Rroxscaffold_7G00217500

Uncharacterized protein conserved in bacteria (DUF2062)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007285
Physical Location & Seq
Forward (+)
67962044 .. 67965487
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217500.1

Sequence Viewer

Length: 591 bp
ATGGCAAATATCGGGTTGCTCACCATCTGGCTCAACAAGAAGATCGTCGAGCCTCTACTCGAAATCCTTCGCAGGGGTGCCGAGCCTAAGCTGTTGGCCTTCTCTGCAGCTCTTGGCTTTACCATTGGATTGTTTCCAATCTGTGGGACAACTGTGATTATCTGTGGGTTGGCTATTGCATCTCTTGGATCCCACTGCCATGCGCCAACTGTCATGGTGATTAATCTCATTGCTACACCAATTGAACTGAGTTTAATGGTACCATTCCTGCGCTTTGGTGAATACGTCTCTGGTGGACCTCATTTTCCATTGACTTCTGATGCTTTGAAGAAAGTTTTAACCCTCCAAGCTTCACATGAAGTCTTATTAAGTATTGCACATGCGTTGTTGGGATGGCTTGTTGCGGCTCCTTTTATTTTTGCCGCGGTGTATATACTCTCTTCACCATTGTTTAAGGTGTTGGTTCACAAGTTTAGCACACGTCCTTTAAGCCCAAAGAGATCACTTTCACCAACAGAAGTCAGGCTTAAGAGCTGCTTGCAAGAGGGAAGGCAAGAGACAATGGAGGAGTTGGAAGAGCTTCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2062

Protein Analysis

196

Amino Acids

21.35

Weight (kDa)

