FvH4_2g00672

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016250
Physical Location & Seq
Forward (+)
731459 .. 738818
7360 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00672.t1

Sequence Viewer

Length: 2748 bp
ATGGAACAATCTTACATGCAATTGTCACAAAATTTTTATGAAGCCATGAAAGCTTGTGCATCTCTAAGGTCGATACCCATTGCCAGAAAACTCCATGGCCAACTCATTTCTGTAGGATTGGACTCTGCCATTTTCCTCCAGAACCATCTCTTGCACATGTACTCCCGTTGCAGTTTGATAGATGATGCTCGCCGAATTTTCTTTAGTATTCAACGTCCTAATGTGTTTAGTTGGAATACAATGATTAGCGCGTTGGTAGACTTGGGTCACATGGGGGAGGCAGAGACTTTGTTCAATAAAATGCCTGAGAGAGATACCGTCTCCTGGACGACAATGATGTCTGGCTATTTTCATAATGGGCAACCTGAGGATGCAATTAAAGTGTTTGCTTCAATGGTATGGAATCGTGACAGTTTCTATGACCCATTTTCCTTCTCTTGTGTAATGAAGGCTTGTGGTAGCCTTGGTCACATTAAGTTGGCCCTTCAGTTGCATAGTCTACTGGAGAAATTATATTTTGGAGGCAATATGGTTATTCATAATTCGGTAATTGATATGTACATCAAGTGTGGTGCACTTCGATTGGCTGAGAAGCTATTTATGAGGATCCCTAATCCTAGTTTGTTTTGTTGGAACAGTATGATCTATGGTTGCTCAAAACTTTATGGGGTCAGAAGGGCTCTCCATATGTTCATTGAAATGCCTGAACGTGATTGTGTGTCTTGGAATACCATAATATCAATCTTTTCTCAACATGGTTTTGGGGTTGAGAGTCTCAGTATGTTTGTTGAGATGTGGAATCATGGTTTTAGACCAAATGCTATGATATATGCCACTGTACTCAGTGCATGTGCACGTATACATGATCTTGAATGGGGTTGTCATTTGCATGCTAGGATACTCCGTATGGAACCAAGTATGGATATTTTCATGGGTAGCGGGCTGGTTGATATGTATGTGAAATGTGGACAGTTGCATCTTGCAAGGCAGGTGTTTGACAATATGACAGAACACAATGCAGTTTCTTGGACTTCTATGATCAGTGGAGTCATGCATTTTGGGCTCAAAGATGAAGCTTTAGTACTGTTTAATCGAATGAGAAAGGCTCCTGTCGTCTTGGATGAGTTTACTCTTGCGACAGTTCTTGGGGTTTGTTCAGGCCATGAACATGCTTGCGTTGGGGAGCAGCTCCATGGATATACAATCAAGGGTGGAATGATCTCCTCTATTCCTGTAGGGAATGCCCTTGTTACAATGTATGCAAAATGTGGAAATACTGATAAAGCCAACCAAACATTTGAGTTGATGCCTGCTAAAGATATAATATCATGGACATCCATGATCACAGCACTCTCTCAAACTGGTAATGTTGAAAAATCCCGAGAATATTTTGATAAAATGCCAGAGCGAAATGTCATAAGTTGGAACTCAATGTTGGGAACATATTTCCAAAATGGTTTATGGGAAGAAGGCCTAAAATTGTATACTTTAATGCGAAGGGTGGGGGTTAACCCGGATTGGATCACACTAGTAACTTCAATCAGTTCCTGTGCTGATTTAGCAATATTGAAACTTGGGGTGCAGATTATAGCTCAAGCTGAAAAATTAGGATTTGGTTCTAATGTTTCAGTCATGAATAGCATTATTACTATGTATTCAAGATGTGGACGAGTTATAGAAGCAAAAGGAGTTTTTGATTCAATATGTGATAAAAATTTGGTCTCTTGGAATGCACTTATGGCAGGATATGCTCAAAATGGACAAGGTAGGAAGGTGATCGAGGTTTTTGAGCATATGTTGAAAATGGACTGCCCACCTGATCATATAAGCTATGTATCTGTTCTATCAGGTTGTGGCCATTCAGGGCTTGTAACAGAGGGGAAACACTACTTCAGTTCTATGACCGAAGATTTTGGCATCAATCCTACATGTGAACATTTTGCCTGTATGGTAGATCTACTTGGTCGAGCTGGGTTACTAACGGAGGCCAGGAATTTGATTGACGCAATGCCGTTTAAGCCAAATGCTGCTATCTGGGGGGCTCTTCTTGGTGCTTGCCGGCTTCATCGCAATTATAATCTAGCAGAATTTGCAGCGAGAAATTTACTTGAATTAGATTTGGATGATTCTGGCAGTTATGTCCTTCTAGCTAATACATATTCAGATTGTGGACAACTAGAAGCTTTTGCAGATGTAAGAAAACAGATGAGAAAGAAAGGAATAGAGAAAAATCCTGGCTGTAGCTGGATAGAGGTTAATAATAGGGTACATGTGTTTACCGTAGATGACACTAATCATCCACAAATCAAGGATGTTTATAGAATACTGGAGGAGATAGTCAAGAAGATAGAAGATACAGGATGCTATGTCAGTTCAAGTACTGAAGTTCGTTCTCAGCTCCATCATAGTGAGAAGCTTGCTATTGCTTTTGGGCTGCTTAGCTTGCCTGCGTGGATGCCGATAAATTGCGGGATGGACACCGGTTTCATCATTTCAAGGATGGATGTTGCTCCTGTGGAGACTACTGGTGATCTCGGGATTTACAACTGGAGAACTCTGATAAAGTCAAAAACGTGGGATTCGAGGGAAATCATAGCCATCTGCCGTTTCTTGCTCCGGCGACATGGTGATGGCCATCGTGAAGCAGCAAAAGCCGGATCTAAGAAAAAGGTGCTGCCCACCCTTTTTACAATATTGACCGACTGCAGAGTATGCAAGGATCACCATCATGATGCACGCCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

916

Amino Acids

102.95

Weight (kDa)

7.05

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 73 - 104 9e-07 PPR repeat family
PPR PF01535 76 - 104 3.2e-06 PPR repeat
PPR_2 PF13041 104 - 152 1.2e-07 PPR repeat family
PPR PF01535 107 - 134 9e-07 PPR repeat
PPR_2 PF13041 339 - 384 3.7e-06 PPR repeat family
PPR PF01535 442 - 472 3e-06 PPR repeat
PPR_2 PF13041 470 - 518 5.8e-09 PPR repeat family
PPR_2 PF13041 572 - 619 8.2e-12 PPR repeat family
PPR PF01535 574 - 604 8.4e-07 PPR repeat
E_motif PF20431 689 - 751 1.6e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00672 FvH4_3g26580
malus_domestica MD03G1153100.v1.1
prunus_persica Prupe.6G140100_v2.0.a1
pyrus_communis pycom03g10670
rosa_chinensis RchiOBHm_Chr5g0048221
rosa_laevigata RLG00000034503
rosa_multiflora Rmu_sc0001408.1_g000005
rosa_roxburghii Rroxscaffold_1G00033660
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316300 Rh5BG327000 Rh5CG353200 Rh5DG338100
rosa_wichuraiana Rw5G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2076
AarI CACCTGC 1 cut(s) 979
AasI GACNNNNNNGTC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 979
AccI GTMKAC 4 cut(s) 258, 499, 859, 1484
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 939, 2469
AclWI GGATC 5 cut(s) 601, 614, 1529, 2665, 2727
AcoI YGGCCR 3 cut(s) 97, 1855, 2632
AcsI RAATTY 6 cut(s) 31, 195, 1714, 1993, 2087, 2101
AcuI CTGAAG 3 cut(s) 470, 1876, 2403
AfaI GTAC 6 cut(s) 161, 560, 840, 1083, 2268, 2380
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 3 cut(s) 156, 1928, 2269
AgeI ACCGGT 1 cut(s) 2480
AhlI ACTAGT 1 cut(s) 1528
AjnI CCWGG 3 cut(s) 323, 1988, 2233
AjuI GAANNNNNNNTTGG 2 cut(s) 1418, 1450
Alw21I GWGCWC 2 cut(s) 577, 856
Alw26I GTCTC 5 cut(s) 278, 325, 779, 1726, 2513
Alw44I GTGCAC 2 cut(s) 573, 852
AlwI GGATC 5 cut(s) 601, 614, 1529, 2665, 2727
