Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017971

Physical Location & Seq

Genomic Coordinates Reverse (-)

9641108 .. 9651289

Gene Structure 10182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGAATCTCGCTATAAAAAGAAGAAAAAAGGAAGAAAACAGAAAGTACTTTTGAAAGCATCATTGAAGAAGAAGCTGAAATACAAGGGTCCTATATGTCACTATGTTGAGTTTGATAAAGATTCGAATGACATTAAGTGTACATGTCATTTGTTTGAGTTTAGAGGACTATTGTGTAGACACATAATCAGCGTATTGATTCAAAGAGGGTTGGCGACAGTTTCAAGTAAATATGTATTGACACGATGGAAGAAAAATCTGAAGAGAAGGTATAGTTTCATAAAAGGTTGTTATGATGACTCCAAGTTTAAAGAAGTGAGGACCCTTCAGAATAAAATGTTGGGAGCATTCCATGACCTTATAAACTTTGTTGAAGGTGAGGAGCTAACCGACATTGTTCTTCAAGGTATAAAAGAATTAAAAGCGAAGGTGCTTCAGTCCAAGCCGGTATCCAAGGTGAATCCCTCTACACGAACACCATCATTGGAAGAACCAATACCAACCAAAAAAATTCTTGATCCAAAAATTGTGAAACGAGTAGGTCGTCCAACATTCAAGAGAAAGATTTCTAGAGCCGAAGAGGCAATTCAAAAAGCAAAGAAAAGATGGCACAAGAGGAAAGTCACGCAGTCAACAATGCCAAATAAGCGTTCTAGAAAGATAGTAGAAGATGAGAATGCATATGATACTGGAGTTAATAACTCTACACCACCACATGACTATGATCCTCCCGAAACATCGAGCAACATCAACTCTACAGCTTTTAGAGTCAAGTCTACTCCATTAAGCAATTGTGGCCATCCCATTACACCACCAAATGCAAACTCCAACTTCTATATGGACAGTAACAATATGTCTCCAAATTTTTCAGGACATGGATTTCAAAATGTAAGCTCAGTTGATATACCAAACTCATCTATCGGCTCTGTAGAAGTTGGAAAGCAATGTGGAACAAATGAAACGACACCAAGCATAAGCATCCTCGAAAGACAAGTACTTGATTACGTATTCGATAAAAGTGTAGTACAGAAGAAGGAATTGGTTTCTTGCATAGATGGGTATTCCATAAATAGCAATGAGATTGCGACACTTCAAGGCTCAAATTGGTTGGGTAGCCAGTTGATTTTTCCAATATGCTTGCACTCGCATTGGTTGGCTTTTACTATTAATTTGACGGAGCACAGGATTGAGATACTGGATTCCTTATTTGACAAAATGTTGCCTGGACTTGACAAAATCATAGATGGATTGATTATACTAGAGGAGCTATCAAAAGATTTTGGAGGGGTAATCTTCGATCATAAGATGTACTCCACTAACATAATTCCTCTTGCGAAGGTCGTAAAGCAAACAAATACTTGGGATTGTGGAGTATTGTTGATTAAAATAATGGAGTCATGGTATGGTAAAATGACCACAGAGATCAATAAGTACAATTTGACAATATCATCAAGGGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

487

Amino Acids

55.43

Weight (kDa)

