317, 334
Hpy188III TCNNGA 2 cut(s) 240, 365
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 4 cut(s) 36, 54, 222, 403
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 4 cut(s) 36, 54, 222, 403
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 2 cut(s) 188, 427
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 43, 153, 239, 282, 412
MaeI CTAG 2 cut(s) 365, 425
MaeII ACGT 4 cut(s) 36, 54, 222, 403
MalI GATC 2 cut(s) 190, 429
MboI GATC 2 cut(s) 188, 427
MboII GAAGA 3 cut(s) 56, 161, 276
MflI RGATCY 1 cut(s) 188
MluCI AATT 5 cut(s) 118, 177, 213, 346, 468
MmeI TCCRAC 2 cut(s) 216, 413
MnlI CCTC 4 cut(s) 28, 98, 199, 245
MseI TTAA 4 cut(s) 117, 216, 327, 471
MspCI CTTAAG 1 cut(s) 326
MvnI CGCG 1 cut(s) 310
NdeII GATC 2 cut(s) 188, 427
PfeI GAWTC 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 471
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 3 cut(s) 27, 221, 344
RsaNI GTAC 3 cut(s) 26, 220, 343
SaqAI TTAA 4 cut(s) 117, 216, 327, 471
Sau3AI GATC 2 cut(s) 188, 427
SetI ASST 9 cut(s) 20, 39, 57, 172, 225, 231, 256, 406, 449
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 5 cut(s) 118, 177, 213, 346, 468
SspI AATATT 1 cut(s) 479
SspMI CTAG 2 cut(s) 365, 425
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 4 cut(s) 39, 57, 225, 406
TasI AATT 5 cut(s) 118, 177, 213, 346, 468
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 4 cut(s) 117, 216, 327, 471
Tru9I TTAA 4 cut(s) 117, 216, 327, 471
TscAI CASTG 1 cut(s) 327
TspRI CASTG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 326
VspI ATTAAT 1 cut(s) 471
XbaI TCTAGA 1 cut(s) 364
XspI CTAG 2 cut(s) 365, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.