AlwNI CAGNNNCTG 1 cut(s) 1548
Ama87I CYCGRG 2 cut(s) 1380, 2534
AoxI GGCC 7 cut(s) 97, 480, 1159, 1471, 1855, 1986, 2632
ApaLI GTGCAC 2 cut(s) 573, 852
ApeKI GCWGC 6 cut(s) 1186, 2027, 2093, 2434, 2645, 2674
ApoI RAATTY 6 cut(s) 31, 195, 1714, 1993, 2087, 2101
AsiGI ACCGGT 1 cut(s) 2480
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 1514
AsuHPI GGTGA 4 cut(s) 1786, 2540, 2639, 2714
AvaI CYCGRG 2 cut(s) 1380, 2534
AxyI CCTNAGG 1 cut(s) 366
BaeGI GKGCMC 2 cut(s) 577, 856
BaeI ACNNNNGTAYC 2 cut(s) 2258, 2291
BalI TGGCCA 3 cut(s) 99, 1857, 2634
BamHI GGATCC 1 cut(s) 606
BanII GRGCYC 3 cut(s) 682, 1065, 2044
BarI GAAGNNNNNNTAC 2 cut(s) 1065, 1097
Bbv12I GWGCWC 2 cut(s) 577, 856
BbvI GCAGC 6 cut(s) 1198, 2014, 2105, 2421, 2657, 2661
BccI CCATC 8 cut(s) 153, 2409, 2467, 2494, 2606, 2624, 2643, 2733
BceAI ACGGC 2 cut(s) 1996, 2589
BciT130I CCWGG 3 cut(s) 325, 1990, 2235
BciVI GTATCC 1 cut(s) 891
BclI TGATCA 3 cut(s) 1038, 1341, 1819
BcnI CCSGG 1 cut(s) 1514
BcoDI GTCTC 5 cut(s) 278, 325, 779, 1726, 2513
BcuI ACTAGT 1 cut(s) 1528
BfaI CTAG 6 cut(s) 618, 894, 1529, 2081, 2147, 2177
BfmI CTRYAG 4 cut(s) 111, 1233, 2239, 2704
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 891
BglII AGATCT 1 cut(s) 1954
BisI GCNGC 6 cut(s) 1187, 2028, 2094, 2435, 2646, 2675
BlpI GCTNAGC 1 cut(s) 2438
BlsI GCNGC 6 cut(s) 1188, 2029, 2095, 2436, 2647, 2676
BmcAI AGTACT 2 cut(s) 1083, 2380
Bme1390I CCNGG 4 cut(s) 325, 1514, 1990, 2235
BmeT110I CYCGRG 2 cut(s) 1380, 2534
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 3 cut(s) 608, 912, 1107
BmrFI CCNGG 4 cut(s) 325, 1514, 1990, 2235
BmsI GCATC 9 cut(s) 68, 175, 361, 985, 1296, 1926, 2351, 2445, 2722
BoxI GACNNNNGTC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 1090, 1122
BpmI CTGGAG 4 cut(s) 122, 524, 2348, 2569
Bpu1102I GCTNAGC 1 cut(s) 2438
BpuEI CTTGAG 1 cut(s) 1578
BpuMI CCSGG 1 cut(s) 1514
BsaAI YACGTR 1 cut(s) 857
BsaBI GATNNNNATC 2 cut(s) 2634, 2724
BsaI GGTCTC 1 cut(s) 1726
BsaJI CCNNGG 3 cut(s) 94, 463, 1192
BsaWI WCCGGW 1 cut(s) 2480
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 2 cut(s) 2058, 2480
Bse1I ACTGG 5 cut(s) 507, 1366, 2331, 2530, 2552
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 2 cut(s) 78, 2013
Bse8I GATNNNNATC 2 cut(s) 2634, 2724
BseBI CCWGG 3 cut(s) 325, 1990, 2235
BseDI CCNNGG 3 cut(s) 94, 463, 1192
BseJI GATNNNNATC 2 cut(s) 2634, 2724
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 78, 2013
