Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g00672 FvH4_3g26580 |
| malus_domestica | MD03G1153100.v1.1 |
| prunus_persica | Prupe.6G140100_v2.0.a1 |
| pyrus_communis | pycom03g10670 |
| rosa_chinensis | RchiOBHm_Chr5g0048221 |
| rosa_laevigata | RLG00000034503 |
| rosa_multiflora | Rmu_sc0001408.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00033660 |
| rosa_rugosa | Rorug05G0237300 |
| rosa_samantha | Rh5AG316300 Rh5BG327000 Rh5CG353200 Rh5DG338100 |
| rosa_wichuraiana | Rw5G029650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1099 |
| Acc36I | ACCTGC | 2 cut(s) | 1043, 1099 |
| Acc65I | GGTACC | 1 cut(s) | 998 |
| AccB1I | GGYRCC | 1 cut(s) | 998 |
| AccI | GTMKAC | 3 cut(s) | 300, 2073, 2403 |
| AccII | CGCG | 1 cut(s) | 2190 |
| AciI | CCGC | 1 cut(s) | 2420 |
| AclWI | GGATC | 2 cut(s) | 721, 734 |
| AcoI | YGGCCR | 1 cut(s) | 217 |
| AcsI | RAATTY | 7 cut(s) | 406, 661, 937, 1360, 1546, 1834, 2221 |
| AcuI | CTGAAG | 1 cut(s) | 590 |
| AcyI | GRCGYC | 1 cut(s) | 2106 |
| AfaI | GTAC | 5 cut(s) | 281, 680, 960, 1000, 2388 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1146, 2157 |
| AflII | CTTAAG | 1 cut(s) | 2135 |
| AflIII | ACRYGT | 2 cut(s) | 2048, 2389 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 838 |
| AhlI | ACTAGT | 1 cut(s) | 55 |
| AjnI | CCWGG | 2 cut(s) | 294, 1986 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 910, 942 |
| Alw21I | GWGCWC | 1 cut(s) | 704 |
| Alw26I | GTCTC | 3 cut(s) | 73, 485, 899 |
| AlwI | GGATC | 2 cut(s) | 721, 734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1668 |
| Ama87I | CYCGRG | 1 cut(s) | 1500 |
| AoxI | GGCC | 6 cut(s) | 217, 1279, 1338, 1591, 1984, 2160 |
| ApeKI | GCWGC | 1 cut(s) | 2147 |
| ApoI | RAATTY | 7 cut(s) | 406, 661, 937, 1360, 1546, 1834, 2221 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 410, 1035 |
| Asp718I | GGTACC | 1 cut(s) | 998 |
| AspLEI | GCGC | 1 cut(s) | 2174 |
| AspS9I | GGNCC | 2 cut(s) | 1984, 2160 |
| AsuC2I | CCSGG | 3 cut(s) | 1180, 1412, 2355 |
| AsuHPI | GGTGA | 2 cut(s) | 1636, 1892 |
| AsuII | TTCGAA | 1 cut(s) | 414 |
| AvaI | CYCGRG | 1 cut(s) | 1500 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2378, 2411 |
| BalI | TGGCCA | 1 cut(s) | 219 |
| BamHI | GGATCC | 1 cut(s) | 726 |
| BanI | GGYRCC | 1 cut(s) | 998 |
| BanII | GRGCYC | 3 cut(s) | 704, 802, 1185 |
| BbsI | GAAGAC | 1 cut(s) | 1194 |
| Bbv12I | GWGCWC | 1 cut(s) | 704 |
| BbvI | GCAGC | 1 cut(s) | 2134 |
| BccI | CCATC | 3 cut(s) | 273, 388, 1330 |
| BceAI | ACGGC | 1 cut(s) | 1124 |
| BciT130I | CCWGG | 2 cut(s) | 296, 1988 |
| BciVI | GTATCC | 1 cut(s) | 744 |
| BclI | TGATCA | 3 cut(s) | 1158, 1461, 1939 |
| BcnI | CCSGG | 3 cut(s) | 1180, 1412, 2355 |
| BcoDI | GTCTC | 3 cut(s) | 73, 485, 899 |
| BcuI | ACTAGT | 1 cut(s) | 55 |
| BfaI | CTAG | 4 cut(s) | 56, 930, 1727, 2267 |
| BfmI | CTRYAG | 2 cut(s) | 231, 2400 |
| BfoI | RGCGCY | 1 cut(s) | 2175 |
| BfrI | CTTAAG | 1 cut(s) | 2135 |
| BfuAI | ACCTGC | 2 cut(s) | 1043, 1099 |
| BfuI | GTATCC | 1 cut(s) | 744 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1983 |
| BisI | GCNGC | 1 cut(s) | 2148 |
| BlsI | GCNGC | 1 cut(s) | 2149 |
