Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007285

Physical Location & Seq

Genomic Coordinates Forward (+)

33248815 .. 33252335

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAAATATTGGGCTGCTCACCATTTGGCTCAACAAGAAGATCGTCGAGCCTCTACTCGAAGTCCTTCGCAAGGGTGCCGAGCCTAAGCTGTTGGCTTTCTCTGCAGCTCTTGGCTTCACCATTGGATTGTTTCCAATCTGTGGGACAACTGTGATTATCTGTGGGTTGGCTATTGCATCTCTTGGATCCCACTGCCATGCGCCAACTGTCATGGTGATTAATCTCATTGCTACACCAATTGAACTGAGTTTAATGGTACCGTTCCTGCGCTTTGGTGAATACGTCTTTGGTGGACCTCATTTTCCATTGACTTCTGATGCTTTGAAGAAAGTTTTAACCCTCCAAGCTTCGCATGAAGTCTTATTAAGTATTGCACATGCGGTAGGTCGCCAACTTAACATCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2062

Protein Analysis

136

Amino Acids

14.61

Weight (kDa)

7.79

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33490 AT1G33490 AT1G33490
fragaria_vesca	FvH4_2g00310
malus_domestica	MD05G1006100.v1.1 MD10G1002100.v1.1
prunus_persica	Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1 Prupe.8G003400_v2.0.a1
pyrus_communis	pycom05g00130 pycom10g00190
rosa_chinensis	RchiOBHm_Chr6g0249591
rosa_laevigata	RLG00000015559
rosa_multiflora	Rmu_sc0006936.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217500
rosa_rugosa	Rorug05G0493900 Rorug05G0494000 Rorug05G0494000
rosa_samantha	Rh3BG322400 Rh6AG003700 Rh6BG006500 Rh6CG002800 Rh6DG002600
rosa_wichuraiana	Rw6G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	2 cut(s)	77, 259
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	2 cut(s)	183, 196
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	73, 143
AgsI	TTSAA	2 cut(s)	245, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	3 cut(s)	91, 110, 350
AluI	AGCT	3 cut(s)	91, 110, 350
AlwI	GGATC	2 cut(s)	183, 196
ApeKI	GCWGC	2 cut(s)	16, 107
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	66
Asp718I	GGTACC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	205, 273
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	13, 112, 229, 290
AvaII	GGWCC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	77, 259
BbvI	GCAGC	2 cut(s)	3, 119
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	17, 108
BlsI	GCNGC	2 cut(s)	18, 109
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	79, 190, 261
BmsI	GCATC	2 cut(s)	188, 310
Bpu10I	CCTNAGC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 143
Bse3DI	GCAATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	73, 143
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	3, 119
BshNI	GGYRCC	2 cut(s)	77, 259
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	73, 143
BsmFI	GGGAC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	42, 188
BspACI	CCGC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	79, 190, 261
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	2 cut(s)	183, 196
BspT107I	GGYRCC	2 cut(s)	77, 259
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	2 cut(s)	42, 188
Bst4CI	ACNGT	3 cut(s)	154, 211, 264
BstDEI	CTNAG	2 cut(s)	87, 248
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	205, 273
BstKTI	GATC	2 cut(s)	45, 191
BstMBI	GATC	2 cut(s)	42, 188
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	3, 119
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
CfoI	GCGC	2 cut(s)	205, 273
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	4 cut(s)	200, 214, 356, 380
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	87, 248
DpnI	GATC	2 cut(s)	44, 190
DpnII	GATC	2 cut(s)	42, 188
Eco47I	GGWCC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	71
FaeI	CATG	4 cut(s)	203, 217, 359, 383
FaiI	YATR	4 cut(s)	201, 215, 357, 381
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	4 cut(s)	199, 213, 355, 379
Fnu4HI	GCNGC	2 cut(s)	17, 108
Fsp4HI	GCNGC	2 cut(s)	17, 108
GlaI	GCGC	2 cut(s)	204, 272
GluI	GCNGC	2 cut(s)	17, 108
HhaI	GCGC	2 cut(s)	205, 273
Hin1II	CATG	4 cut(s)	203, 217, 359, 383
Hin6I	GCGC	2 cut(s)	203, 271
HinP1I	GCGC	2 cut(s)	203, 271
HindIII	AAGCTT	1 cut(s)	348
HphI	GGTGA	4 cut(s)	13, 112, 229, 290
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	154, 211, 264
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	107, 179, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	87, 248
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	203, 217, 359, 383
HspAI	GCGC	2 cut(s)	203, 271
KpnI	GGTACC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	42, 188
LpnPI	CCDG	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	3, 119
LweI	GCATC	2 cut(s)	188, 310
MaeII	ACGT	1 cut(s)	285
MalI	GATC	2 cut(s)	44, 190
MboI	GATC	2 cut(s)	42, 188
MboII	GAAGA	2 cut(s)	52, 340
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	1 cut(s)	240
MnlI	CCTC	3 cut(s)	63, 309, 353
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	5 cut(s)	222, 254, 338, 368, 399
MslI	CAYNNNNRTG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	2 cut(s)	42, 188
NlaIII	CATG	4 cut(s)	203, 217, 359, 383
NlaIV	GGNNCC	3 cut(s)	79, 190, 261
NmeAIII	GCCGAG	1 cut(s)	106
NspI	RCATGY	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	18, 109
PshBI	ATTAAT	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	79, 190, 261
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	5 cut(s)	222, 254, 338, 368, 399
SatI	GCNGC	2 cut(s)	17, 108
Sau3AI	GATC	2 cut(s)	42, 188
Sau96I	GGNCC	1 cut(s)	296
SetI	ASST	6 cut(s)	93, 112, 288, 301, 352, 391
SfaNI	GCATC	2 cut(s)	188, 310
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	383
SspI	AATATT	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	154, 211, 264
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	48, 60
TasI	AATT	1 cut(s)	240
Tru1I	TTAA	5 cut(s)	222, 254, 338, 368, 399
Tru9I	TTAA	5 cut(s)	222, 254, 338, 368, 399
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	2 cut(s)	16, 107
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	296
VspI	ATTAAT	1 cut(s)	222
XagI	CCTNNNNNAGG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.