9.5

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	38 - 69	2e-07	SWIM zinc finger
Peptidase_C48	PF02902	374 - 466	4.3e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017971)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26761
rosa_multiflora	Rmu_sc0001168.1_g000004 Rmu_sc0001836.1_g000051 Rmu_sc0002798.1_g000008
rosa_samantha	Rh1AG047900 Rh1CG052200 Rh1DG056400 Rh2AG333300 Rh4DG412300 Rh5AG276700 Rh6AG081600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccI	GTMKAC	2 cut(s)	178, 776
AclWI	GGATC	2 cut(s)	512, 719
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	510, 862
AcuI	CTGAAG	3 cut(s)	281, 311, 419
AfaI	GTAC	6 cut(s)	48, 142, 996, 1026, 1310, 1433
AflIII	ACRYGT	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	1222
AjuI	GAANNNNNNNTTGG	6 cut(s)	323, 355, 634, 666, 1022, 1054
AluBI	AGCT	5 cut(s)	76, 385, 761, 894, 1267
AluI	AGCT	5 cut(s)	76, 385, 761, 894, 1267
Alw21I	GWGCWC	1 cut(s)	1182
Alw26I	GTCTC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	512, 719
AoxI	GGCC	1 cut(s)	796
ApoI	RAATTY	2 cut(s)	510, 862
AseI	ATTAAT	1 cut(s)	1167
Asp700I	GAANNNNTTC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	89, 321
AsuHPI	GGTGA	2 cut(s)	389, 469
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	89, 321
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BalI	TGGCCA	1 cut(s)	798
BarI	GAAGNNNNNNTAC	4 cut(s)	65, 97, 480, 512
Bbv12I	GWGCWC	1 cut(s)	1182
BccI	CCATC	6 cut(s)	240, 487, 600, 807, 1049, 1238
BciT130I	CCWGG	1 cut(s)	1224
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	3 cut(s)	570, 654, 1259
BfmI	CTRYAG	2 cut(s)	756, 927
BfuI	GTATCC	1 cut(s)	460
BglI	GCCNNNNNGGC	1 cut(s)	581
BmcAI	AGTACT	2 cut(s)	48, 996
Bme1390I	CCNGG	1 cut(s)	1224
Bme18I	GGWCC	2 cut(s)	89, 321
BmgT120I	GGNCC	2 cut(s)	89, 321
BmiI	GGNNCC	2 cut(s)	90, 323
BmrFI	CCNGG	1 cut(s)	1224
BmsI	GCATC	2 cut(s)	68, 987
BpmI	CTGGAG	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	1006
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	1385, 1415
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	694, 1117, 1200
Bse3DI	GCAATG	2 cut(s)	950, 1081
BseBI	CCWGG	1 cut(s)	1224
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	2 cut(s)	799, 978
BseMI	GCAATG	2 cut(s)	950, 1081
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	694, 1117, 1200
BseRI	GAGGAG	2 cut(s)	395, 1277
BshFI	GGCC	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	1182
BsiSI	CCGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	861
BsmI	GAATGC	2 cut(s)	347, 682
BsnI	GGCC	1 cut(s)	798
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	1182
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	517, 724, 1297, 1422
BspANI	GGCC	1 cut(s)	798
BspCNI	CTCAG	1 cut(s)	908
BspLI	GGNNCC	2 cut(s)	90, 323
BspPI	GGATC	2 cut(s)	512, 719
BspT104I	TTCGAA	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	950, 1081
BsrFI	RCCGGY	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	694, 1117, 1200
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	4 cut(s)	517, 724, 1297, 1422
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	1224
Bst4CI	ACNGT	2 cut(s)	220, 845
Bst6I	CTCTTC	2 cut(s)	257, 573
BstAUI	TGTACA	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	1006
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	1139
BstDEI	CTNAG	1 cut(s)	895
BstF5I	GGATG	2 cut(s)	799, 978
BstKTI	GATC	4 cut(s)	520, 727, 1300, 1425
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	4 cut(s)	517, 724, 1297, 1422
BstMWI	GCNNNNNNNGC	3 cut(s)	581, 646, 795
BstNI	CCWGG	1 cut(s)	1224
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	1222
BstSFI	CTRYAG	2 cut(s)	756, 927
BstSNI	TACGTA	1 cut(s)	1006
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	798
BtsCI	GGATG	2 cut(s)	799, 978
Cac8I	GCNNGC	1 cut(s)	1139
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	89, 321
Csp6I	GTAC	6 cut(s)	47, 141, 995, 1025, 1309, 1432
CviAII	CATG	5 cut(s)	144, 353, 716, 875, 1398
CviQI	GTAC	6 cut(s)	47, 141, 995, 1025, 1309, 1432
DdeI	CTNAG	1 cut(s)	895
DpnI	GATC	4 cut(s)	519, 726, 1299, 1424
DpnII	GATC	4 cut(s)	517, 724, 1297, 1422
DraI	TTTAAA	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	257, 573
EarI	CTCTTC	2 cut(s)	257, 573
Eco105I	TACGTA	1 cut(s)	1006
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	89, 321
Eco57I	CTGAAG	3 cut(s)	281, 311, 419
EcoO109I	RGGNCCY	2 cut(s)	89, 321
EcoRII	CCWGG	1 cut(s)	1222
