Rh1AG047900

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017971
Physical Location & Seq
Reverse (-)
8223204 .. 8249031
25828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG047900.1

Sequence Viewer

Length: 909 bp
ATGAGATTTAATTCTTATGATGGTATGTATGATTATTGTGAAGATTATGCTAAGAAGTCAGGTTGGGCAATTAGAAAAAGATCCAACCCCAAAAAAGAGGGAGCAATTAAGTACGTCCAGCTTGTATGTTCAAGAGCATTGAGAGGTAAATCCCCTAAAGAAAGTGAGCCGAAATCTTCACAGATAACTGGGTGTTTTGCGCGTATCCGAGCAGTGTTAAAGTCAGATGGGGAGTACAATTTGACCACAACACATAATCAGCATACTGATTCAAACAGGGTCGGCGACAGAGTATTGACACGATGGAAGAAAAATCTGAAGAGAAGGTATTGTTTCATAAAAGGTTGTTATGATGACTCCAAATTTATAGAAGTGAGGACCCTTCAGAATAAAATGTTGGAAGCATTCCATGACCTTATAAACTTTGTTGAAGGTGAGGAGCTAACCGACATTGTTCTTCAAGGTATAAAAGAATTAAAAGCGAAGGTGCTTCAGTCCAAGCTGGTATCCAAGGTGAATCCCTCTACACGAACACCATCATTGGAAGAACCAATACCAACCAAAAACATTCTTGATCCGAAAATTGTGAAACGAGTAGGTTGTCCAACATTCAAGGGAAAGATTTCCAGAGCCGAAGAGGCAATTCAAAAAGAAAAGAAAAGATGGCACAAGAGGAAAGTCACGCAGTCAACAATGCCAAATAAGTTGATTATACTAGAGGAGCTATCTAAAGATTTTGGAGGGGTAATCTTCGATCATAAGATGTACTCCACTGACATAATTCCTCTTGCGAAGGTCGTAAATTCGGATTGTGGAGTAGTGTTGATTAAAATAATGGAGTCATGGTATGGTAAAATGACCACAGAGATCAATAAGTACAGTTTGACAATATCATCAAGGGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

302

Amino Acids

34.73

Weight (kDa)

9.58

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 12 - 88 2e-06 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
AccII CGCG 1 cut(s) 202
AclWI GGATC 2 cut(s) 75, 569
AcsI RAATTY 2 cut(s) 362, 802
AcuI CTGAAG 3 cut(s) 338, 368, 476
AfaI GTAC 4 cut(s) 113, 236, 767, 878
AgsI TTSAA 6 cut(s) 132, 273, 431, 461, 613, 647
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 4 cut(s) 121, 442, 502, 724
AluI AGCT 4 cut(s) 121, 442, 502, 724
AlwI GGATC 2 cut(s) 75, 569
ApoI RAATTY 2 cut(s) 362, 802
Asp700I GAANNNNTTC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 446, 526
AvaII GGWCC 1 cut(s) 378
BarI GAAGNNNNNNTAC 2 cut(s) 537, 569
BccI CCATC 5 cut(s) 14, 221, 297, 544, 657
BciVI GTATCC 2 cut(s) 215, 517
BfaI CTAG 1 cut(s) 716
BfuI GTATCC 2 cut(s) 215, 517
BglI GCCNNNNNGGC 1 cut(s) 638
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 510
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 510
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 452, 734
Bsh1236I CGCG 1 cut(s) 202
BsmI GAATGC 1 cut(s) 404
Bsp143I GATC 4 cut(s) 80, 574, 754, 867
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 2 cut(s) 75, 569
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 4 cut(s) 80, 574, 754, 867
BssT1I CCWWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 881
Bst6I CTCTTC 2 cut(s) 314, 630
BstDEI CTNAG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 4 cut(s) 83, 577, 757, 870
BstMBI GATC 4 cut(s) 80, 574, 754, 867
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstUI CGCG 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuI GTATCC 2 cut(s) 215, 517
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 771
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 4 cut(s) 112, 235, 766, 877
CviAII CATG 2 cut(s) 410, 843
CviJI RGCY 6 cut(s) 121, 169, 442, 502, 632, 724
CviKI_1 RGCY 6 cut(s) 121, 169, 442, 502, 632, 724
CviQI GTAC 4 cut(s) 112, 235, 766, 877
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 82, 576, 756, 869
DpnII GATC 4 cut(s) 80, 574, 754, 867
Eam1104I CTCTTC 2 cut(s) 314, 630
EarI CTCTTC 2 cut(s) 314, 630
Eco130I CCWWGG 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 3 cut(s) 338, 368, 476
EcoO109I RGGNCCY 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 2 cut(s) 413, 846
FatI CATG 2 cut(s) 409, 842
FspBI CTAG 1 cut(s) 716
GlaI GCGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 413, 846
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HinfI GANTC 4 cut(s) 269, 356, 517, 839
HphI GGTGA 2 cut(s) 446, 526
Hpy166II GTNNAC 1 cut(s) 690
Hpy188I TCNGA 6 cut(s) 209, 226, 318, 387, 579, 808
Hpy188III TCNNGA 3 cut(s) 132, 572, 627
Hpy8I GTNNAC 1 cut(s) 690
HpyAV CCTTC 5 cut(s) 318, 392, 425, 478, 787
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 413, 846
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 4 cut(s) 80, 574, 754, 867
LmnI GCTCC 3 cut(s) 101, 439, 721
LpnPI CCDG 6 cut(s) 45, 131, 174, 262, 488, 640
MaeI CTAG 1 cut(s) 716
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 679
MalI GATC 4 cut(s) 82, 576, 756, 869
MboI GATC 4 cut(s) 80, 574, 754, 867
MboII GAAGA 8 cut(s) 53, 168, 319, 331, 449, 557, 647, 742
MflI RGATCY 1 cut(s) 80
MlyI GAGTC 2 cut(s) 350, 848
MmeI TCCRAC 3 cut(s) 108, 378, 629
MroXI GAANNNNTTC 1 cut(s) 622
MseI TTAA 5 cut(s) 9, 108, 218, 476, 828
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 638
NdeII GATC 4 cut(s) 80, 574, 754, 867
NlaIII CATG 2 cut(s) 413, 846
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 679
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 2 cut(s) 269, 517
PleI GAGTC 2 cut(s) 350, 847
PpsI GAGTC 2 cut(s) 350, 847
PpuMI RGGWCCY 1 cut(s) 378
PsiI TTATAA 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 378
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 4 cut(s) 113, 236, 767, 878
RsaNI GTAC 4 cut(s) 112, 235, 766, 877
SaqAI TTAA 5 cut(s) 9, 108, 218, 476, 828
Sau3AI GATC 4 cut(s) 80, 574, 754, 867
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 2 cut(s) 350, 848
SinI GGWCC 1 cut(s) 378
SspMI CTAG 1 cut(s) 716
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 753
TatI WGTACW 3 cut(s) 234, 765, 876
TfiI GAWTC 2 cut(s) 269, 517
Tru1I TTAA 5 cut(s) 9, 108, 218, 476, 828
Tru9I TTAA 5 cut(s) 9, 108, 218, 476, 828
TscAI CASTG 2 cut(s) 219, 778
TseFI GTSAC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 1 cut(s) 325
TspRI CASTG 2 cut(s) 219, 778
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 2 cut(s) 362, 802
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.