RLG00000034503

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016250
Physical Location & Seq
Forward (+)
43843765 .. 43847533
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034503

Sequence Viewer

Length: 2733 bp
ATGGAACAATCTTACATGCAATTGTCACAAAAATTCTATGAATCCATGAAAGCTTGTGCATCTCTAAGGTCGATCCCCATTGCCCGAAAACTCCATGGCCAACTCATTTCTGTAGGATTGGACTCTGCCATTTTCCTTCAGAACCATCTCTTGCATATGTATTCCCGTTGCAGCTTGATAGATGATGCTCGCCGGATTTTCTTCAGTATTCAACATCCTAATGTGTTTAGTTGGAATACAATGATTAGTGCGTTGGTAGACTTGGGTCACATGGGGGAGGCAGAGAAGTTGTTCAATGAAATGCCTGAGAGAGACTCCGTCTCTTGGACTACTATGATGTCTGGCCATTTTCATAATGGGCAACCTAAGGATGCAATTAAAGTGTTTGCTTCAATGGTATGGAATTGTGATGGTTTCTATGACCCATTTTCCTTCTCTTGCGCAATGAAGGCTTGTGGTAGTCTTGGTCACATTAAGTTGGCTCTTCAGTTGCATACTCTAGTGGAGAAATTAAATTTTGGAGGCAACATGGTTATTCAAAATTCTATAATTGACATGTACATCAAGTGTGGTGCACTGCGTTTGGCTGAGAGAATGTTTATGAGGATCCCTAATCCTAGTTTGTTTTGTTGGAACAGTATGATCTATGGCTGCTCTAAACTTTATGGGGTCAGAAGGGCTCTCCATATGTTCATTGAAATGCCTGAACGTGATTGTGTGTCTTGGAATACCATAATATCAATCTTTTCTCAACATGGTTTTGGGGTTGAGAGTCTTAGTATGTTTGTTGAGATGTGGAACCATGGTTTTAGACCAAATGCTATGATATATGCTACTATACTTAGTGCATGTGCAAGTATACATGATCTTGAATGGGGTAGCCATTTGCATGCTCGGATACTCCGTATGGAACCAAGTATGGATGTTTTTGCAGGTAGTGGGCTGATTGATATGTATGTGAAATGTGGACAGTTGCATCGTGCTAGGCAGGTGTTTGACAACATGACAGAACACAATGCAGTTTCTTGGACTTCTATGATTAGTGGAGCCATGCAGTTTGGGCTTGAAGATGAAGCTTTAGTACTGTTTAACCGAATGAGAAAATCTCCTATTGCCTTGGATGAGTTTACTCTTGCAACAGTTCTTGGGGTTTGTTCAGGCCATGAGCATGCTTGGGTTGGGGAGCAGCTCCATGGATATACAATCAAAGGTGGAATGATCTCCTCTATTCCTGTAGGGAATGCTCTTGTTACGATGTATGCAAAATGTGGAAACACTGATAAAGCCAGCCAAGCATTTGAGTTGATGCCTGCTAAAGATATAATATCATGGACAGCCATGATCACAGCATTCTCTCAAACTGGTAATGTTGAAAAATCCCGAGAGTATTTTGATAAAATGCCAGAGCGAAATGTCATAAGTTGGAACTCAATGTTAGGAACATATTTCCAAAATGGTTTATGGGAAGAAGGCCTTAAATTGTATACTCTTATGCGAAGGGTAGGGGTTAACCTGGATTGGATCACACTAGTAACTTCAATCAGTGCCTGTGCTGATTTGGCAATATTGAAACTTGGGCTGCAGATTATAGCTCAAGCTGAAAAATTAGGATTTGGTTCTAATGTTTCAGTCTTGAATAGCATTATTACTATGTATTCAAGATGTGGACGAATTATAGAAGCGAAAAGAGTGTTTGATTCAATATGTGATAAAAATTTGATTTCTTGGAATGCAATTATGGCTGGATATGCTCAAAATGGACAAGGTAGGAAGGTGATCGAGGTTTTTGAGAATATGTTGAAAATGGACTGCGCACCTGATCATATAAGCTATGTATCTGTTCTATCAGGTTGTGGCCATTCAGGGCTCGTAACAGAGGGGAAACACTACTTCAGTTCTATGACTGAAGATTTTGGCATCAATCCTACATGTGAACATTTTGCTTGTATAGTAGATCTACTTGGTCGGGCTGGGTTACTGAAGGAGGCCAGGAATTTGATCGATGCAATGCCCTTTAAGCCAAATGCTGCTATCTGGGGAGCTCTTCTTGGTGCTTGCCGGCTTCATCGCGATTATAATTTAGCAGAATTTGCAGCAAGAAATTTGCTTGAATTAGATTTAGATGATTCTGGCAGTTATGTCCTTCTAGCTAATACATATTCAGATTGTGGACAACTAGAAGCTTTTGCAGATGTAAGAAAACAGATGAGAAAGAAAGGAATAGAGAAAAATCCTGGATGTAGCTGGATAGAGGTTAATAATAGGGTACACGTGTTCACTGTAGATGACACTAATCATCCACAAATCAAGGACGTTTATAGAATGCTAGAGGAGATAGTCAAGAAGATAGAAGATACAGAATGCTATGTCAATCCAACTAATGCCGTTCGTTCTCAGTGCCATCACAGGAACTTATTGTGCGGGATGGACACCGGTTTCATCATTTCAAGGATGGATGTTGCTCTTGTGGAGACTACTGGTGACATGGGGATCTACAACCGGAGAACTCTGATAGAGTCAAGAACATGCATGTGCTTGATGGACATGACAAAATTATTTATGCATTGTTCAGGCCTCTGGGTCACCGTGCCTACTCAAGCTAATGGCTACTACTTCCTTAACAATGCTGGTCTTTCTGTTCAATTGGCTTTCCATTCTGGCTGTGCAAAAGTTGCAGTGATAGACATTGATTTCCATTATGGCAATGGGACTGCCGAGGTTCTATCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

911

Amino Acids

102.11

Weight (kDa)

6.36

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 72 - 101 4.4e-06 PPR repeat
PPR_2 PF13041 73 - 104 3.9e-08 PPR repeat family
PPR PF01535 76 - 104 2.7e-07 PPR repeat
PPR_2 PF13041 105 - 151 3.3e-06 PPR repeat family
PPR_2 PF13041 339 - 384 3.4e-06 PPR repeat family
PPR PF01535 442 - 472 3.3e-06 PPR repeat
PPR_2 PF13041 470 - 518 5.8e-08 PPR repeat family
PPR_2 PF13041 572 - 619 4.5e-11 PPR repeat family
PPR PF01535 574 - 604 7.8e-06 PPR repeat
E_motif PF20431 689 - 751 2e-19 E motif
Hist_deacetyl PF00850 865 - 908 9.4e-08 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00672 FvH4_3g26580
malus_domestica MD03G1153100.v1.1
prunus_persica Prupe.6G140100_v2.0.a1
pyrus_communis pycom03g10670
rosa_chinensis RchiOBHm_Chr5g0048221
rosa_laevigata RLG00000034503
rosa_multiflora Rmu_sc0001408.1_g000005
rosa_roxburghii Rroxscaffold_1G00033660
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316300 Rh5BG327000 Rh5CG353200 Rh5DG338100
rosa_wichuraiana Rw5G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2076
AarI CACCTGC 1 cut(s) 979
Acc16I TGCGCA 2 cut(s) 442, 1813
Acc36I ACCTGC 2 cut(s) 923, 979
AccI GTMKAC 3 cut(s) 258, 859, 1484
AccII CGCG 1 cut(s) 2070
AciI CCGC 1 cut(s) 2421
AclWI GGATC 5 cut(s) 67, 601, 614, 1529, 2498
AcoI YGGCCR 3 cut(s) 97, 343, 1855
AcsI RAATTY 7 cut(s) 32, 514, 541, 1714, 1993, 2087, 2101
AcuI CTGAAG 6 cut(s) 122, 187, 470, 1876, 1926, 2000
AcvI CACGTG 1 cut(s) 2272
