Rw5G029650

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016250
Physical Location & Seq
Forward (+)
45938518 .. 45941247
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029650.1

Sequence Viewer

Length: 2730 bp
ATGATGTCAATTCATCATCCATTGAAGCATCTCCGGATTTTTTCAGGCCTAATGGTTCGCTGTATCTCAACCCAAGAAAATATTTTGTCAAACCTTATTCTCTGCCATGATCCCTCCACGGAACAATCTTACATGCAATTGTCACAAAAATTCTATGAATCCATGAAAGCTTGTGCATCTCTAAGGTCGATCCCCATTGCCCGAAAACTCCATGGCCAACTCATTTCTGTAGGATTGGACTCTGCCATTTTCCTTCAGAACCATCTCTTGCATATGTATTCCCGTTGCAGCTTGATAGATGATGCTCGCCGGATTTTCTTCAGTATCCAACATCCTAATGTGTTTAGTTGGAATACAATGATTAGCGCGTTGGTAGACTTGGGTCACATGGGGGAGGCAGAGAAGTTGTTCAATGAAATGCCTGAGAGAGACTCCGTCTCTTGGACTACAATGATGTCTGGCCATTTTCATAATGGGCAACCTAAGGATGCAATTAAAGTGTTTGCTTCAATGCTATGGAATTGTGATAGTTTCTATGACCCATTTTCCTTCTCTTGTGTAATGAAGGCTTGTGGTAGTCTTGGTCACATTAAGTTGGCTCTTCAGTTGCATACTCTAGTGGAGAAATTAAATTTTGGAGGCAACATGGTTATTCAAAATTCTATAATTGACATGTACATCAAGTGTGGTGCACTGCGTTTGGCTGAGAGAATGTTTATGAGGATCCCTAATCCTAGTTTGTTTTGTTGGAACAGTATGATCTATGGCTGCTCTAAACTTTATGGGGTCAGAAGGGCTCTCCATATGTTCATTGAAATGCCTGAACGTGATTGTGTGTCTTGGAATACCATAATATCAATCTTTTCTCAACATGGTTTTGGGGTTGAGAGTCTTAGTATGTTTGTTGAGATGTGGAACCATGGTTTTAGACCAAATGCTATGATATATGCTACTATACTTAGTGCATGTGCAAGTATACATGATCTTGAATGGGGTAGCCATTTGCATGCTCGGATACTCCGTATAGAACCAAGTATGGATGTTTTTGCAGGTAGTGGGCTGATTGATATGTATGTGAAATGTGGACAGTTGCATCTTGCTAGGCAGGTGTTTGACAACATGACAGAACACAATGCAGTTTCTTGGACTTCTATGATCAGTGGAGCCATGCAGTTTGGGCTTGAAGATGAAGCTTTAGTACTGTTTAACCGAATGAGAAAATCTCCTATTGCCTTGGATGAGTTTACTCTTGCAACAGTTCTTGGGGTTTGTTCAGGCCATGAGCATGCTTGGGTTGGGGAGCAGCTCCATGGATATACAATCAAAGGTGGAATGATCTCCTCTATTCCTGTAGGGAATGCTCTTGTTACGATGTATGCAAAATGTGGAAACACTGATAAAGCCAGCCAAGCATTTGAGTTGATGCCTGCTAAAGATATAATATCATGGACAGCCATGATCACAGCATTCTCTCAAACTGGTAATGTTGAAAAATCCCGAGAGTATTTTGATAAAATGCCAGAGCGAAATGTCATAAGTTGGAACTCAATGTTAGGAACATATTTCCAAAATGGTTTATGGGAAGAAGGCCTTAAATTGTATACACTTATGCGAAGGGTAGGGGTTAACCTGGATTGGATCACACTAGTAACTTCAATCAGTGCCTGTGCTGATTTGGCAATATTGAAACTTGGGCTGCAGATTATAGCTCAAGCTGAAAAATTAGGATTTGGTTCTAATGTTTCAGTCATGAATAGCATTATTACTATGTATTCAAGATGTGGACGAATTATAGAAGCGAAAAGAGTGTTTGATTCAATATGTGATAAAAATTTGATTTCTTGGAATGCAATTATGGCTGGATATGCTCAAAATGGACAAGGTAGGAAGGTGATCGAGGTTTTTGAGAATATGTTGAAAATGGACTGCGCACCTGATCATATAAGCTATGTATCTGTTCTATCAGGTTGTGGCCATTCAGGGCTTGTAACAGAGGGGAAACACTACTTCAGTTCTATGACTGAAGATTTTGGCATCAATCCTACATGTGAACATTTTGCTTGTATGGTAGATCTACTTGGTCGGGCTGGGTTACTGAAGGAGGCCAGGAATTTGATTGATGCAATGCCCTTTAAGCCAAATGCTGCTATCTGGGGAGCTCTTCTTGGTGCTTGCCGGCTTCATCGCGATTATAATTTAGCAGAATTTGCAGCAAGAAATTTGCTTGAATTAGATTTAGATGATTCTGGCAGTTATGTCCTTCTAGCTAATACATATTCAGATTGTGGACAACTAGAAGCTTTTGCAGATGTAAGAAAACAGATGAGAAAGAAAGGAATAGAGAAACATCCTGGATGTAGCTGGATAGAGGTTAATAATAGGGTACACGTGTTCACTGTAGATGACACTAATCATCCACAAATCAAGGACGTTTATAGAATACTAGAGGAGATAGTCAAGAAGATAGAAGATACAGGATGCTATGTCAATCCAACTAATGCAGTTCGTTCTCAGTGCCATCACAGTGAGAAGCTTGCTGTTGCTTTTGGGTTGCTTAGCTTGCCTGCTTGGATGCCTATCTATGTAATGAAAAATCTTCGAGTTTGCCATGATTGTCACTTGGTAATCAAGCTGATCTCCCTTGTTACCTCAAGGGAACTTATTGTGCGGGATGGACACCGGTTTCATCATTTCAAGGATGGATGTTGCACCTGTGGAGACTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

909

Amino Acids

102.46

Weight (kDa)

6.78

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 111 - 140 4.4e-06 PPR repeat
PPR_2 PF13041 112 - 143 3.9e-08 PPR repeat family
PPR PF01535 115 - 143 2.7e-07 PPR repeat
PPR_2 PF13041 144 - 191 1.4e-06 PPR repeat family
PPR_2 PF13041 378 - 423 3.4e-06 PPR repeat family
PPR PF01535 481 - 511 3.3e-06 PPR repeat
PPR_2 PF13041 509 - 557 5.8e-08 PPR repeat family
PPR_2 PF13041 611 - 658 4.5e-11 PPR repeat family
PPR PF01535 613 - 643 7.7e-06 PPR repeat
E_motif PF20431 728 - 790 4.7e-20 E motif
DYW_deaminase PF14432 838 - 909 4e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00672 FvH4_3g26580
malus_domestica MD03G1153100.v1.1
prunus_persica Prupe.6G140100_v2.0.a1
pyrus_communis pycom03g10670
rosa_chinensis RchiOBHm_Chr5g0048221
rosa_laevigata RLG00000034503
rosa_multiflora Rmu_sc0001408.1_g000005
rosa_roxburghii Rroxscaffold_1G00033660
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316300 Rh5BG327000 Rh5CG353200 Rh5DG338100
rosa_wichuraiana Rw5G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2193
AarI CACCTGC 1 cut(s) 1096
Acc16I TGCGCA 1 cut(s) 1930
Acc36I ACCTGC 2 cut(s) 1040, 1096
AccI GTMKAC 3 cut(s) 375, 976, 1601
AccII CGCG 2 cut(s) 368, 2187
AccIII TCCGGA 1 cut(s) 33
AciI CCGC 1 cut(s) 2668
AclWI GGATC 5 cut(s) 104, 184, 718, 731, 1646
AcoI YGGCCR 3 cut(s) 214, 460, 1972
AcsI RAATTY 7 cut(s) 149, 631, 658, 1831, 2110, 2204, 2218
AcuI CTGAAG 6 cut(s) 239, 304, 587, 1993, 2043, 2117
AcvI CACGTG 1 cut(s) 2389
AfaI GTAC 3 cut(s) 677, 1200, 2385
AfiI CCNNNNNNNGG 1 cut(s) 441
AflIII ACRYGT 4 cut(s) 672, 2045, 2386, 2388
AgeI ACCGGT 1 cut(s) 2679
AhlI ACTAGT 1 cut(s) 1645
AjnI CCWGG 3 cut(s) 1629, 2105, 2350
Alw21I GWGCWC 2 cut(s) 694, 2161
Alw26I GTCTC 3 cut(s) 423, 442, 2712
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 5 cut(s) 104, 184, 718, 731, 1646
