Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006936.1

Orthogroup ID

OG0007285

Physical Location & Seq

Genomic Coordinates Reverse (-)

45614 .. 48113

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006936.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcaaatattgggctgctcaccatttgggtcaacaagaagatcgtcgagcctctactcgaaatccttcgcaagggtgccgagcctaagctgttggccttctctgcagctgttggcttcaccattggattgtttccaatctgtgggacaactgtgattatttgtgggttggctattgcatctcttggatcccactgccatgcgccaactgtcatggtgattaatctcattgctacaccaatagaactgagtttaatggtaccgttcctgcgctttggtgaatacgtctctggtggacctcattttccattgacttctgatgctttgaagaaagttttaaccctccaagcttcgcatgaagtgttattaagtattgcacatgcgttgttgggatggcttgttgcagctccttttatttttgccgcagtgtatatactctctttaccattgtttaaggtgctggttcacaagtttagcacgcgtcctttaagcccaaggagatcactttcaccaacagaagtcaggcttaaggatgacgaaaaagaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2062

Protein Analysis

183

Amino Acids

19.84

Weight (kDa)

9.1

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33490 AT1G33490 AT1G33490
fragaria_vesca	FvH4_2g00310
malus_domestica	MD05G1006100.v1.1 MD10G1002100.v1.1
prunus_persica	Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1
pyrus_communis	pycom05g00130 pycom10g00190
rosa_chinensis	RchiOBHm_Chr6g0249591
rosa_laevigata	RLG00000015559
rosa_multiflora	Rmu_sc0006936.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217500
rosa_rugosa	Rorug05G0493900 Rorug05G0494000 Rorug05G0494000
rosa_samantha	Rh3BG322400 Rh6AG003700 Rh6BG006500 Rh6CG002800 Rh6DG002600
rosa_wichuraiana	Rw6G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	2 cut(s)	77, 259
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	1 cut(s)	481
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	2 cut(s)	183, 196
AcsI	RAATTY	1 cut(s)	546
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	73, 143
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	4 cut(s)	91, 110, 350, 407
AluI	AGCT	4 cut(s)	91, 110, 350, 407
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	183, 196
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	16, 107, 404
ApoI	RAATTY	1 cut(s)	546
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	66
Asp718I	GGTACC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	205, 273
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	5 cut(s)	13, 112, 229, 290, 501
AvaII	GGWCC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	77, 259
BbvI	GCAGC	3 cut(s)	3, 119, 416
BccI	CCATC	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	527
BisI	GCNGC	4 cut(s)	17, 108, 405, 423
BlsI	GCNGC	4 cut(s)	18, 109, 406, 424
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	79, 190, 261
BmsI	GCATC	2 cut(s)	188, 310
Bpu10I	CCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 143
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	398, 538
BseLI	CCNNNNNNNGG	2 cut(s)	73, 143
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	3, 119, 416
Bsh1236I	CGCG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	2 cut(s)	77, 259
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	73, 143
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	42, 188, 500
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	79, 190, 261
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	2 cut(s)	183, 196
BspT107I	GGYRCC	2 cut(s)	77, 259
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	3 cut(s)	42, 188, 500
BssT1I	CCWWGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	154, 211, 264
BstAFI	CTTAAG	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	87, 248
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	398, 538
BstFNI	CGCG	1 cut(s)	481
BstHHI	GCGC	2 cut(s)	205, 273
BstKTI	GATC	3 cut(s)	45, 191, 503
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	42, 188, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	3 cut(s)	3, 119, 416
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	398, 538
BtsI	GCAGTG	2 cut(s)	193, 432
BtsIMutI	CAGTG	2 cut(s)	193, 432
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	2 cut(s)	205, 273
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	4 cut(s)	200, 214, 356, 380
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	87, 248
DpnI	GATC	3 cut(s)	44, 190, 502
DpnII	GATC	3 cut(s)	42, 188, 500
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	4 cut(s)	203, 217, 359, 383
FaiI	YATR	6 cut(s)	201, 215, 357, 381, 432, 434
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	4 cut(s)	199, 213, 355, 379
Fnu4HI	GCNGC	4 cut(s)	17, 108, 405, 423
FokI	GGATG	2 cut(s)	405, 545
Fsp4HI	GCNGC	4 cut(s)	17, 108, 405, 423
GlaI	GCGC	2 cut(s)	204, 272
GluI	GCNGC	4 cut(s)	17, 108, 405, 423
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	205, 273
Hin1II	CATG	4 cut(s)	203, 217, 359, 383
Hin6I	GCGC	2 cut(s)	203, 271
HinP1I	GCGC	2 cut(s)	203, 271
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	348
HphI	GGTGA	5 cut(s)	13, 112, 229, 290, 501
Hpy166II	GTNNAC	3 cut(s)	34, 296, 466
Hpy188I	TCNGA	1 cut(s)	319
Hpy8I	GTNNAC	3 cut(s)	34, 296, 466
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	77, 109
HpyCH4III	ACNGT	3 cut(s)	154, 211, 264
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	107, 179, 377, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	87, 248
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	203, 217, 359, 383
HspAI	GCGC	2 cut(s)	203, 271
KpnI	GGTACC	1 cut(s)	263
Kzo9I	GATC	3 cut(s)	42, 188, 500
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	4 cut(s)	276, 281, 446, 508
Lsp1109I	GCAGC	3 cut(s)	3, 119, 416
LweI	GCATC	2 cut(s)	188, 310
MaeII	ACGT	1 cut(s)	285
MalI	GATC	3 cut(s)	44, 190, 502
MboI	GATC	3 cut(s)	42, 188, 500
MboII	GAAGA	2 cut(s)	52, 340
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	1 cut(s)	546
MluI	ACGCGT	1 cut(s)	479
MnlI	CCTC	3 cut(s)	63, 309, 353
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	7 cut(s)	222, 254, 338, 368, 453, 488, 528
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	527
MvnI	CGCG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	3 cut(s)	42, 188, 500
NlaIII	CATG	4 cut(s)	203, 217, 359, 383
NlaIV	GGNNCC	3 cut(s)	79, 190, 261
NmeAIII	GCCGAG	1 cut(s)	106
NspI	RCATGY	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	18, 109, 406, 424
PshBI	ATTAAT	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	79, 190, 261
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	7 cut(s)	222, 254, 338, 368, 453, 488, 528
SatI	GCNGC	4 cut(s)	17, 108, 405, 423
Sau3AI	GATC	3 cut(s)	42, 188, 500
Sau96I	GGNCC	1 cut(s)	296
SetI	ASST	7 cut(s)	93, 112, 288, 301, 352, 409, 459
SfaNI	GCATC	2 cut(s)	188, 310
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	1 cut(s)	423
SspI	AATATT	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	3 cut(s)	154, 211, 264
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	48, 60
TasI	AATT	1 cut(s)	546
TauI	GCSGC	1 cut(s)	425
Tru1I	TTAA	7 cut(s)	222, 254, 338, 368, 453, 488, 528
Tru9I	TTAA	7 cut(s)	222, 254, 338, 368, 453, 488, 528
TscAI	CASTG	2 cut(s)	200, 432
TseI	GCWGC	3 cut(s)	16, 107, 404
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	200, 432
Van91I	CCANNNNNTGG	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	296
VspI	ATTAAT	1 cut(s)	222
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.