AfaI GTAC 3 cut(s) 560, 1083, 2268
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 4 cut(s) 555, 1928, 2269, 2271
AgeI ACCGGT 1 cut(s) 2432
AhlI ACTAGT 1 cut(s) 1528
AjnI CCWGG 3 cut(s) 1512, 1988, 2233
Alw21I GWGCWC 2 cut(s) 577, 2044
Alw26I GTCTC 3 cut(s) 306, 325, 2465
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 5 cut(s) 67, 601, 614, 1529, 2498
AlwNI CAGNNNCTG 1 cut(s) 1548
Ama87I CYCGRG 1 cut(s) 1380
AoxI GGCC 7 cut(s) 97, 343, 1159, 1471, 1855, 1986, 2572
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 6 cut(s) 171, 651, 1186, 1579, 2027, 2093
ApoI RAATTY 7 cut(s) 32, 514, 541, 1714, 1993, 2087, 2101
AsiGI ACCGGT 1 cut(s) 2432
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 2 cut(s) 443, 1814
AsuHPI GGTGA 3 cut(s) 1786, 2492, 2575
AvaI CYCGRG 1 cut(s) 1380
AxyI CCTNAGG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 577
BaeI ACNNNNGTAYC 2 cut(s) 2258, 2291
BalI TGGCCA 3 cut(s) 99, 345, 1857
BamHI GGATCC 1 cut(s) 606
BanII GRGCYC 3 cut(s) 682, 1869, 2044
BarI GAAGNNNNNNTAC 2 cut(s) 1065, 1097
BbrPI CACGTG 1 cut(s) 2272
Bbv12I GWGCWC 2 cut(s) 577, 2044
BbvI GCAGC 6 cut(s) 183, 638, 1198, 1566, 2014, 2105
BccI CCATC 6 cut(s) 153, 404, 2409, 2419, 2446, 2533
BceAI ACGGC 1 cut(s) 2369
BciT130I CCWGG 3 cut(s) 1514, 1990, 2235
BciVI GTATCC 1 cut(s) 891
BclI TGATCA 2 cut(s) 1341, 1819
BcoDI GTCTC 3 cut(s) 306, 325, 2465
BcuI ACTAGT 1 cut(s) 1528
BfaI CTAG 7 cut(s) 500, 618, 984, 1529, 2147, 2177, 2327
BfmI CTRYAG 4 cut(s) 111, 1233, 1580, 2280
BfuAI ACCTGC 2 cut(s) 923, 979
BfuI GTATCC 1 cut(s) 891
BglII AGATCT 1 cut(s) 1954
BisI GCNGC 6 cut(s) 172, 652, 1187, 1580, 2028, 2094
BlsI GCNGC 6 cut(s) 173, 653, 1188, 1581, 2029, 2095
BmcAI AGTACT 1 cut(s) 1083
Bme1390I CCNGG 3 cut(s) 1514, 1990, 2235
BmeT110I CYCGRG 1 cut(s) 1380
BmiI GGNNCC 4 cut(s) 608, 800, 912, 1048
BmrFI CCNGG 3 cut(s) 1514, 1990, 2235
BmsI GCATC 7 cut(s) 68, 175, 361, 985, 1296, 1926, 1993
BoxI GACNNNNGTC 1 cut(s) 264
BplI GAGNNNNNCTC 4 cut(s) 299, 331, 1090, 1122
BpuEI CTTGAG 2 cut(s) 1578, 2580
Bsa29I ATCGAT 1 cut(s) 2001
BsaAI YACGTR 1 cut(s) 2272
BsaJI CCNNGG 5 cut(s) 94, 802, 1116, 1192, 2715
BsaWI WCCGGW 2 cut(s) 2432, 2499
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 2 cut(s) 2058, 2432