AlwNI CAGNNNCTG 1 cut(s) 1665
Ama87I CYCGRG 1 cut(s) 1497
Aor13HI TCCGGA 1 cut(s) 33
AoxI GGCC 7 cut(s) 46, 214, 460, 1276, 1588, 1972, 2103
ApaLI GTGCAC 1 cut(s) 690
ApeKI GCWGC 6 cut(s) 288, 768, 1303, 1696, 2144, 2210
ApoI RAATTY 7 cut(s) 149, 631, 658, 1831, 2110, 2204, 2218
AsiGI ACCGGT 1 cut(s) 2679
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 2 cut(s) 368, 1931
AsuHPI GGTGA 1 cut(s) 1903
AvaI CYCGRG 1 cut(s) 1497
AxyI CCTNAGG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 694
BaeI ACNNNNGTAYC 2 cut(s) 2375, 2408
BalI TGGCCA 3 cut(s) 216, 462, 1974
BamHI GGATCC 1 cut(s) 723
BanII GRGCYC 2 cut(s) 799, 2161
BarI GAAGNNNNNNTAC 2 cut(s) 1182, 1214
BbrPI CACGTG 1 cut(s) 2389
Bbv12I GWGCWC 2 cut(s) 694, 2161
BbvI GCAGC 6 cut(s) 300, 755, 1315, 1683, 2131, 2222
BccI CCATC 4 cut(s) 270, 2526, 2666, 2693
BciT130I CCWGG 3 cut(s) 1631, 2107, 2352
BciVI GTATCC 2 cut(s) 335, 1008
BclI TGATCA 3 cut(s) 1155, 1458, 1936
BcoDI GTCTC 3 cut(s) 423, 442, 2712
BcuI ACTAGT 1 cut(s) 1645
BfaI CTAG 7 cut(s) 617, 735, 1101, 1646, 2264, 2294, 2444
BfmI CTRYAG 4 cut(s) 228, 1350, 1697, 2397
BfuAI ACCTGC 2 cut(s) 1040, 1096
BfuI GTATCC 2 cut(s) 335, 1008
BglII AGATCT 1 cut(s) 2071
BisI GCNGC 6 cut(s) 289, 769, 1304, 1697, 2145, 2211
BlpI GCTNAGC 1 cut(s) 2555
BlsI GCNGC 6 cut(s) 290, 770, 1305, 1698, 2146, 2212
BmcAI AGTACT 1 cut(s) 1200
Bme1390I CCNGG 3 cut(s) 1631, 2107, 2352
BmeT110I CYCGRG 1 cut(s) 1497
BmiI GGNNCC 3 cut(s) 725, 917, 1165
BmrFI CCNGG 3 cut(s) 1631, 2107, 2352
BoxI GACNNNNGTC 1 cut(s) 381
BplI GAGNNNNNCTC 4 cut(s) 416, 448, 1207, 1239
Bpu1102I GCTNAGC 1 cut(s) 2555
BpuEI CTTGAG 2 cut(s) 1695, 2635
BsaAI YACGTR 1 cut(s) 2389
BsaBI GATNNNNATC 1 cut(s) 2576
BsaJI CCNNGG 5 cut(s) 117, 211, 919, 1233, 1309
BsaWI WCCGGW 2 cut(s) 33, 2679
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse118I RCCGGY 2 cut(s) 2175, 2679
Bse1I ACTGG 2 cut(s) 1483, 2729
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 2 cut(s) 195, 2130
Bse8I GATNNNNATC 1 cut(s) 2576
BseAI TCCGGA 1 cut(s) 33
BseBI CCWGG 3 cut(s) 1631, 2107, 2352
BseDI CCNNGG 5 cut(s) 117, 211, 919, 1233, 1309
BseJI GATNNNNATC 1 cut(s) 2576
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMI GCAATG 2 cut(s) 195, 2130
BseMII CTCAG 3 cut(s) 414, 696, 2525
BseNI ACTGG 2 cut(s) 1483, 2729
BseRI GAGGAG 2 cut(s) 1330, 2462
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 6 cut(s) 300, 755, 1315, 1683, 2131, 2222
BseYI CCCAGC 1 cut(s) 2087