| BmcAI | AGTACT | 1 cut(s) | 960 |
| Bme1390I | CCNGG | 5 cut(s) | 296, 1180, 1412, 1988, 2355 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 838 |
| BmeT110I | CYCGRG | 1 cut(s) | 1500 |
| BmgT120I | GGNCC | 2 cut(s) | 1984, 2160 |
| BmiI | GGNNCC | 6 cut(s) | 728, 920, 1000, 1032, 1227, 2161 |
| BmrFI | CCNGG | 5 cut(s) | 296, 1180, 1412, 1988, 2355 |
| BmrI | ACTGGG | 1 cut(s) | 280 |
| BmsI | GCATC | 6 cut(s) | 40, 188, 295, 394, 1416, 2046 |
| BmuI | ACTGGG | 1 cut(s) | 280 |
| BpiI | GAAGAC | 1 cut(s) | 1194 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1210, 1242 |
| BpmI | CTGGAG | 1 cut(s) | 242 |
| Bpu14I | TTCGAA | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 2 cut(s) | 170, 1698 |
| BpuMI | CCSGG | 3 cut(s) | 1180, 1412, 2355 |
| BsaAI | YACGTR | 1 cut(s) | 2277 |
| BsaBI | GATNNNNATC | 2 cut(s) | 384, 860 |
| BsaHI | GRCGYC | 1 cut(s) | 2106 |
| BsaJI | CCNNGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1146, 2157 |
| Bse1I | ACTGG | 3 cut(s) | 286, 1430, 2451 |
| Bse3DI | GCAATG | 2 cut(s) | 198, 1141 |
| Bse8I | GATNNNNATC | 2 cut(s) | 384, 860 |
| BseBI | CCWGG | 2 cut(s) | 296, 1988 |
| BseDI | CCNNGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| BseGI | GGATG | 6 cut(s) | 396, 1020, 1246, 1341, 2416, 2455 |
| BseJI | GATNNNNATC | 2 cut(s) | 384, 860 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1146, 2157 |
| BseMI | GCAATG | 2 cut(s) | 198, 1141 |
| BseMII | CTCAG | 2 cut(s) | 699, 910 |
| BseNI | ACTGG | 3 cut(s) | 286, 1430, 2451 |
| BseXI | GCAGC | 1 cut(s) | 2134 |
| BseYI | CCCAGC | 2 cut(s) | 1331, 2090 |
| BsgI | GTGCAG | 1 cut(s) | 1193 |
| Bsh1236I | CGCG | 1 cut(s) | 2190 |
| BshFI | GGCC | 6 cut(s) | 219, 1281, 1340, 1593, 1986, 2162 |
| BshNI | GGYRCC | 1 cut(s) | 998 |
| BsiHKAI | GWGCWC | 1 cut(s) | 704 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1500 |
| BsiSI | CCGG | 3 cut(s) | 1179, 1411, 2355 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1146, 2157 |
| BsmAI | GTCTC | 3 cut(s) | 73, 485, 899 |
| BsmBI | CGTCTC | 1 cut(s) | 485 |
| BsmI | GAATGC | 2 cut(s) | 1415, 1855 |
| BsnI | GGCC | 6 cut(s) | 219, 1281, 1340, 1593, 1986, 2162 |
| BsoBI | CYCGRG | 1 cut(s) | 1500 |
| Bsp119I | TTCGAA | 1 cut(s) | 414 |
| Bsp1286I | GDGCHC | 3 cut(s) | 704, 802, 1185 |
| Bsp1407I | TGTACA | 1 cut(s) | 678 |
| Bsp143I | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| Bsp19I | CCATGG | 2 cut(s) | 214, 1312 |
| Bsp68I | TCGCGA | 1 cut(s) | 2190 |
| BspACI | CCGC | 1 cut(s) | 2420 |
| BspANI | GGCC | 6 cut(s) | 219, 1281, 1340, 1593, 1986, 2162 |
| BspCNI | CTCAG | 2 cut(s) | 700, 909 |
| BspFNI | CGCG | 1 cut(s) | 2190 |
| BspLI | GGNNCC | 6 cut(s) | 728, 920, 1000, 1032, 1227, 2161 |
| BspMI | ACCTGC | 2 cut(s) | 1043, 1099 |
| BspPI | GGATC | 2 cut(s) | 721, 734 |
| BspQI | GCTCTTC | 2 cut(s) | 609, 807 |
| BspT104I | TTCGAA | 1 cut(s) | 414 |
| BspT107I | GGYRCC | 1 cut(s) | 998 |
| BspTI | CTTAAG | 1 cut(s) | 2135 |
| BsrDI | GCAATG | 2 cut(s) | 198, 1141 |
| BsrGI | TGTACA | 1 cut(s) | 678 |
| BsrI | ACTGG | 3 cut(s) | 286, 1430, 2451 |