Bse1I ACTGG 2 cut(s) 1366, 2482
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 4 cut(s) 78, 450, 2013, 2710
BseBI CCWGG 3 cut(s) 1514, 1990, 2235
BseCI ATCGAT 1 cut(s) 2001
BseDI CCNNGG 5 cut(s) 94, 802, 1116, 1192, 2715
BseGI GGATG 9 cut(s) 214, 376, 928, 1126, 2243, 2296, 2430, 2457, 2461
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 4 cut(s) 78, 450, 2013, 2710
BseMII CTCAG 3 cut(s) 297, 579, 2408
BseNI ACTGG 2 cut(s) 1366, 2482
BseRI GAGGAG 2 cut(s) 1213, 2345
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 6 cut(s) 183, 638, 1198, 1566, 2014, 2105
BseYI CCCAGC 1 cut(s) 1970
Bsh1236I CGCG 1 cut(s) 2070
BshFI GGCC 7 cut(s) 99, 345, 1161, 1473, 1857, 1988, 2574
BshTI ACCGGT 1 cut(s) 2432
BshVI ATCGAT 1 cut(s) 2001
BsiHKAI GWGCWC 2 cut(s) 577, 2044
BsiHKCI CYCGRG 1 cut(s) 1380
BsiSI CCGG 4 cut(s) 193, 2059, 2433, 2500
BslFI GGGAC 1 cut(s) 2722
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 3 cut(s) 306, 325, 2465
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 2722
BsmI GAATGC 5 cut(s) 1246, 1349, 1735, 2328, 2366
BsnI GGCC 7 cut(s) 99, 345, 1161, 1473, 1857, 1988, 2574
BsoBI CYCGRG 1 cut(s) 1380
Bsp1286I GDGCHC 4 cut(s) 577, 682, 1869, 2044
Bsp1407I TGTACA 1 cut(s) 558
Bsp19I CCATGG 3 cut(s) 94, 802, 1192
Bsp68I TCGCGA 1 cut(s) 2070
BspACI CCGC 1 cut(s) 2421
BspANI GGCC 7 cut(s) 99, 345, 1161, 1473, 1857, 1988, 2574
BspCNI CTCAG 3 cut(s) 298, 580, 2407
BspDI ATCGAT 1 cut(s) 2001
BspFNI CGCG 1 cut(s) 2070
BspLI GGNNCC 4 cut(s) 608, 800, 912, 1048
BspMAI CTGCAG 1 cut(s) 1584
BspMI ACCTGC 2 cut(s) 923, 979
BspPI GGATC 5 cut(s) 67, 601, 614, 1529, 2498
BspQI GCTCTTC 2 cut(s) 489, 2049
BsrDI GCAATG 4 cut(s) 78, 450, 2013, 2710
BsrFI RCCGGY 2 cut(s) 2058, 2432
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 2 cut(s) 1366, 2482
BssAI RCCGGY 2 cut(s) 2058, 2432
BssECI CCNNGG 5 cut(s) 94, 802, 1116, 1192, 2715
BssNAI GTATAC 2 cut(s) 860, 1485
BssT1I CCWWGG 4 cut(s) 94, 802, 1116, 1192
Bst1107I GTATAC 2 cut(s) 860, 1485
Bst2UI CCWGG 3 cut(s) 1514, 1990, 2235
Bst4CI ACNGT 6 cut(s) 638, 972, 1086, 1141, 2281, 2587
Bst6I CTCTTC 2 cut(s) 489, 2049
BstAPI GCANNNNNTGC 2 cut(s) 2090, 2672
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 2272
BstC8I GCNNGC 7 cut(s) 190, 891, 1170, 1288, 1311, 2056, 2060
