FvH4_2g00310

Uncharacterized protein conserved in bacteria (DUF2062)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007285
Physical Location & Seq
Reverse (-)
411848 .. 414288
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00310.t1

Sequence Viewer

Length: 591 bp
ATGGCGAATTTGGGGTTGATCACCACCTGGTTCAACAAGAAGATCGTCGAGCCTCTCCTCGAAATCCTTCGCAGGGGCGCCGAGCCTAAGCTATTGGCCTTCTCTGCAGCTGTTGGCTTTACCATCGGACTGTTTCCAATCTGCGGGACTACTGTGATTCTCTCTGGCTTGGCTATTGCATCTCTTGGATCCCGCTGCCATGCCCCAACTGTCATGCTCATTAATCTCATTGCTACACCTGTTGAACTCAGTTTGATGGTACCCTTCTTGCGCTTTGGTGAATACGTCACTGGTGGACCTCATTTTCCGCTGACTTCTGATGCTTTGAAGAAAGTTCTAACCCTCCAAGCTTCACAAGAAGTCTTATTAAGTATTGCTCATGCGTTGTTGGGATGGCTTGTTGCGGCACCTTTTATTTTCGCCGCAGTGTATGTACTCTCTTTACCATTGTTTAAGGTGTTGGTTCACAAGTTCAGCAAAGGTCCTTCGAGCCCAAAGAGACCACTTTCTCCATCAGATGTCAGGCTTAAGATTTGCTTGCAAGAGGGAGGACAAGATGACATGGATGAGTTGGAAGAGTGTCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2062

Protein Analysis

197

Amino Acids

21.16

Weight (kDa)

