Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007285

Physical Location & Seq

Genomic Coordinates Reverse (-)

166196 .. 167950

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGGCAGCTGGTAATGGGGTGTCGATTTGGTTCAAGAACAAGGTGGTCGATCCCCTCCTCGAAATCCTCCGCAGGGGTGCAGAACCTAAGCTGTTGGCCTTCTCTGCAGCTCTTGGCCTTACCATTGGATTGTTTCCAATATGCGGGACAACTGTGGTTCTGTGTGGAATGGTAATTGCATTGCTGGGATCGCATTGCCATGCTCCAACTGTCATGCTGGCTAATGTCCTTGCTACACCAATAGAGCTGAGTTTGGTTGTACCTTTCTTGCGCTTTGGTGAACTTATCTCTGGTGGAGCTCATTTTCCTTTAACTTCTGACGCTTTCAAGAAAGTGTTAACTGGCCAAGCTTCATATGAGGTCTTAATAAGTATTGCGCATGCGTTGTTGGGATGGCTTGTTGCAGCTCCCTTAATTTTTGCAGCTCTGTACATAGTCTTTTTACCATGTTTTAAGGTGCTGGTTCCCAAGTTCAGTGCTGTTCCTTTGAGCCCAAAGAAATCAATTTCACCCACAGAAGTCAGGCTTAAGGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2062

Protein Analysis

181

Amino Acids

19.02

Weight (kDa)