Bsh1236I CGCG 2 cut(s) 368, 2187
BshFI GGCC 7 cut(s) 48, 216, 462, 1278, 1590, 1974, 2105
BshTI ACCGGT 1 cut(s) 2679
BsiHKAI GWGCWC 2 cut(s) 694, 2161
BsiHKCI CYCGRG 1 cut(s) 1497
BsiSI CCGG 4 cut(s) 34, 310, 2176, 2680
BslI CCNNNNNNNGG 1 cut(s) 441
BsmAI GTCTC 3 cut(s) 423, 442, 2712
BsmBI CGTCTC 1 cut(s) 442
BsmI GAATGC 3 cut(s) 1363, 1466, 1852
BsnI GGCC 7 cut(s) 48, 216, 462, 1278, 1590, 1974, 2105
BsoBI CYCGRG 1 cut(s) 1497
Bsp1286I GDGCHC 3 cut(s) 694, 799, 2161
Bsp13I TCCGGA 1 cut(s) 33
Bsp1407I TGTACA 1 cut(s) 675
Bsp1720I GCTNAGC 1 cut(s) 2555
Bsp19I CCATGG 3 cut(s) 211, 919, 1309
Bsp68I TCGCGA 1 cut(s) 2187
BspACI CCGC 1 cut(s) 2668
BspANI GGCC 7 cut(s) 48, 216, 462, 1278, 1590, 1974, 2105
BspCNI CTCAG 3 cut(s) 415, 697, 2524
BspEI TCCGGA 1 cut(s) 33
BspFNI CGCG 2 cut(s) 368, 2187
BspHI TCATGA 1 cut(s) 1749
BspLI GGNNCC 3 cut(s) 725, 917, 1165
BspMAI CTGCAG 1 cut(s) 1701
BspMI ACCTGC 2 cut(s) 1040, 1096
BspPI GGATC 5 cut(s) 104, 184, 718, 731, 1646
BspQI GCTCTTC 2 cut(s) 606, 2166
BsrDI GCAATG 2 cut(s) 195, 2130
BsrFI RCCGGY 2 cut(s) 2175, 2679
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 2 cut(s) 1483, 2729
BssAI RCCGGY 2 cut(s) 2175, 2679
BssECI CCNNGG 5 cut(s) 117, 211, 919, 1233, 1309
BssNAI GTATAC 2 cut(s) 977, 1602
BssT1I CCWWGG 4 cut(s) 211, 919, 1233, 1309
Bst1107I GTATAC 2 cut(s) 977, 1602
Bst2UI CCWGG 3 cut(s) 1631, 2107, 2352
Bst4CI ACNGT 6 cut(s) 755, 1089, 1203, 1258, 2398, 2525
Bst6I CTCTTC 2 cut(s) 606, 2166
BstAPI GCANNNNNTGC 1 cut(s) 2207
BstAUI TGTACA 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 2389
BstDEI CTNAG 8 cut(s) 182, 423, 483, 705, 893, 959, 2511, 2555
BstDSI CCRYGG 4 cut(s) 117, 211, 919, 1309
BstFNI CGCG 2 cut(s) 368, 2187
BstHHI GCGC 2 cut(s) 368, 1931
BstMAI GTCTC 3 cut(s) 423, 442, 2712
BstMWI GCNNNNNNNGC 8 cut(s) 1177, 1409, 1676, 1856, 1865, 2134, 2207, 2560
BstNI CCWGG 3 cut(s) 1631, 2107, 2352
BstNSI RCATGY 6 cut(s) 136, 676, 969, 1010, 1289, 2049
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 3 cut(s) 1629, 2105, 2350
BstSFI CTRYAG 4 cut(s) 228, 1350, 1697, 2397
BstSLI GKGCMC 1 cut(s) 694
BstUI CGCG 2 cut(s) 368, 2187
BstV1I GCAGC 6 cut(s) 300, 755, 1315, 1683, 2131, 2222
BstX2I RGATCY 2 cut(s) 723, 2071
BstYI RGATCY 2 cut(s) 723, 2071
BstZ17I GTATAC 2 cut(s) 977, 1602
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 2 cut(s) 335, 1008
BsuRI GGCC 7 cut(s) 48, 216, 462, 1278, 1590, 1974, 2105