BseMII CTCAG 6 cut(s) 297, 357, 579, 790, 856, 2408
BseNI ACTGG 5 cut(s) 507, 1366, 2331, 2530, 2552
BseRI GAGGAG 2 cut(s) 1213, 2345
BseSI GKGCMC 2 cut(s) 577, 856
BseXI GCAGC 6 cut(s) 1198, 2014, 2105, 2421, 2657, 2661
BseYI CCCAGC 1 cut(s) 1970
BsgI GTGCAG 1 cut(s) 1601
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 7 cut(s) 99, 482, 1161, 1473, 1857, 1988, 2634
BshTI ACCGGT 1 cut(s) 2480
BsiHKAI GWGCWC 2 cut(s) 577, 856
BsiHKCI CYCGRG 2 cut(s) 1380, 2534
BsiSI CCGG 5 cut(s) 1514, 2059, 2481, 2617, 2655
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 5 cut(s) 278, 325, 779, 1726, 2513
BsmBI CGTCTC 1 cut(s) 325
BsmI GAATGC 2 cut(s) 1246, 1735
BsnI GGCC 7 cut(s) 99, 482, 1161, 1473, 1857, 1988, 2634
Bso31I GGTCTC 1 cut(s) 1726
BsoBI CYCGRG 2 cut(s) 1380, 2534
Bsp1286I GDGCHC 5 cut(s) 577, 682, 856, 1065, 2044
Bsp1407I TGTACA 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 2438
Bsp19I CCATGG 2 cut(s) 94, 1192
BspACI CCGC 2 cut(s) 939, 2469
BspANI GGCC 7 cut(s) 99, 482, 1161, 1473, 1857, 1988, 2634
BspCNI CTCAG 6 cut(s) 298, 358, 580, 789, 855, 2407
BspFNI CGCG 1 cut(s) 251
BspHI TCATGA 2 cut(s) 1632, 2728
BspLI GGNNCC 3 cut(s) 608, 912, 1107
BspMAI CTGCAG 1 cut(s) 2708
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 5 cut(s) 601, 614, 1529, 2665, 2727
BspQI GCTCTTC 1 cut(s) 2049
BspTNI GGTCTC 1 cut(s) 1726
BsrDI GCAATG 2 cut(s) 78, 2013
BsrFI RCCGGY 2 cut(s) 2058, 2480
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 5 cut(s) 507, 1366, 2331, 2530, 2552
BssAI RCCGGY 2 cut(s) 2058, 2480
BssECI CCNNGG 3 cut(s) 94, 463, 1192
BssNAI GTATAC 2 cut(s) 860, 1485
BssT1I CCWWGG 3 cut(s) 94, 463, 1192
Bst1107I GTATAC 2 cut(s) 860, 1485
Bst2UI CCWGG 3 cut(s) 325, 1990, 2235
Bst4CI ACNGT 8 cut(s) 319, 413, 638, 838, 972, 1086, 1141, 2281
Bst6I CTCTTC 1 cut(s) 2049
BstAPI GCANNNNNTGC 3 cut(s) 1748, 2090, 2712
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 857
BstDEI CTNAG 9 cut(s) 65, 306, 366, 588, 776, 842, 2394, 2438, 2661
BstDSI CCRYGG 2 cut(s) 94, 1192
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 251
BstMAI GTCTC 5 cut(s) 278, 325, 779, 1726, 2513
BstNI CCWGG 3 cut(s) 325, 1990, 2235
BstNSI RCATGY 7 cut(s) 19, 160, 852, 893, 1172, 1932, 2273
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 4 cut(s) 323, 1512, 1988, 2233
BstSFI CTRYAG 4 cut(s) 111, 1233, 2239, 2704
BstSLI GKGCMC 2 cut(s) 577, 856