BstDEI CTNAG 7 cut(s) 65, 306, 366, 588, 776, 842, 2394
BstDSI CCRYGG 3 cut(s) 94, 802, 1192
BstEII GGTNACC 1 cut(s) 2581
BstF5I GGATG 9 cut(s) 214, 376, 928, 1126, 2243, 2296, 2430, 2457, 2461
BstFNI CGCG 1 cut(s) 2070
BstHHI GCGC 2 cut(s) 443, 1814
BstMAI GTCTC 3 cut(s) 306, 325, 2465
BstMWI GCNNNNNNNGC 9 cut(s) 449, 1060, 1292, 1559, 1739, 1748, 2017, 2090, 2672
BstNI CCWGG 3 cut(s) 1514, 1990, 2235
BstNSI RCATGY 8 cut(s) 19, 559, 852, 893, 1172, 1932, 2529, 2533
BstPAI GACNNNNGTC 1 cut(s) 264
BstPI GGTNACC 1 cut(s) 2581
BstSCI CCNGG 3 cut(s) 1512, 1988, 2233
BstSFI CTRYAG 4 cut(s) 111, 1233, 1580, 2280
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 1 cut(s) 2070
BstV1I GCAGC 6 cut(s) 183, 638, 1198, 1566, 2014, 2105
BstX2I RGATCY 3 cut(s) 606, 1954, 2490
BstYI RGATCY 3 cut(s) 606, 1954, 2490
BstZ17I GTATAC 2 cut(s) 860, 1485
Bsu15I ATCGAT 1 cut(s) 2001
Bsu36I CCTNAGG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 7 cut(s) 99, 345, 1161, 1473, 1857, 1988, 2574
BsuTUI ATCGAT 1 cut(s) 2001
BtgI CCRYGG 3 cut(s) 94, 802, 1192
BtgZI GCGATG 1 cut(s) 2051
BtsCI GGATG 9 cut(s) 214, 376, 928, 1126, 2243, 2296, 2430, 2457, 2461
BtsI GCAGTG 2 cut(s) 575, 2682
BtsIMutI CAGTG 6 cut(s) 575, 1275, 1549, 2277, 2402, 2682
BtuMI TCGCGA 1 cut(s) 2070
BveI ACCTGC 2 cut(s) 923, 979
Cac8I GCNNGC 7 cut(s) 190, 891, 1170, 1288, 1311, 2056, 2060
CaiI CAGNNNCTG 1 cut(s) 1548
CfoI GCGC 2 cut(s) 443, 1814
Cfr10I RCCGGY 2 cut(s) 2058, 2432
ClaI ATCGAT 1 cut(s) 2001
Csp6I GTAC 3 cut(s) 559, 1082, 2267
CspAI ACCGGT 1 cut(s) 2432
CviQI GTAC 3 cut(s) 559, 1082, 2267
DdeI CTNAG 7 cut(s) 65, 306, 366, 588, 776, 842, 2394
EaeI YGGCCR 3 cut(s) 97, 343, 1855
Eam1104I CTCTTC 2 cut(s) 489, 2049
EarI CTCTTC 2 cut(s) 489, 2049
Ecl136II GAGCTC 1 cut(s) 2042
Eco130I CCWWGG 4 cut(s) 94, 802, 1116, 1192
Eco147I AGGCCT 2 cut(s) 1473, 2574
Eco24I GRGCYC 3 cut(s) 682, 1869, 2044
Eco53kI GAGCTC 1 cut(s) 2042
Eco57I CTGAAG 6 cut(s) 122, 187, 470, 1876, 1926, 2000
Eco72I CACGTG 1 cut(s) 2272
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 1380
Eco91I GGTNACC 1 cut(s) 2581
EcoICRI GAGCTC 1 cut(s) 2042
EcoO65I GGTNACC 1 cut(s) 2581
EcoRII CCWGG 3 cut(s) 1512, 1988, 2233
EcoT14I CCWWGG 4 cut(s) 94, 802, 1116, 1192