BtgI CCRYGG 4 cut(s) 117, 211, 919, 1309
BtgZI GCGATG 1 cut(s) 2168
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 7 cut(s) 692, 1165, 1392, 1666, 2394, 2519, 2530
BtuMI TCGCGA 1 cut(s) 2187
BveI ACCTGC 2 cut(s) 1040, 1096
CaiI CAGNNNCTG 1 cut(s) 1665
CciI TCATGA 1 cut(s) 1749
CfoI GCGC 2 cut(s) 368, 1931
Cfr10I RCCGGY 2 cut(s) 2175, 2679
Csp6I GTAC 3 cut(s) 676, 1199, 2384
CspAI ACCGGT 1 cut(s) 2679
CviQI GTAC 3 cut(s) 676, 1199, 2384
DdeI CTNAG 8 cut(s) 182, 423, 483, 705, 893, 959, 2511, 2555
EaeI YGGCCR 3 cut(s) 214, 460, 1972
Eam1104I CTCTTC 2 cut(s) 606, 2166
EarI CTCTTC 2 cut(s) 606, 2166
Ecl136II GAGCTC 1 cut(s) 2159
Eco130I CCWWGG 4 cut(s) 211, 919, 1233, 1309
Eco147I AGGCCT 2 cut(s) 48, 1590
Eco24I GRGCYC 2 cut(s) 799, 2161
Eco53kI GAGCTC 1 cut(s) 2159
Eco57I CTGAAG 6 cut(s) 239, 304, 587, 1993, 2043, 2117
Eco72I CACGTG 1 cut(s) 2389
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 1497
EcoICRI GAGCTC 1 cut(s) 2159
EcoRII CCWGG 3 cut(s) 1629, 2105, 2350
EcoT14I CCWWGG 4 cut(s) 211, 919, 1233, 1309
EcoT38I GRGCYC 2 cut(s) 799, 2161
ErhI CCWWGG 4 cut(s) 211, 919, 1233, 1309
Esp3I CGTCTC 1 cut(s) 442
FalI AAGNNNNNCTT 2 cut(s) 1575, 1607
FauI CCCGC 1 cut(s) 2661
FauNDI CATATG 2 cut(s) 273, 804
FbaI TGATCA 3 cut(s) 1155, 1458, 1936
FblI GTMKAC 3 cut(s) 375, 976, 1601
Fnu4HI GCNGC 6 cut(s) 289, 769, 1304, 1697, 2145, 2211
FriOI GRGCYC 2 cut(s) 799, 2161
Fsp4HI GCNGC 6 cut(s) 289, 769, 1304, 1697, 2145, 2211
FspBI CTAG 7 cut(s) 617, 735, 1101, 1646, 2264, 2294, 2444
FspI TGCGCA 1 cut(s) 1930
GlaI GCGC 2 cut(s) 367, 1930
GluI GCNGC 6 cut(s) 289, 769, 1304, 1697, 2145, 2211
GsaI CCCAGC 1 cut(s) 2091
HaeIII GGCC 7 cut(s) 48, 216, 462, 1278, 1590, 1974, 2105
HapII CCGG 4 cut(s) 34, 310, 2176, 2680
HhaI GCGC 2 cut(s) 368, 1931
Hin6I GCGC 2 cut(s) 366, 1929
HinP1I GCGC 2 cut(s) 366, 1929
HincII GTYRAC 1 cut(s) 1627
HindII GTYRAC 1 cut(s) 1627
HindIII AAGCTT 4 cut(s) 168, 1191, 2298, 2531
HinfI GANTC 6 cut(s) 158, 239, 431, 889, 1814, 2243
HpaI GTTAAC 1 cut(s) 1627
HpaII CCGG 4 cut(s) 34, 310, 2176, 2680
HphI GGTGA 1 cut(s) 1903
Hpy188I TCNGA 4 cut(s) 258, 791, 1014, 2281
Hpy188III TCNNGA 7 cut(s) 34, 986, 1497, 1750, 1776, 2186, 2458
HpyAV CCTTC 9 cut(s) 263, 559, 559, 786, 1580, 1608, 1882, 2092, 2270
HpyCH4III ACNGT 6 cut(s) 755, 1089, 1203, 1258, 2398, 2525
HpyCH4IV ACGT 3 cut(s) 826, 2388, 2430
HpyF10VI GCNNNNNNNGC 8 cut(s) 1177, 1409, 1676, 1856, 1865, 2134, 2207, 2560
