Prupe.8G003400_v2.0.a1

Uncharacterized protein conserved in bacteria (DUF2062)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
287841 .. 290920
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G003400.1

Sequence Viewer

Length: 552 bp
ATGGCTTGTAACGGGTTGTCCATTTGGTTCAAAAAGAAGATCGTTGATCCTCTCCTCGAAATCCTCCGCAGGGGTGCAGAACCTAAGCTGTTGGCCTTCTCTGCAGCTCTTGGCATTACCTTGGGGGTATTCCCAATATGTGGGACAACTGTGATTCTGTGTGGGATGGCTATTGCATCGCTGGGGTCGCATTGCCATGCTCCAACTGTGATGCTGACTAATGTCCTTGCTACACCAATAGAACTGAGTTTAATTGTACCTTTCTTGCGCTTTGGTGAAATTATTTCTGGTGGAGCTCATTTTCCTTTAACTTCTGATGCTTTCAAGAAAGTTTTAACTGGCCAAGCTTCACGTGAGGTCTTGTTAAGTATTGCGCATGCGTTGTTAGGATGGCTCGTTGCTGCTCCTTTAATTTTTGCCGCACTGTACATACTCTTTCTACCATGTTTTAAGGTGTTGGTTCCCAAGTTCAGCACTGTTCCTTCAAGCCCAAAGAAAGCACTTTCACCCACAGAAGTCAGGCTTAAGTGTTGCTTGCAAGGAGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

19.4

Weight (kDa)

9.34

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 140
AciI CCGC 2 cut(s) 67, 420
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 340
AcvI CACGTG 1 cut(s) 353
AfaI GTAC 2 cut(s) 258, 428
AfiI CCNNNNNNNGG 2 cut(s) 70, 140
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 3 cut(s) 31, 325, 486
AluBI AGCT 4 cut(s) 88, 107, 296, 347
AluI AGCT 4 cut(s) 88, 107, 296, 347
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 1 cut(s) 41
AoxI GGCC 2 cut(s) 93, 340
ApeKI GCWGC 2 cut(s) 104, 401
AspLEI GCGC 2 cut(s) 270, 376
AsuHPI GGTGA 2 cut(s) 287, 498
BalI TGGCCA 1 cut(s) 342
BanII GRGCYC 1 cut(s) 298
BbrPI CACGTG 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 116, 388
BccI CCATC 2 cut(s) 160, 384
BfmI CTRYAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 524
BisI GCNGC 3 cut(s) 105, 402, 420
BlsI GCNGC 3 cut(s) 106, 403, 421
BmiI GGNNCC 1 cut(s) 462
BmsI GCATC 3 cut(s) 185, 201, 307
BoxI GACNNNNGTC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 140
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 171, 395
BseLI CCNNNNNNNGG 2 cut(s) 70, 140
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 116, 388
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 2 cut(s) 95, 342
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 70, 140
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 2 cut(s) 95, 342
Bsp1286I GDGCHC 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 39, 46
BspACI CCGC 2 cut(s) 67, 420
BspANI GGCC 2 cut(s) 95, 342
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 39, 46
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 151, 208, 426, 478
BstAFI CTTAAG 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 378, 536
BstDEI CTNAG 2 cut(s) 84, 245
BstF5I GGATG 2 cut(s) 171, 395
BstHHI GCGC 2 cut(s) 270, 376
BstKTI GATC 2 cut(s) 42, 49
BstMBI GATC 2 cut(s) 39, 46
BstMWI GCNNNNNNNGC 2 cut(s) 101, 187
BstNSI RCATGY 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 116, 388
BsuRI GGCC 2 cut(s) 95, 342
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 171, 395
BtsIMutI CAGTG 2 cut(s) 422, 474
Cac8I GCNNGC 2 cut(s) 378, 536
CfoI GCGC 2 cut(s) 270, 376
Csp6I GTAC 2 cut(s) 257, 427
CviAII CATG 3 cut(s) 197, 377, 444
CviQI GTAC 2 cut(s) 257, 427
DdeI CTNAG 2 cut(s) 84, 245
DpnI GATC 2 cut(s) 41, 48
DpnII GATC 2 cut(s) 39, 46
EaeI YGGCCR 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 296
Eco72I CACGTG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 200, 380, 447
FaiI YATR 5 cut(s) 139, 198, 378, 431, 445
FalI AAGNNNNNCTT 4 cut(s) 507, 539, 518, 550
FaqI GGGAC 1 cut(s) 157
FatI CATG 3 cut(s) 196, 376, 443
Fnu4HI GCNGC 3 cut(s) 105, 402, 420
FokI GGATG 2 cut(s) 178, 402
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 105, 402, 420
FspI TGCGCA 1 cut(s) 375
GlaI GCGC 2 cut(s) 269, 375
GluI GCNGC 3 cut(s) 105, 402, 420
GsaI CCCAGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 95, 342
HhaI GCGC 2 cut(s) 270, 376
Hin1II CATG 3 cut(s) 200, 380, 447
Hin6I GCGC 2 cut(s) 268, 374
HinP1I GCGC 2 cut(s) 268, 374
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 1 cut(s) 154
HphI GGTGA 2 cut(s) 287, 498
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 106, 492
HpyCH4III ACNGT 4 cut(s) 151, 208, 426, 478
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 4 cut(s) 77, 104, 176, 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 187
HpyF3I CTNAG 2 cut(s) 84, 245
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 3 cut(s) 200, 380, 447
HspAI GCGC 2 cut(s) 268, 374
Kzo9I GATC 2 cut(s) 39, 46
LmnI GCTCC 3 cut(s) 205, 293, 409
LpnPI CCDG 5 cut(s) 55, 167, 273, 324, 505
Lsp1109I GCAGC 2 cut(s) 116, 388
LweI GCATC 3 cut(s) 185, 201, 307
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 41, 48
MboI GATC 2 cut(s) 39, 46
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 3 cut(s) 252, 279, 411
MluNI TGGCCA 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 6 cut(s) 60, 65, 74, 349, 536, 539
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 7 cut(s) 251, 308, 335, 365, 410, 450, 525
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 101, 187
NdeII GATC 2 cut(s) 39, 46
NlaIII CATG 3 cut(s) 200, 380, 447
NlaIV GGNNCC 1 cut(s) 462
NsbI TGCGCA 1 cut(s) 375
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 3 cut(s) 106, 403, 421
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 353
PshAI GACNNNNGTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 298
PspCI CACGTG 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 106
RsaI GTAC 2 cut(s) 258, 428
RsaNI GTAC 2 cut(s) 257, 427
RseI CAYNNNNRTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 7 cut(s) 251, 308, 335, 365, 410, 450, 525
SatI GCNGC 3 cut(s) 105, 402, 420
Sau3AI GATC 2 cut(s) 39, 46
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 3 cut(s) 185, 201, 307
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SphI GCATGC 1 cut(s) 380
Sse9I AATT 3 cut(s) 252, 279, 411
SsiI CCGC 2 cut(s) 67, 420
SstI GAGCTC 1 cut(s) 298
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 4 cut(s) 151, 208, 426, 478
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 57
TasI AATT 3 cut(s) 252, 279, 411
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 7 cut(s) 251, 308, 335, 365, 410, 450, 525
Tru9I TTAA 7 cut(s) 251, 308, 335, 365, 410, 450, 525
TscAI CASTG 2 cut(s) 429, 481
TseI GCWGC 2 cut(s) 104, 401
TspRI CASTG 2 cut(s) 429, 481
Van91I CCANNNNNTGG 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 524
XceI RCATGY 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.