EcoT22I ATGCAT 2 cut(s) 2531, 2565
EcoT38I GRGCYC 3 cut(s) 682, 1869, 2044
ErhI CCWWGG 4 cut(s) 94, 802, 1116, 1192
Esp3I CGTCTC 1 cut(s) 325
FalI AAGNNNNNCTT 2 cut(s) 1458, 1490
FaqI GGGAC 1 cut(s) 2722
FauI CCCGC 1 cut(s) 2414
FauNDI CATATG 2 cut(s) 156, 687
FbaI TGATCA 2 cut(s) 1341, 1819
FblI GTMKAC 3 cut(s) 258, 859, 1484
Fnu4HI GCNGC 6 cut(s) 172, 652, 1187, 1580, 2028, 2094
FokI GGATG 9 cut(s) 201, 383, 935, 1133, 2250, 2283, 2437, 2464, 2468
FriOI GRGCYC 3 cut(s) 682, 1869, 2044
Fsp4HI GCNGC 6 cut(s) 172, 652, 1187, 1580, 2028, 2094
FspBI CTAG 7 cut(s) 500, 618, 984, 1529, 2147, 2177, 2327
FspI TGCGCA 2 cut(s) 442, 1813
GlaI GCGC 2 cut(s) 442, 1813
GluI GCNGC 6 cut(s) 172, 652, 1187, 1580, 2028, 2094
GsaI CCCAGC 1 cut(s) 1974
HaeIII GGCC 7 cut(s) 99, 345, 1161, 1473, 1857, 1988, 2574
HapII CCGG 4 cut(s) 193, 2059, 2433, 2500
HhaI GCGC 2 cut(s) 443, 1814
Hin6I GCGC 2 cut(s) 441, 1812
HinP1I GCGC 2 cut(s) 441, 1812
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
HindIII AAGCTT 3 cut(s) 51, 1074, 2181
HinfI GANTC 7 cut(s) 41, 122, 314, 772, 1697, 2126, 2516
HpaI GTTAAC 1 cut(s) 1510
HpaII CCGG 4 cut(s) 193, 2059, 2433, 2500
HphI GGTGA 3 cut(s) 1786, 2492, 2575
Hpy188I TCNGA 5 cut(s) 141, 674, 897, 2164, 2511
Hpy188III TCNNGA 7 cut(s) 869, 1380, 1633, 1659, 2069, 2341, 2520
HpyAV CCTTC 9 cut(s) 146, 442, 442, 669, 1463, 1491, 1765, 1975, 2153
HpyCH4III ACNGT 6 cut(s) 638, 972, 1086, 1141, 2281, 2587
HpyCH4IV ACGT 3 cut(s) 709, 2271, 2313
HpyF10VI GCNNNNNNNGC 9 cut(s) 449, 1060, 1292, 1559, 1739, 1748, 2017, 2090, 2672
HpyF3I CTNAG 7 cut(s) 65, 306, 366, 588, 776, 842, 2394
HpySE526I ACGT 3 cut(s) 709, 2271, 2313
HspAI GCGC 2 cut(s) 441, 1812
KroI GCCGGC 1 cut(s) 2058
KroNI GCCGGC 1 cut(s) 2060
Ksp22I TGATCA 2 cut(s) 1341, 1819
KspAI GTTAAC 1 cut(s) 1510
LguI GCTCTTC 2 cut(s) 489, 2049
LmnI GCTCC 4 cut(s) 1046, 1183, 1194, 2039
Lsp1109I GCAGC 6 cut(s) 183, 638, 1198, 1566, 2014, 2105
LweI GCATC 7 cut(s) 68, 175, 361, 985, 1296, 1926, 1993
MaeI CTAG 7 cut(s) 500, 618, 984, 1529, 2147, 2177, 2327
MaeII ACGT 3 cut(s) 709, 2271, 2313
MaeIII GTNAC 9 cut(s) 24, 266, 467, 1249, 1531, 1870, 1974, 2480, 2581
MboII GAAGA 8 cut(s) 193, 476, 1079, 1478, 1919, 2036, 2356, 2363
MfeI CAATTG 2 cut(s) 20, 2642