HpyF3I CTNAG 8 cut(s) 182, 423, 483, 705, 893, 959, 2511, 2555
HpySE526I ACGT 3 cut(s) 826, 2388, 2430
HspAI GCGC 2 cut(s) 366, 1929
Kpn2I TCCGGA 1 cut(s) 33
KroI GCCGGC 1 cut(s) 2175
KroNI GCCGGC 1 cut(s) 2177
Ksp22I TGATCA 3 cut(s) 1155, 1458, 1936
KspAI GTTAAC 1 cut(s) 1627
LguI GCTCTTC 2 cut(s) 606, 2166
LmnI GCTCC 4 cut(s) 1163, 1300, 1311, 2156
Lsp1109I GCAGC 6 cut(s) 300, 755, 1315, 1683, 2131, 2222
MaeI CTAG 7 cut(s) 617, 735, 1101, 1646, 2264, 2294, 2444
MaeII ACGT 3 cut(s) 826, 2388, 2430
MaeIII GTNAC 9 cut(s) 141, 383, 584, 1366, 1648, 1987, 2091, 2615, 2644
MboII GAAGA 9 cut(s) 310, 593, 1196, 1595, 2036, 2153, 2473, 2480, 2588
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 2 cut(s) 723, 2071
MhlI GDGCHC 3 cut(s) 694, 799, 2161
MlsI TGGCCA 3 cut(s) 216, 462, 1974
MluNI TGGCCA 3 cut(s) 216, 462, 1974
MlyI GAGTC 3 cut(s) 233, 425, 898
MmeI TCCRAC 5 cut(s) 329, 352, 728, 1520, 2516
Mox20I TGGCCA 3 cut(s) 216, 462, 1974
MroI TCCGGA 1 cut(s) 33
MroNI GCCGGC 1 cut(s) 2175
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 3 cut(s) 216, 462, 1974
MseI TTAA 8 cut(s) 495, 591, 629, 1206, 1593, 1626, 2133, 2373
MslI CAYNNNNRTG 5 cut(s) 336, 815, 1005, 1284, 2523
Msp20I TGGCCA 3 cut(s) 216, 462, 1974
MspI CCGG 4 cut(s) 34, 310, 2176, 2680
MspR9I CCNGG 3 cut(s) 1631, 2107, 2352
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 3 cut(s) 1363, 1466, 1852
MvaI CCWGG 3 cut(s) 1631, 2107, 2352
MvnI CGCG 2 cut(s) 368, 2187
MwoI GCNNNNNNNGC 8 cut(s) 1177, 1409, 1676, 1856, 1865, 2134, 2207, 2560
NaeI GCCGGC 1 cut(s) 2177
NcoI CCATGG 3 cut(s) 211, 919, 1309
NdeI CATATG 2 cut(s) 273, 804
NgoMIV GCCGGC 1 cut(s) 2175
NlaIV GGNNCC 3 cut(s) 725, 917, 1165
NmuCI GTSAC 4 cut(s) 141, 383, 584, 2615
NruI TCGCGA 1 cut(s) 2187
NsbI TGCGCA 1 cut(s) 1930
NspI RCATGY 6 cut(s) 136, 676, 969, 1010, 1289, 2049
PaeI GCATGC 2 cut(s) 1010, 1289
PagI TCATGA 1 cut(s) 1749
PaqCI CACCTGC 1 cut(s) 1096
PceI AGGCCT 2 cut(s) 48, 1590
PciI ACATGT 2 cut(s) 672, 2045
PciSI GCTCTTC 2 cut(s) 606, 2166
PcsI WCGNNNNNNNCGW 1 cut(s) 1018
PctI GAATGC 3 cut(s) 1363, 1466, 1852
PdiI GCCGGC 1 cut(s) 2177
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 158, 1814, 2243
PflFI GACNNNGTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 2350
PinAI ACCGGT 1 cut(s) 2679
PkrI GCNGC 6 cut(s) 290, 770, 1305, 1698, 2146, 2212
PleI GAGTC 3 cut(s) 233, 425, 897
PmaCI CACGTG 1 cut(s) 2389
PmlI CACGTG 1 cut(s) 2389
PpsI GAGTC 3 cut(s) 233, 425, 897