8.39

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2062 PF09835 19 - 157 8.9e-07 Uncharacterized protein conserved in bacteria (DUF2062)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 77, 259
AccB7I CCANNNNNTGG 1 cut(s) 143
AccII CGCG 1 cut(s) 425
AciI CCGC 3 cut(s) 404, 423, 425
AclWI GGATC 2 cut(s) 183, 196
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 73, 143
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 2 cut(s) 245, 328
AjiI CACGTC 1 cut(s) 482
AluBI AGCT 5 cut(s) 91, 110, 350, 534, 580
AluI AGCT 5 cut(s) 91, 110, 350, 534, 580
Alw26I GTCTC 2 cut(s) 292, 551
AlwI GGATC 2 cut(s) 183, 196
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 107, 534
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 2 cut(s) 66, 579
Asp718I GGTACC 1 cut(s) 259
AspLEI GCGC 2 cut(s) 205, 273
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 5 cut(s) 13, 229, 290, 435, 501
AvaII GGWCC 1 cut(s) 296
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 2 cut(s) 77, 259
BbvI GCAGC 2 cut(s) 119, 521
BccI CCATC 2 cut(s) 32, 387
BcoDI GTCTC 2 cut(s) 292, 551
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 4 cut(s) 108, 405, 423, 535
BlsI GCNGC 4 cut(s) 109, 406, 424, 536
Bme18I GGWCC 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 4 cut(s) 79, 190, 261, 408
BmsI GCATC 2 cut(s) 188, 310
Bpu10I CCTNAGC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 143
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 2 cut(s) 73, 143
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 119, 521
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 2 cut(s) 77, 259
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 73, 143
BsmAI GTCTC 2 cut(s) 292, 551
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 3 cut(s) 42, 188, 500
BspACI CCGC 3 cut(s) 404, 423, 425
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 4 cut(s) 79, 190, 261, 408
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 183, 196
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 2 cut(s) 77, 259
BspTI CTTAAG 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 3 cut(s) 42, 188, 500
Bst4CI ACNGT 2 cut(s) 154, 211
Bst6I CTCTTC 2 cut(s) 445, 570
BstAFI CTTAAG 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 87, 248
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 2 cut(s) 205, 273
BstKTI GATC 3 cut(s) 45, 191, 503
BstMAI GTCTC 2 cut(s) 292, 551
BstMBI GATC 3 cut(s) 42, 188, 500
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 119, 521
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 423
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 539
CfoI GCGC 2 cut(s) 205, 273
Cfr13I GGNCC 1 cut(s) 296
Cfr42I CCGCGG 1 cut(s) 426
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 200, 214, 356, 380
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 87, 248
DpnI GATC 3 cut(s) 44, 190, 502
DpnII GATC 3 cut(s) 42, 188, 500
Eam1104I CTCTTC 2 cut(s) 445, 570
EarI CTCTTC 2 cut(s) 445, 570
Eco47I GGWCC 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 4 cut(s) 203, 217, 359, 383
FaiI YATR 7 cut(s) 201, 215, 357, 381, 432, 434, 589
FalI AAGNNNNNCTT 4 cut(s) 510, 542, 521, 553
FaqI GGGAC 1 cut(s) 160
FatI CATG 4 cut(s) 199, 213, 355, 379
Fnu4HI GCNGC 4 cut(s) 108, 405, 423, 535
FokI GGATG 1 cut(s) 405
Fsp4HI GCNGC 4 cut(s) 108, 405, 423, 535
GlaI GCGC 2 cut(s) 204, 272
GluI GCNGC 4 cut(s) 108, 405, 423, 535
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 2 cut(s) 205, 273
Hin1II CATG 4 cut(s) 203, 217, 359, 383
Hin6I GCGC 2 cut(s) 203, 271
HinP1I GCGC 2 cut(s) 203, 271
HindIII AAGCTT 1 cut(s) 348
HphI GGTGA 5 cut(s) 13, 229, 290, 435, 501
Hpy166II GTNNAC 2 cut(s) 296, 466
Hpy188I TCNGA 1 cut(s) 319
Hpy8I GTNNAC 2 cut(s) 296, 466
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 77, 109, 543
HpyCH4III ACNGT 2 cut(s) 154, 211
HpyCH4IV ACGT 2 cut(s) 285, 481
HpyCH4V TGCA 4 cut(s) 107, 179, 377, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 87, 248
HpySE526I ACGT 2 cut(s) 285, 481
Hsp92II CATG 4 cut(s) 203, 217, 359, 383
HspAI GCGC 2 cut(s) 203, 271
KpnI GGTACC 1 cut(s) 263
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 3 cut(s) 42, 188, 500
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 5 cut(s) 13, 58, 276, 281, 508
Lsp1109I GCAGC 2 cut(s) 119, 521
LweI GCATC 2 cut(s) 188, 310
MaeII ACGT 2 cut(s) 285, 481
MalI GATC 3 cut(s) 44, 190, 502
MboI GATC 3 cut(s) 42, 188, 500
MboII GAAGA 4 cut(s) 52, 340, 432, 587
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 188
MluCI AATT 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 5 cut(s) 63, 309, 353, 538, 559
MroXI GAANNNNTTC 2 cut(s) 66, 579
MseI TTAA 7 cut(s) 222, 254, 338, 368, 453, 488, 528
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 527
MunI CAATTG 1 cut(s) 240
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 3 cut(s) 42, 188, 500
NlaIII CATG 4 cut(s) 203, 217, 359, 383
NlaIV GGNNCC 4 cut(s) 79, 190, 261, 408
NmeAIII GCCGAG 1 cut(s) 106
NspI RCATGY 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 570
PdmI GAANNNNTTC 2 cut(s) 66, 579
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 4 cut(s) 109, 406, 424, 536
PshBI ATTAAT 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 79, 190, 261, 408
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 198
SacII CCGCGG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 7 cut(s) 222, 254, 338, 368, 453, 488, 528
SatI GCNGC 4 cut(s) 108, 405, 423, 535
Sau3AI GATC 3 cut(s) 42, 188, 500
Sau96I GGNCC 1 cut(s) 296
SetI ASST 9 cut(s) 93, 112, 288, 301, 352, 459, 484, 536, 582
SfaNI GCATC 2 cut(s) 188, 310
SfcI CTRYAG 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 426
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 1 cut(s) 240
SsiI CCGC 3 cut(s) 404, 423, 425
TaaI ACNGT 2 cut(s) 154, 211
TaiI ACGT 2 cut(s) 288, 484
TaqI TCGA 2 cut(s) 48, 60
TasI AATT 1 cut(s) 240
TauI GCSGC 2 cut(s) 407, 425
Tru1I TTAA 7 cut(s) 222, 254, 338, 368, 453, 488, 528
Tru9I TTAA 7 cut(s) 222, 254, 338, 368, 453, 488, 528
TscAI CASTG 1 cut(s) 200
TseI GCWGC 2 cut(s) 107, 534
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 222
XceI RCATGY 1 cut(s) 383
XmnI GAANNNNTTC 2 cut(s) 66, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.