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 6 cut(s) 1198, 2014, 2105, 2421, 2657, 2661
BstX2I RGATCY 3 cut(s) 606, 1954, 2657
BstYI RGATCY 3 cut(s) 606, 1954, 2657
BstZ17I GTATAC 2 cut(s) 860, 1485
Bsu36I CCTNAGG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 7 cut(s) 99, 482, 1161, 1473, 1857, 1988, 2634
BtgI CCRYGG 2 cut(s) 94, 1192
BtgZI GCGATG 1 cut(s) 2051
BtsIMutI CAGTG 3 cut(s) 834, 850, 1048
BveI ACCTGC 1 cut(s) 979
CaiI CAGNNNCTG 1 cut(s) 1548
CciI TCATGA 2 cut(s) 1632, 2728
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 2 cut(s) 2058, 2480
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 2012
Csp6I GTAC 6 cut(s) 160, 559, 839, 1082, 2267, 2379
CspAI ACCGGT 1 cut(s) 2480
CviQI GTAC 6 cut(s) 160, 559, 839, 1082, 2267, 2379
DdeI CTNAG 9 cut(s) 65, 306, 366, 588, 776, 842, 2394, 2438, 2661
DrdI GACNNNNNNGTC 1 cut(s) 337
DseDI GACNNNNNNGTC 1 cut(s) 337
EaeI YGGCCR 3 cut(s) 97, 1855, 2632
Eam1104I CTCTTC 1 cut(s) 2049
EarI CTCTTC 1 cut(s) 2049
Eco130I CCWWGG 3 cut(s) 94, 463, 1192
Eco147I AGGCCT 1 cut(s) 1473
Eco24I GRGCYC 3 cut(s) 682, 1065, 2044
Eco31I GGTCTC 1 cut(s) 1726
Eco57I CTGAAG 3 cut(s) 470, 1876, 2403
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 2 cut(s) 1380, 2534
EcoRII CCWGG 3 cut(s) 323, 1988, 2233
EcoT14I CCWWGG 3 cut(s) 94, 463, 1192
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 3 cut(s) 682, 1065, 2044
ErhI CCWWGG 3 cut(s) 94, 463, 1192
Esp3I CGTCTC 1 cut(s) 325
FauI CCCGC 2 cut(s) 932, 2462
FauNDI CATATG 2 cut(s) 687, 1794
FbaI TGATCA 3 cut(s) 1038, 1341, 1819
FblI GTMKAC 4 cut(s) 258, 499, 859, 1484
Fnu4HI GCNGC 6 cut(s) 1187, 2028, 2094, 2435, 2646, 2675
FriOI GRGCYC 3 cut(s) 682, 1065, 2044
Fsp4HI GCNGC 6 cut(s) 1187, 2028, 2094, 2435, 2646, 2675
FspBI CTAG 6 cut(s) 618, 894, 1529, 2081, 2147, 2177
GlaI GCGC 1 cut(s) 250
GluI GCNGC 6 cut(s) 1187, 2028, 2094, 2435, 2646, 2675
GsaI CCCAGC 1 cut(s) 1974
GsuI CTGGAG 4 cut(s) 122, 524, 2348, 2569
HaeIII GGCC 7 cut(s) 99, 482, 1161, 1473, 1857, 1988, 2634
HapII CCGG 5 cut(s) 1514, 2059, 2481, 2617, 2655
HgaI GACGC 1 cut(s) 2012
HhaI GCGC 1 cut(s) 251
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
HindIII AAGCTT 4 cut(s) 51, 1074, 2181, 2414
HinfI GANTC 8 cut(s) 122, 403, 772, 799, 1047, 1697, 2126, 2579
HpaI GTTAAC 1 cut(s) 1510
HpaII CCGG 5 cut(s) 1514, 2059, 2481, 2617, 2655
HphI GGTGA 4 cut(s) 1786, 2540, 2639, 2714
Hpy188I TCNGA 3 cut(s) 674, 2164, 2559
HpyAV CCTTC 8 cut(s) 442, 442, 494, 669, 1463, 1491, 1765, 2153