MflI RGATCY 3 cut(s) 606, 1954, 2490
MhlI GDGCHC 4 cut(s) 577, 682, 1869, 2044
MlsI TGGCCA 3 cut(s) 99, 345, 1857
MluNI TGGCCA 3 cut(s) 99, 345, 1857
MlyI GAGTC 4 cut(s) 116, 308, 781, 2525
MmeI TCCRAC 4 cut(s) 212, 611, 1403, 2399
Mox20I TGGCCA 3 cut(s) 99, 345, 1857
Mph1103I ATGCAT 2 cut(s) 2531, 2565
MroNI GCCGGC 1 cut(s) 2058
MroXI GAANNNNTTC 1 cut(s) 290
MscI TGGCCA 3 cut(s) 99, 345, 1857
MseI TTAA 9 cut(s) 378, 474, 512, 1089, 1476, 1509, 2016, 2256, 2619
MslI CAYNNNNRTG 5 cut(s) 219, 698, 888, 1167, 2530
Msp20I TGGCCA 3 cut(s) 99, 345, 1857
MspI CCGG 4 cut(s) 193, 2059, 2433, 2500
MspR9I CCNGG 3 cut(s) 1514, 1990, 2235
MunI CAATTG 2 cut(s) 20, 2642
Mva1269I GAATGC 5 cut(s) 1246, 1349, 1735, 2328, 2366
MvaI CCWGG 3 cut(s) 1514, 1990, 2235
MvnI CGCG 1 cut(s) 2070
MwoI GCNNNNNNNGC 9 cut(s) 449, 1060, 1292, 1559, 1739, 1748, 2017, 2090, 2672
NaeI GCCGGC 1 cut(s) 2060
NcoI CCATGG 3 cut(s) 94, 802, 1192
NdeI CATATG 2 cut(s) 156, 687
NgoMIV GCCGGC 1 cut(s) 2058
NlaIV GGNNCC 4 cut(s) 608, 800, 912, 1048
NmuCI GTSAC 5 cut(s) 24, 266, 467, 2480, 2581
NruI TCGCGA 1 cut(s) 2070
NsbI TGCGCA 2 cut(s) 442, 1813
NsiI ATGCAT 2 cut(s) 2531, 2565
NspI RCATGY 8 cut(s) 19, 559, 852, 893, 1172, 1932, 2529, 2533
PaeI GCATGC 2 cut(s) 893, 1172
PaqCI CACCTGC 1 cut(s) 979
PceI AGGCCT 2 cut(s) 1473, 2574
PciI ACATGT 2 cut(s) 555, 1928
PciSI GCTCTTC 2 cut(s) 489, 2049
PcsI WCGNNNNNNNCGW 1 cut(s) 901
PctI GAATGC 5 cut(s) 1246, 1349, 1735, 2328, 2366
PdiI GCCGGC 1 cut(s) 2060
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 41, 1697, 2126
PflFI GACNNNGTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 2233
PinAI ACCGGT 1 cut(s) 2432
PkrI GCNGC 6 cut(s) 173, 653, 1188, 1581, 2029, 2095
PleI GAGTC 4 cut(s) 116, 308, 780, 2524
PmaCI CACGTG 1 cut(s) 2272
PmlI CACGTG 1 cut(s) 2272
PpsI GAGTC 4 cut(s) 116, 308, 780, 2524
Ppu21I YACGTR 1 cut(s) 2272
PscI ACATGT 2 cut(s) 555, 1928
PshAI GACNNNNGTC 1 cut(s) 264
PsiI TTATAA 1 cut(s) 2076
Psp124BI GAGCTC 1 cut(s) 2044
Psp6I CCWGG 3 cut(s) 1512, 1988, 2233
PspCI CACGTG 1 cut(s) 2272
PspEI GGTNACC 1 cut(s) 2581
PspFI CCCAGC 1 cut(s) 1970
PspGI CCWGG 3 cut(s) 1512, 1988, 2233
PspN4I GGNNCC 4 cut(s) 608, 800, 912, 1048
PstI CTGCAG 1 cut(s) 1584
PstNI CAGNNNCTG 1 cut(s) 1548