Ppu21I YACGTR 1 cut(s) 2389
PscI ACATGT 2 cut(s) 672, 2045
PshAI GACNNNNGTC 1 cut(s) 381
PsiI TTATAA 1 cut(s) 2193
Psp124BI GAGCTC 1 cut(s) 2161
Psp6I CCWGG 3 cut(s) 1629, 2105, 2350
PspCI CACGTG 1 cut(s) 2389
PspFI CCCAGC 1 cut(s) 2087
PspGI CCWGG 3 cut(s) 1629, 2105, 2350
PspN4I GGNNCC 3 cut(s) 725, 917, 1165
PstI CTGCAG 1 cut(s) 1701
PstNI CAGNNNCTG 1 cut(s) 1665
PsuI RGATCY 2 cut(s) 723, 2071
PsyI GACNNNGTC 1 cut(s) 434
RruI TCGCGA 1 cut(s) 2187
RsaI GTAC 3 cut(s) 677, 1200, 2385
RsaNI GTAC 3 cut(s) 676, 1199, 2384
RseI CAYNNNNRTG 5 cut(s) 336, 815, 1005, 1284, 2523
SacI GAGCTC 1 cut(s) 2161
SapI GCTCTTC 2 cut(s) 606, 2166
SaqAI TTAA 8 cut(s) 495, 591, 629, 1206, 1593, 1626, 2133, 2373
SatI GCNGC 6 cut(s) 289, 769, 1304, 1697, 2145, 2211
ScaI AGTACT 1 cut(s) 1200
SchI GAGTC 3 cut(s) 233, 425, 898
ScrFI CCNGG 3 cut(s) 1631, 2107, 2352
SduI GDGCHC 3 cut(s) 694, 799, 2161
SfcI CTRYAG 4 cut(s) 228, 1350, 1697, 2397
SmiMI CAYNNNNRTG 5 cut(s) 336, 815, 1005, 1284, 2523
SmlI CTYRAG 2 cut(s) 1710, 2650
SmoI CTYRAG 2 cut(s) 1710, 2650
SpeI ACTAGT 1 cut(s) 1645
SphI GCATGC 2 cut(s) 1010, 1289
SseBI AGGCCT 2 cut(s) 48, 1590
SsiI CCGC 1 cut(s) 2668
SspI AATATT 2 cut(s) 82, 1683
SspMI CTAG 7 cut(s) 617, 735, 1101, 1646, 2264, 2294, 2444
SstI GAGCTC 1 cut(s) 2161
StuI AGGCCT 2 cut(s) 48, 1590
StyD4I CCNGG 3 cut(s) 1629, 2105, 2350
StyI CCWWGG 4 cut(s) 211, 919, 1233, 1309
TaaI ACNGT 6 cut(s) 755, 1089, 1203, 1258, 2398, 2525
TaiI ACGT 3 cut(s) 829, 2391, 2433
TaqI TCGA 3 cut(s) 188, 1896, 2599
TatI WGTACW 2 cut(s) 675, 1198
TfiI GAWTC 3 cut(s) 158, 1814, 2243
Tru1I TTAA 8 cut(s) 495, 591, 629, 1206, 1593, 1626, 2133, 2373
Tru9I TTAA 8 cut(s) 495, 591, 629, 1206, 1593, 1626, 2133, 2373
TscAI CASTG 7 cut(s) 699, 1165, 1399, 1666, 2401, 2519, 2530
TseFI GTSAC 4 cut(s) 141, 383, 584, 2615
TseI GCWGC 6 cut(s) 288, 768, 1303, 1696, 2144, 2210
Tsp45I GTSAC 4 cut(s) 141, 383, 584, 2615
TspGWI ACGGA 3 cut(s) 134, 424, 1010
TspRI CASTG 7 cut(s) 699, 1165, 1399, 1666, 2401, 2519, 2530
Tth111I GACNNNGTC 1 cut(s) 434
VneI GTGCAC 1 cut(s) 690
XapI RAATTY 7 cut(s) 149, 631, 658, 1831, 2110, 2204, 2218
XceI RCATGY 6 cut(s) 136, 676, 969, 1010, 1289, 2049
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmiI GTMKAC 3 cut(s) 375, 976, 1601
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 7 cut(s) 617, 735, 1101, 1646, 2264, 2294, 2444
ZrmI AGTACT 1 cut(s) 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.