HpyCH4III ACNGT 8 cut(s) 319, 413, 638, 838, 972, 1086, 1141, 2281
HpyCH4IV ACGT 4 cut(s) 214, 709, 856, 2573
HpyF3I CTNAG 9 cut(s) 65, 306, 366, 588, 776, 842, 2394, 2438, 2661
HpySE526I ACGT 4 cut(s) 214, 709, 856, 2573
HspAI GCGC 1 cut(s) 249
KroI GCCGGC 1 cut(s) 2058
KroNI GCCGGC 1 cut(s) 2060
Ksp22I TGATCA 3 cut(s) 1038, 1341, 1819
KspAI GTTAAC 1 cut(s) 1510
LguI GCTCTTC 1 cut(s) 2049
LmnI GCTCC 6 cut(s) 1111, 1183, 1194, 2403, 2515, 2619
Lsp1109I GCAGC 6 cut(s) 1198, 2014, 2105, 2421, 2657, 2661
LweI GCATC 9 cut(s) 68, 175, 361, 985, 1296, 1926, 2351, 2445, 2722
MaeI CTAG 6 cut(s) 618, 894, 1529, 2081, 2147, 2177
MaeII ACGT 4 cut(s) 214, 709, 856, 2573
MaeIII GTNAC 8 cut(s) 24, 266, 407, 467, 1249, 1531, 1870, 1974
MboII GAAGA 5 cut(s) 1478, 1919, 2036, 2356, 2363
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 3 cut(s) 606, 1954, 2657
MhlI GDGCHC 5 cut(s) 577, 682, 856, 1065, 2044
MlsI TGGCCA 3 cut(s) 99, 1857, 2634
MluNI TGGCCA 3 cut(s) 99, 1857, 2634
MlyI GAGTC 3 cut(s) 116, 781, 1056
MmeI TCCRAC 3 cut(s) 212, 611, 1403
Mox20I TGGCCA 3 cut(s) 99, 1857, 2634
Mph1103I ATGCAT 1 cut(s) 1056
MroNI GCCGGC 1 cut(s) 2058
MscI TGGCCA 3 cut(s) 99, 1857, 2634
MseI TTAA 8 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256, 2746
MslI CAYNNNNRTG 7 cut(s) 698, 888, 1167, 2406, 2628, 2727, 2730
Msp20I TGGCCA 3 cut(s) 99, 1857, 2634
MspI CCGG 5 cut(s) 1514, 2059, 2481, 2617, 2655
MspR9I CCNGG 4 cut(s) 325, 1514, 1990, 2235
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 2 cut(s) 1246, 1735
MvaI CCWGG 3 cut(s) 325, 1990, 2235
MvnI CGCG 1 cut(s) 251
NaeI GCCGGC 1 cut(s) 2060
NciI CCSGG 1 cut(s) 1514
NcoI CCATGG 2 cut(s) 94, 1192
NdeI CATATG 2 cut(s) 687, 1794
NgoMIV GCCGGC 1 cut(s) 2058
NlaIV GGNNCC 3 cut(s) 608, 912, 1107
NmuCI GTSAC 4 cut(s) 24, 266, 407, 467
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 7 cut(s) 19, 160, 852, 893, 1172, 1932, 2273
PaeI GCATGC 1 cut(s) 893
PagI TCATGA 2 cut(s) 1632, 2728
PaqCI CACCTGC 1 cut(s) 979
PceI AGGCCT 1 cut(s) 1473
PciI ACATGT 3 cut(s) 156, 1928, 2269
PciSI GCTCTTC 1 cut(s) 2049
PcsI WCGNNNNNNNCGW 1 cut(s) 2579
PctI GAATGC 2 cut(s) 1246, 1735
PdiI GCCGGC 1 cut(s) 2060
PfeI GAWTC 5 cut(s) 403, 799, 1697, 2126, 2579
PfoI TCCNGGA 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 2480
PkrI GCNGC 6 cut(s) 1188, 2029, 2095, 2436, 2647, 2676
PleI GAGTC 3 cut(s) 116, 780, 1055
PpsI GAGTC 3 cut(s) 116, 780, 1055