9.36

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33490 AT1G33490 AT1G33490
fragaria_vesca	FvH4_2g00310
malus_domestica	MD05G1006100.v1.1 MD10G1002100.v1.1
prunus_persica	Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1
pyrus_communis	pycom05g00130 pycom10g00190
rosa_chinensis	RchiOBHm_Chr6g0249591
rosa_laevigata	RLG00000015559
rosa_multiflora	Rmu_sc0006936.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217500
rosa_rugosa	Rorug05G0493900 Rorug05G0494000 Rorug05G0494000
rosa_samantha	Rh3BG322400 Rh6AG003700 Rh6BG006500 Rh6CG002800 Rh6DG002600
rosa_wichuraiana	Rw6G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
AciI	CCGC	3 cut(s)	5, 73, 147
AclWI	GGATC	2 cut(s)	47, 199
AcoI	YGGCCR	1 cut(s)	346
AfaI	GTAC	2 cut(s)	264, 434
AfiI	CCNNNNNNNGG	2 cut(s)	76, 146
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	37, 331
AluBI	AGCT	8 cut(s)	11, 94, 113, 250, 302, 353, 410, 428
AluI	AGCT	8 cut(s)	11, 94, 113, 250, 302, 353, 410, 428
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	47, 199
AoxI	GGCC	3 cut(s)	99, 118, 346
ApeKI	GCWGC	4 cut(s)	8, 110, 407, 425
AspLEI	GCGC	2 cut(s)	276, 382
AsuHPI	GGTGA	2 cut(s)	293, 504
BalI	TGGCCA	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	304, 497
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	20, 122, 419, 437
BccI	CCATC	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	530
BisI	GCNGC	5 cut(s)	6, 9, 111, 408, 426
BlsI	GCNGC	5 cut(s)	7, 10, 112, 409, 427
BmiI	GGNNCC	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 146
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	2 cut(s)	182, 196
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	76, 146
BseMI	GCAATG	2 cut(s)	182, 196
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	4 cut(s)	20, 122, 419, 437
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	101, 120, 348
BsiHKAI	GWGCWC	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	76, 146
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	101, 120, 348
Bsp1286I	GDGCHC	2 cut(s)	304, 497
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	52, 191
BspACI	CCGC	3 cut(s)	5, 73, 147
BspANI	GGCC	3 cut(s)	101, 120, 348
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	2 cut(s)	47, 199
BspTI	CTTAAG	1 cut(s)	530
BsrDI	GCAATG	2 cut(s)	182, 196
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	2 cut(s)	52, 191
Bst4CI	ACNGT	2 cut(s)	157, 214
BstAFI	CTTAAG	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	222, 384
BstDEI	CTNAG	2 cut(s)	90, 251
BstF5I	GGATG	1 cut(s)	401
BstHHI	GCGC	2 cut(s)	276, 382
BstKTI	GATC	2 cut(s)	55, 194
BstMBI	GATC	2 cut(s)	52, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 193
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	20, 122, 419, 437
BsuRI	GGCC	3 cut(s)	101, 120, 348
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	222, 384
CfoI	GCGC	2 cut(s)	276, 382
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	263, 433
CviAII	CATG	4 cut(s)	203, 217, 383, 450
CviQI	GTAC	2 cut(s)	263, 433
DdeI	CTNAG	2 cut(s)	90, 251
DpnI	GATC	2 cut(s)	54, 193
DpnII	GATC	2 cut(s)	52, 191
EaeI	YGGCCR	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	2 cut(s)	304, 497
Eco53kI	GAGCTC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	302
EcoT38I	GRGCYC	2 cut(s)	304, 497
FaeI	CATG	4 cut(s)	206, 220, 386, 453
FaiI	YATR	8 cut(s)	145, 204, 218, 358, 360, 384, 437, 451
FalI	AAGNNNNNCTT	1 cut(s)	513
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	4 cut(s)	202, 216, 382, 449
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	5 cut(s)	6, 9, 111, 408, 426
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	2 cut(s)	304, 497
Fsp4HI	GCNGC	5 cut(s)	6, 9, 111, 408, 426
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	2 cut(s)	275, 381
GluI	GCNGC	5 cut(s)	6, 9, 111, 408, 426
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	101, 120, 348
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	276, 382
Hin1II	CATG	4 cut(s)	206, 220, 386, 453
Hin6I	GCGC	2 cut(s)	274, 380
HinP1I	GCGC	2 cut(s)	274, 380
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	351
HpaI	GTTAAC	1 cut(s)	342
HphI	GGTGA	2 cut(s)	293, 504
Hpy166II	GTNNAC	2 cut(s)	284, 342
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	37, 331
Hpy8I	GTNNAC	2 cut(s)	284, 342
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	157, 214
HpyCH4V	TGCA	5 cut(s)	83, 110, 182, 407, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 193
HpyF3I	CTNAG	2 cut(s)	90, 251
Hsp92II	CATG	4 cut(s)	206, 220, 386, 453
HspAI	GCGC	2 cut(s)	274, 380
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	52, 191
LmnI	GCTCC	3 cut(s)	211, 299, 415
LpnPI	CCDG	7 cut(s)	61, 173, 206, 279, 330, 449, 511
Lsp1109I	GCAGC	4 cut(s)	20, 122, 419, 437
MalI	GATC	2 cut(s)	54, 193
MboI	GATC	2 cut(s)	52, 191
MhlI	GDGCHC	2 cut(s)	304, 497
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	3 cut(s)	177, 417, 507
MluNI	TGGCCA	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	68, 71, 80, 355
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	6 cut(s)	314, 341, 368, 416, 456, 531
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	11
MspCI	CTTAAG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	107, 193
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	52, 191
NlaIII	CATG	4 cut(s)	206, 220, 386, 453
NlaIV	GGNNCC	1 cut(s)	468
NsbI	TGCGCA	1 cut(s)	381
NspI	RCATGY	1 cut(s)	386
PaeI	GCATGC	1 cut(s)	386
PkrI	GCNGC	5 cut(s)	7, 10, 112, 409, 427
Psp124BI	GAGCTC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	468
PstI	CTGCAG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	264, 434
RsaNI	GTAC	2 cut(s)	263, 433
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	6 cut(s)	314, 341, 368, 416, 456, 531
SatI	GCNGC	5 cut(s)	6, 9, 111, 408, 426
Sau3AI	GATC	2 cut(s)	52, 191
SduI	GDGCHC	2 cut(s)	304, 497
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	3 cut(s)	177, 417, 507
SsiI	CCGC	3 cut(s)	5, 73, 147
SstI	GAGCTC	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	157, 214
TaqI	TCGA	3 cut(s)	26, 51, 63
TasI	AATT	3 cut(s)	177, 417, 507
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	6 cut(s)	314, 341, 368, 416, 456, 531
Tru9I	TTAA	6 cut(s)	314, 341, 368, 416, 456, 531
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	4 cut(s)	8, 110, 407, 425
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	530
XceI	RCATGY	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.