Rh6DG002600

Uncharacterized protein conserved in bacteria (DUF2062)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007285
Physical Location & Seq
Reverse (-)
385296 .. 387827
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG002600.1

Sequence Viewer

Length: 552 bp
ATGGCAAATATCGGGTTGCTCACCATCTGGCTCAACAAGAAGATCGTCGAGCCTCTACTCGAAATCCTTCGCAAGGGTGCCGAGCCTAAGCTGTTGGCCTTCTCTGCAGCTCTTGGCTTCACCATTGGATTGTTTCCAATCTGTGGGTCAACTGTGATTATCTGTGGGTTGGCTATTGCATCTCTTGGATCCCACTGCCATGCCCCAACTGTCATGGTGATTAATCTCATTGCTACACCAATTGAACTGAGTTTAATGGTACCGTTCCTGCGCTTTGGTGAATACGTCTCTGGTGGACCTCATTTTCCACTGACATCTGATGCTTTGAAGAAAGTTTTAACCCTCCAAGCTTCGCATGAAGTCTTATTAAGTATTGCACATGCGTTGTTGGGATGGCTTGTTGCGGCTCCTTTTATTTTTGCCGCAGTGTATATACTCTCTTTACCATTGTTTAAGGTGTTGGTTCACAAGTTTAGCACACGTCCTTTGAGCCCAAGGAGATCACTGTCACCAACAGAAGTCAGGCTTAAGGATGACGAAAAAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2062

Protein Analysis

183

Amino Acids

19.86

Weight (kDa)

9.1

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2062 PF09835 19 - 157 6e-07 Uncharacterized protein conserved in bacteria (DUF2062)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 77, 259
AccB7I CCANNNNNTGG 1 cut(s) 143
AciI CCGC 2 cut(s) 404, 423
AclWI GGATC 2 cut(s) 183, 196
AcsI RAATTY 1 cut(s) 546
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 73, 143
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 2 cut(s) 245, 328
AjiI CACGTC 1 cut(s) 482
AluBI AGCT 3 cut(s) 91, 110, 350
AluI AGCT 3 cut(s) 91, 110, 350
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 183, 196
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 546
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 66
Asp718I GGTACC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 5 cut(s) 13, 112, 229, 290, 501
AvaII GGWCC 1 cut(s) 296
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 2 cut(s) 77, 259
BanII GRGCYC 1 cut(s) 494
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 32, 387
BcoDI GTCTC 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 3 cut(s) 108, 405, 423
BlsI GCNGC 3 cut(s) 109, 406, 424
Bme18I GGWCC 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 4 cut(s) 79, 190, 261, 408
BmsI GCATC 2 cut(s) 188, 310
Bpu10I CCTNAGC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 494
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 143
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 2 cut(s) 398, 538
BseLI CCNNNNNNNGG 2 cut(s) 73, 143
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 2 cut(s) 77, 259
BslI CCNNNNNNNGG 2 cut(s) 73, 143
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 3 cut(s) 42, 188, 500
BspACI CCGC 2 cut(s) 404, 423
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 240
BspLI GGNNCC 4 cut(s) 79, 190, 261, 408
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 183, 196
BspT107I GGYRCC 2 cut(s) 77, 259
BspTI CTTAAG 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 3 cut(s) 42, 188, 500
BssT1I CCWWGG 1 cut(s) 494
Bst4CI ACNGT 4 cut(s) 154, 211, 264, 507
BstAFI CTTAAG 1 cut(s) 527
BstDEI CTNAG 2 cut(s) 87, 248
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 398, 538
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 3 cut(s) 45, 191, 503
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 42, 188, 500
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 98
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 398, 538
BtsI GCAGTG 2 cut(s) 193, 432
BtsIMutI CAGTG 4 cut(s) 193, 308, 432, 503
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 200, 214, 356, 380
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 87, 248
DpnI GATC 3 cut(s) 44, 190, 502
DpnII GATC 3 cut(s) 42, 188, 500
Eco130I CCWWGG 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 296
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 4 cut(s) 203, 217, 359, 383
FaiI YATR 6 cut(s) 201, 215, 357, 381, 432, 434
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 4 cut(s) 199, 213, 355, 379
Fnu4HI GCNGC 3 cut(s) 108, 405, 423
FokI GGATG 2 cut(s) 405, 545
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 108, 405, 423
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 108, 405, 423
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 1 cut(s) 273
Hin1II CATG 4 cut(s) 203, 217, 359, 383
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 348
HphI GGTGA 5 cut(s) 13, 112, 229, 290, 501
Hpy166II GTNNAC 3 cut(s) 150, 296, 466
Hpy188I TCNGA 1 cut(s) 319
Hpy8I GTNNAC 3 cut(s) 150, 296, 466
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 77, 109
HpyCH4III ACNGT 4 cut(s) 154, 211, 264, 507
HpyCH4IV ACGT 2 cut(s) 285, 481
HpyCH4V TGCA 3 cut(s) 107, 179, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 87, 248
HpySE526I ACGT 2 cut(s) 285, 481
Hsp92II CATG 4 cut(s) 203, 217, 359, 383
HspAI GCGC 1 cut(s) 271
KpnI GGTACC 1 cut(s) 263
Kzo9I GATC 3 cut(s) 42, 188, 500
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 4 cut(s) 13, 276, 281, 508
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 188, 310
MaeII ACGT 2 cut(s) 285, 481
MaeIII GTNAC 1 cut(s) 507
MalI GATC 3 cut(s) 44, 190, 502
MboI GATC 3 cut(s) 42, 188, 500
MboII GAAGA 2 cut(s) 52, 340
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 494
MluCI AATT 2 cut(s) 240, 546
MnlI CCTC 3 cut(s) 63, 309, 353
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 6 cut(s) 222, 254, 338, 368, 453, 528
MslI CAYNNNNRTG 1 cut(s) 198
MspCI CTTAAG 1 cut(s) 527
MunI CAATTG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 3 cut(s) 42, 188, 500
NlaIII CATG 4 cut(s) 203, 217, 359, 383
NlaIV GGNNCC 4 cut(s) 79, 190, 261, 408
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 507
NspI RCATGY 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 3 cut(s) 109, 406, 424
PshBI ATTAAT 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 79, 190, 261, 408
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 6 cut(s) 222, 254, 338, 368, 453, 528
SatI GCNGC 3 cut(s) 108, 405, 423
Sau3AI GATC 3 cut(s) 42, 188, 500
Sau96I GGNCC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 494
SetI ASST 7 cut(s) 93, 112, 288, 301, 352, 459, 484
SfaNI GCATC 2 cut(s) 188, 310
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 2 cut(s) 240, 546
SsiI CCGC 2 cut(s) 404, 423
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 4 cut(s) 154, 211, 264, 507
TaiI ACGT 2 cut(s) 288, 484
TaqI TCGA 2 cut(s) 48, 60
TasI AATT 2 cut(s) 240, 546
TauI GCSGC 2 cut(s) 407, 425
Tru1I TTAA 6 cut(s) 222, 254, 338, 368, 453, 528
Tru9I TTAA 6 cut(s) 222, 254, 338, 368, 453, 528
TscAI CASTG 4 cut(s) 200, 315, 432, 510
TseFI GTSAC 1 cut(s) 507
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 4 cut(s) 200, 315, 432, 510
Van91I CCANNNNNTGG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 546
XceI RCATGY 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.