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	5 cut(s)	147, 356, 719, 878, 1401
FatI	CATG	5 cut(s)	143, 352, 715, 874, 1397
FauNDI	CATATG	1 cut(s)	682
FblI	GTMKAC	2 cut(s)	178, 776
FokI	GGATG	2 cut(s)	786, 965
FspBI	CTAG	3 cut(s)	570, 654, 1259
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	798
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	5 cut(s)	147, 356, 719, 878, 1401
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HinfI	GANTC	8 cut(s)	5, 122, 199, 299, 460, 768, 1199, 1394
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	2 cut(s)	389, 469
Hpy166II	GTNNAC	4 cut(s)	141, 179, 633, 777
Hpy188I	TCNGA	2 cut(s)	261, 330
Hpy188III	TCNNGA	6 cut(s)	515, 556, 570, 654, 731, 870
Hpy8I	GTNNAC	4 cut(s)	141, 179, 633, 777
HpyAV	CCTTC	6 cut(s)	261, 335, 368, 421, 1027, 1330
HpyCH4III	ACNGT	2 cut(s)	220, 845
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	4 cut(s)	680, 821, 1050, 1141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	581, 646, 795
HpyF3I	CTNAG	1 cut(s)	895
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	5 cut(s)	147, 356, 719, 878, 1401
Kzo9I	GATC	4 cut(s)	517, 724, 1297, 1422
LmnI	GCTCC	4 cut(s)	344, 382, 1177, 1264
LpnPI	CCDG	8 cut(s)	459, 675, 855, 1130, 1168, 1181, 1209, 1236
LweI	GCATC	2 cut(s)	68, 987
MaeI	CTAG	3 cut(s)	570, 654, 1259
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	3 cut(s)	98, 622, 845
MalI	GATC	4 cut(s)	519, 726, 1299, 1424
MboI	GATC	4 cut(s)	517, 724, 1297, 1422
MfeI	CAATTG	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	1182
MlsI	TGGCCA	1 cut(s)	798
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	3 cut(s)	293, 777, 1403
MmeI	TCCRAC	3 cut(s)	572, 852, 916
Mox20I	TGGCCA	1 cut(s)	798
Mph1103I	ATGCAT	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	7 cut(s)	135, 309, 419, 696, 785, 1167, 1383
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	798
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	1224
MunI	CAATTG	1 cut(s)	790
Mva1269I	GAATGC	2 cut(s)	347, 682
MvaI	CCWGG	1 cut(s)	1224
MwoI	GCNNNNNNNGC	3 cut(s)	581, 646, 795
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	4 cut(s)	517, 724, 1297, 1422
NlaIII	CATG	5 cut(s)	147, 356, 719, 878, 1401
NlaIV	GGNNCC	2 cut(s)	90, 323
NmuCI	GTSAC	2 cut(s)	98, 622
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	125
PciI	ACATGT	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PctI	GAATGC	2 cut(s)	347, 682
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	5 cut(s)	5, 122, 199, 460, 1199
PleI	GAGTC	3 cut(s)	293, 776, 1402
PpsI	GAGTC	3 cut(s)	293, 776, 1402
Ppu21I	YACGTR	1 cut(s)	1006
PpuMI	RGGWCCY	2 cut(s)	89, 321
PscI	ACATGT	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	1167
PsiI	TTATAA	1 cut(s)	362
Psp5II	RGGWCCY	2 cut(s)	89, 321
Psp6I	CCWGG	1 cut(s)	1222
PspGI	CCWGG	1 cut(s)	1222
PspN4I	GGNNCC	2 cut(s)	90, 323
PspPI	GGNCC	2 cut(s)	89, 321
PspPPI	RGGWCCY	2 cut(s)	89, 321
RsaI	GTAC	6 cut(s)	48, 142, 996, 1026, 1310, 1433
RsaNI	GTAC	6 cut(s)	47, 141, 995, 1025, 1309, 1432
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	7 cut(s)	135, 309, 419, 696, 785, 1167, 1383
Sau3AI	GATC	4 cut(s)	517, 724, 1297, 1422
Sau96I	GGNCC	2 cut(s)	89, 321
ScaI	AGTACT	2 cut(s)	48, 996
SchI	GAGTC	3 cut(s)	293, 777, 1403
ScrFI	CCNGG	1 cut(s)	1224
SduI	GDGCHC	1 cut(s)	1182
SfaNI	GCATC	2 cut(s)	68, 987
SfcI	CTRYAG	2 cut(s)	756, 927
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	2 cut(s)	89, 321
SmiMI	CAYNNNNRTG	1 cut(s)	720
SnaBI	TACGTA	1 cut(s)	1006
SspMI	CTAG	3 cut(s)	570, 654, 1259
StyD4I	CCNGG	1 cut(s)	1222
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	220, 845
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	5 cut(s)	125, 740, 984, 1011, 1296
TatI	WGTACW	6 cut(s)	46, 140, 994, 1024, 1308, 1431
TfiI	GAWTC	5 cut(s)	5, 122, 199, 460, 1199
Tru1I	TTAA	7 cut(s)	135, 309, 419, 696, 785, 1167, 1383
Tru9I	TTAA	7 cut(s)	135, 309, 419, 696, 785, 1167, 1383
TseFI	GTSAC	2 cut(s)	98, 622
Tsp45I	GTSAC	2 cut(s)	98, 622
TspDTI	ATGAA	2 cut(s)	268, 972
TspGWI	ACGGA	1 cut(s)	1190
VpaK11BI	GGWCC	2 cut(s)	89, 321
VspI	ATTAAT	1 cut(s)	1167
XapI	RAATTY	2 cut(s)	510, 862
XbaI	TCTAGA	2 cut(s)	569, 653
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XmiI	GTMKAC	2 cut(s)	178, 776
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	3 cut(s)	570, 654, 1259
ZrmI	AGTACT	2 cut(s)	48, 996
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.