Ppu21I YACGTR 1 cut(s) 857
PscI ACATGT 3 cut(s) 156, 1928, 2269
PshAI GACNNNNGTC 1 cut(s) 264
PsiI TTATAA 1 cut(s) 2076
Psp6I CCWGG 3 cut(s) 323, 1988, 2233
PspFI CCCAGC 1 cut(s) 1970
PspGI CCWGG 3 cut(s) 323, 1988, 2233
PspN4I GGNNCC 3 cut(s) 608, 912, 1107
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 2708
PstNI CAGNNNCTG 1 cut(s) 1548
PsuI RGATCY 3 cut(s) 606, 1954, 2657
RsaI GTAC 6 cut(s) 161, 560, 840, 1083, 2268, 2380
RsaNI GTAC 6 cut(s) 160, 559, 839, 1082, 2267, 2379
RseI CAYNNNNRTG 7 cut(s) 698, 888, 1167, 2406, 2628, 2727, 2730
SapI GCTCTTC 1 cut(s) 2049
SaqAI TTAA 8 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256, 2746
SatI GCNGC 6 cut(s) 1187, 2028, 2094, 2435, 2646, 2675
Sau96I GGNCC 1 cut(s) 481
ScaI AGTACT 2 cut(s) 1083, 2380
SchI GAGTC 3 cut(s) 116, 781, 1056
ScrFI CCNGG 4 cut(s) 325, 1514, 1990, 2235
SduI GDGCHC 5 cut(s) 577, 682, 856, 1065, 2044
SfaNI GCATC 9 cut(s) 68, 175, 361, 985, 1296, 1926, 2351, 2445, 2722
SfcI CTRYAG 4 cut(s) 111, 1233, 2239, 2704
SmiMI CAYNNNNRTG 7 cut(s) 698, 888, 1167, 2406, 2628, 2727, 2730
SmlI CTYRAG 1 cut(s) 1593
SmoI CTYRAG 1 cut(s) 1593
SpeI ACTAGT 1 cut(s) 1528
SphI GCATGC 1 cut(s) 893
SseBI AGGCCT 1 cut(s) 1473
SsiI CCGC 2 cut(s) 939, 2469
SspI AATATT 3 cut(s) 1388, 1566, 2694
SspMI CTAG 6 cut(s) 618, 894, 1529, 2081, 2147, 2177
StuI AGGCCT 1 cut(s) 1473
StyD4I CCNGG 4 cut(s) 323, 1512, 1988, 2233
StyI CCWWGG 3 cut(s) 94, 463, 1192
TaaI ACNGT 8 cut(s) 319, 413, 638, 838, 972, 1086, 1141, 2281
TaiI ACGT 4 cut(s) 217, 712, 859, 2576
TaqI TCGA 6 cut(s) 71, 580, 1093, 1779, 1966, 2582
TaqII GACCGA 2 cut(s) 1919, 2714
TatI WGTACW 5 cut(s) 159, 558, 838, 1081, 2378
TfiI GAWTC 5 cut(s) 403, 799, 1697, 2126, 2579
Tru1I TTAA 8 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256, 2746
Tru9I TTAA 8 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256, 2746
TscAI CASTG 3 cut(s) 841, 850, 1048
TseFI GTSAC 4 cut(s) 24, 266, 407, 467
TseI GCWGC 6 cut(s) 1186, 2027, 2093, 2434, 2645, 2674
Tsp45I GTSAC 4 cut(s) 24, 266, 407, 467
TspGWI ACGGA 2 cut(s) 893, 1997
TspRI CASTG 3 cut(s) 841, 850, 1048
VneI GTGCAC 2 cut(s) 573, 852
XapI RAATTY 6 cut(s) 31, 195, 1714, 1993, 2087, 2101
XceI RCATGY 7 cut(s) 19, 160, 852, 893, 1172, 1932, 2273
XmiI GTMKAC 4 cut(s) 258, 499, 859, 1484
XspI CTAG 6 cut(s) 618, 894, 1529, 2081, 2147, 2177
ZrmI AGTACT 2 cut(s) 1083, 2380
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.