PsuI RGATCY 3 cut(s) 606, 1954, 2490
PsyI GACNNNGTC 1 cut(s) 317
RruI TCGCGA 1 cut(s) 2070
RsaI GTAC 3 cut(s) 560, 1083, 2268
RsaNI GTAC 3 cut(s) 559, 1082, 2267
RseI CAYNNNNRTG 5 cut(s) 219, 698, 888, 1167, 2530
SacI GAGCTC 1 cut(s) 2044
SapI GCTCTTC 2 cut(s) 489, 2049
SaqAI TTAA 9 cut(s) 378, 474, 512, 1089, 1476, 1509, 2016, 2256, 2619
SatI GCNGC 6 cut(s) 172, 652, 1187, 1580, 2028, 2094
ScaI AGTACT 1 cut(s) 1083
SchI GAGTC 4 cut(s) 116, 308, 781, 2525
ScrFI CCNGG 3 cut(s) 1514, 1990, 2235
SduI GDGCHC 4 cut(s) 577, 682, 1869, 2044
SfaNI GCATC 7 cut(s) 68, 175, 361, 985, 1296, 1926, 1993
SfcI CTRYAG 4 cut(s) 111, 1233, 1580, 2280
SmiMI CAYNNNNRTG 5 cut(s) 219, 698, 888, 1167, 2530
SmlI CTYRAG 2 cut(s) 1593, 2595
SmoI CTYRAG 2 cut(s) 1593, 2595
SpeI ACTAGT 1 cut(s) 1528
SphI GCATGC 2 cut(s) 893, 1172
SseBI AGGCCT 2 cut(s) 1473, 2574
SsiI CCGC 1 cut(s) 2421
SspI AATATT 1 cut(s) 1566
SspMI CTAG 7 cut(s) 500, 618, 984, 1529, 2147, 2177, 2327
SstI GAGCTC 1 cut(s) 2044
StuI AGGCCT 2 cut(s) 1473, 2574
StyD4I CCNGG 3 cut(s) 1512, 1988, 2233
StyI CCWWGG 4 cut(s) 94, 802, 1116, 1192
TaaI ACNGT 6 cut(s) 638, 972, 1086, 1141, 2281, 2587
TaiI ACGT 3 cut(s) 712, 2274, 2316
TaqI TCGA 3 cut(s) 71, 1779, 2001
TatI WGTACW 2 cut(s) 558, 1081
TfiI GAWTC 3 cut(s) 41, 1697, 2126
Tru1I TTAA 9 cut(s) 378, 474, 512, 1089, 1476, 1509, 2016, 2256, 2619
Tru9I TTAA 9 cut(s) 378, 474, 512, 1089, 1476, 1509, 2016, 2256, 2619
TscAI CASTG 6 cut(s) 582, 1282, 1549, 2284, 2402, 2682
TseFI GTSAC 5 cut(s) 24, 266, 467, 2480, 2581
TseI GCWGC 6 cut(s) 171, 651, 1186, 1579, 2027, 2093
Tsp45I GTSAC 5 cut(s) 24, 266, 467, 2480, 2581
TspDTI ATGAA 9 cut(s) 54, 62, 312, 341, 461, 682, 1086, 2054, 2428
TspGWI ACGGA 3 cut(s) 307, 893, 2716
TspRI CASTG 6 cut(s) 582, 1282, 1549, 2284, 2402, 2682
Tth111I GACNNNGTC 1 cut(s) 317
VneI GTGCAC 1 cut(s) 573
XapI RAATTY 7 cut(s) 32, 514, 541, 1714, 1993, 2087, 2101
XceI RCATGY 8 cut(s) 19, 559, 852, 893, 1172, 1932, 2529, 2533
XcmI CCANNNNNNNNNTGG 2 cut(s) 353, 2702
XmiI GTMKAC 3 cut(s) 258, 859, 1484
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 7 cut(s) 500, 618, 984, 1529, 2147, 2177, 2327
ZrmI AGTACT 1 cut(s) 1083
Zsp2I ATGCAT 2 cut(s) 2531, 2565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.