7.7

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2062 PF09835 19 - 157 7.6e-08 Uncharacterized protein conserved in bacteria (DUF2062)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 3 cut(s) 77, 259, 406
AciI CCGC 5 cut(s) 144, 193, 308, 404, 423
AclWI GGATC 2 cut(s) 183, 196
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 261, 435
AfiI CCNNNNNNNGG 2 cut(s) 73, 143
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 3 cut(s) 34, 245, 328
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 91, 110, 350
AluI AGCT 3 cut(s) 91, 110, 350
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 2 cut(s) 183, 196
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 107, 195
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 66
Asp718I GGTACC 1 cut(s) 259
AspLEI GCGC 2 cut(s) 80, 273
AspS9I GGNCC 2 cut(s) 296, 482
AsuHPI GGTGA 2 cut(s) 13, 290
AvaII GGWCC 2 cut(s) 296, 482
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 3 cut(s) 77, 259, 406
BanII GRGCYC 1 cut(s) 494
BbvI GCAGC 2 cut(s) 119, 182
BccI CCATC 4 cut(s) 131, 250, 387, 520
BciT130I CCWGG 1 cut(s) 28
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 493
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 4 cut(s) 108, 196, 405, 423
BlsI GCNGC 4 cut(s) 109, 197, 406, 424
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 2 cut(s) 296, 482
BmgT120I GGNCC 2 cut(s) 296, 482
BmiI GGNNCC 4 cut(s) 79, 190, 261, 408
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 188, 310
Bpu10I CCTNAGC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 493
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 143
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 398, 571
BseLI CCNNNNNNNGG 2 cut(s) 73, 143
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 119, 182
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 3 cut(s) 77, 259, 406
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 73, 143
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 3 cut(s) 18, 42, 188
BspACI CCGC 5 cut(s) 144, 193, 308, 404, 423
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 79, 190, 261, 408
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 183, 196
BspT107I GGYRCC 3 cut(s) 77, 259, 406
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 295
BssMI GATC 3 cut(s) 18, 42, 188
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 3 cut(s) 132, 154, 211
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 87, 248
BstF5I GGATG 2 cut(s) 398, 571
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 273
BstKTI GATC 3 cut(s) 21, 45, 191
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 3 cut(s) 18, 42, 188
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 119, 182
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 398, 571
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 288, 432
Cac8I GCNNGC 1 cut(s) 539
CfoI GCGC 2 cut(s) 80, 273
Cfr13I GGNCC 2 cut(s) 296, 482
CsiI ACCWGGT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 260, 434
CviAII CATG 4 cut(s) 200, 214, 380, 562
CviQI GTAC 2 cut(s) 260, 434
DdeI CTNAG 2 cut(s) 87, 248
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 20, 44, 190
DpnII GATC 3 cut(s) 18, 42, 188
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 296, 482
EcoO109I RGGNCCY 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 494
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
FaeI CATG 4 cut(s) 203, 217, 383, 565
FaiI YATR 6 cut(s) 201, 215, 381, 432, 563, 589
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 160
FatI CATG 4 cut(s) 199, 213, 379, 561
FauI CCCGC 2 cut(s) 137, 200
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 108, 196, 405, 423
FokI GGATG 2 cut(s) 405, 578
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 4 cut(s) 108, 196, 405, 423
GlaI GCGC 2 cut(s) 79, 272
GluI GCNGC 4 cut(s) 108, 196, 405, 423
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 2 cut(s) 80, 273
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 4 cut(s) 203, 217, 383, 565
Hin6I GCGC 2 cut(s) 78, 271
HinP1I GCGC 2 cut(s) 78, 271
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 1 cut(s) 157
HphI GGTGA 2 cut(s) 13, 290
Hpy166II GTNNAC 2 cut(s) 296, 466
Hpy188I TCNGA 3 cut(s) 128, 319, 517
Hpy8I GTNNAC 2 cut(s) 296, 466
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 77, 109, 274, 495
HpyCH4III ACNGT 3 cut(s) 132, 154, 211
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 107, 179, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 87, 248
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 4 cut(s) 203, 217, 383, 565
HspAI GCGC 2 cut(s) 78, 271
KasI GGCGCC 1 cut(s) 77
KpnI GGTACC 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 42, 188
LpnPI CCDG 7 cut(s) 13, 40, 58, 150, 252, 276, 508
Lsp1109I GCAGC 2 cut(s) 119, 182
LweI GCATC 2 cut(s) 188, 310
MabI ACCWGGT 1 cut(s) 26
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 20, 44, 190
MboI GATC 3 cut(s) 18, 42, 188
MboII GAAGA 3 cut(s) 52, 340, 587
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 494
MluCI AATT 1 cut(s) 7
Mly113I GGCGCC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 6 cut(s) 63, 68, 309, 353, 538, 542
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 222, 368, 453, 528
MspA1I CMGCKG 3 cut(s) 110, 195, 310
MspCI CTTAAG 1 cut(s) 527
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 104
NarI GGCGCC 1 cut(s) 78
NdeII GATC 3 cut(s) 18, 42, 188
NlaIII CATG 4 cut(s) 203, 217, 383, 565
NlaIV GGNNCC 4 cut(s) 79, 190, 261, 408
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 4 cut(s) 109, 197, 406, 424
PluTI GGCGCC 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 4 cut(s) 79, 190, 261, 408
PspPI GGNCC 2 cut(s) 296, 482
PspPPI RGGWCCY 1 cut(s) 482
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 261, 435
RsaNI GTAC 2 cut(s) 260, 434
SaqAI TTAA 4 cut(s) 222, 368, 453, 528
SatI GCNGC 4 cut(s) 108, 196, 405, 423
Sau3AI GATC 3 cut(s) 18, 42, 188
Sau96I GGNCC 2 cut(s) 296, 482
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 494
SexAI ACCWGGT 1 cut(s) 26
SfaNI GCATC 2 cut(s) 188, 310
SfcI CTRYAG 1 cut(s) 105
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 2 cut(s) 296, 482
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 1 cut(s) 7
SsiI CCGC 5 cut(s) 144, 193, 308, 404, 423
SspDI GGCGCC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 3 cut(s) 132, 154, 211
TaiI ACGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 48, 60, 488
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 433
TauI GCSGC 2 cut(s) 407, 425
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 4 cut(s) 222, 368, 453, 528
Tru9I TTAA 4 cut(s) 222, 368, 453, 528
TscAI CASTG 2 cut(s) 295, 432
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 2 cut(s) 107, 195
Tsp45I GTSAC 1 cut(s) 286
TspRI CASTG 2 cut(s) 295, 432
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 296, 482
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.