| BssECI | CCNNGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| BssMI | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| BssNI | GRCGYC | 1 cut(s) | 2106 |
| BssT1I | CCWWGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| Bst2UI | CCWGG | 2 cut(s) | 296, 1988 |
| Bst4CI | ACNGT | 6 cut(s) | 527, 758, 836, 958, 1261, 2401 |
| Bst6I | CTCTTC | 3 cut(s) | 609, 807, 1348 |
| BstACI | GRCGYC | 1 cut(s) | 2106 |
| BstAFI | CTTAAG | 1 cut(s) | 2135 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1868, 2210 |
| BstAUI | TGTACA | 1 cut(s) | 678 |
| BstBAI | YACGTR | 1 cut(s) | 2277 |
| BstBI | TTCGAA | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 4 cut(s) | 15, 976, 1011, 2065 |
| BstDEI | CTNAG | 5 cut(s) | 708, 896, 962, 1648, 2498 |
| BstDSI | CCRYGG | 2 cut(s) | 214, 1312 |
| BstEII | GGTNACC | 1 cut(s) | 1642 |
| BstF5I | GGATG | 6 cut(s) | 396, 1020, 1246, 1341, 2416, 2455 |
| BstFNI | CGCG | 1 cut(s) | 2190 |
| BstH2I | RGCGCY | 1 cut(s) | 2175 |
| BstHHI | GCGC | 1 cut(s) | 2174 |
| BstKTI | GATC | 5 cut(s) | 729, 988, 1161, 1464, 1942 |
| BstMAI | GTCTC | 3 cut(s) | 73, 485, 899 |
| BstMBI | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1180, 1337, 1412, 1859, 1868, 1983, 2137, 2210 |
| BstNI | CCWGG | 2 cut(s) | 296, 1988 |
| BstNSI | RCATGY | 4 cut(s) | 972, 1013, 2052, 2393 |
| BstPI | GGTNACC | 1 cut(s) | 1642 |
| BstSCI | CCNGG | 5 cut(s) | 294, 1178, 1410, 1986, 2353 |
| BstSFI | CTRYAG | 2 cut(s) | 231, 2400 |
| BstSNI | TACGTA | 1 cut(s) | 2277 |
| BstUI | CGCG | 1 cut(s) | 2190 |
| BstV1I | GCAGC | 1 cut(s) | 2134 |
| BstV2I | GAAGAC | 1 cut(s) | 1194 |
| BstX2I | RGATCY | 1 cut(s) | 726 |
| BstYI | RGATCY | 1 cut(s) | 726 |
| BsuI | GTATCC | 1 cut(s) | 744 |
| BsuRI | GGCC | 6 cut(s) | 219, 1281, 1340, 1593, 1986, 2162 |
| BtgI | CCRYGG | 2 cut(s) | 214, 1312 |
| BtgZI | GCGATG | 2 cut(s) | 1472, 2171 |
| BtsCI | GGATG | 6 cut(s) | 396, 1020, 1246, 1341, 2416, 2455 |
| BtsI | GCAGTG | 1 cut(s) | 2220 |
| BtsIMutI | CAGTG | 5 cut(s) | 293, 1168, 1669, 2220, 2397 |
| BtuMI | TCGCGA | 1 cut(s) | 2190 |
| BveI | ACCTGC | 2 cut(s) | 1043, 1099 |
| Cac8I | GCNNGC | 4 cut(s) | 15, 976, 1011, 2065 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1668 |
| CfoI | GCGC | 1 cut(s) | 2174 |
| Cfr13I | GGNCC | 2 cut(s) | 1984, 2160 |
| CseI | GACGC | 1 cut(s) | 2114 |
| Csp6I | GTAC | 5 cut(s) | 280, 679, 959, 999, 2387 |
| CviQI | GTAC | 5 cut(s) | 280, 679, 959, 999, 2387 |
| DdeI | CTNAG | 5 cut(s) | 708, 896, 962, 1648, 2498 |
| DpnI | GATC | 5 cut(s) | 728, 987, 1160, 1463, 1941 |
| DpnII | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| DraI | TTTAAA | 1 cut(s) | 1210 |
| DriI | GACNNNNNGTC | 1 cut(s) | 838 |
| EaeI | YGGCCR | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 3 cut(s) | 609, 807, 1348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 838 |
| EarI | CTCTTC | 3 cut(s) | 609, 807, 1348 |
| Ecl136II | GAGCTC | 1 cut(s) | 702 |
| Eco105I | TACGTA | 1 cut(s) | 2277 |
| Eco130I | CCWWGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| Eco147I | AGGCCT | 1 cut(s) | 1593 |
| Eco24I | GRGCYC | 3 cut(s) | 704, 802, 1185 |
| Eco53kI | GAGCTC | 1 cut(s) | 702 |
| Eco57I | CTGAAG | 1 cut(s) | 590 |
| Eco88I | CYCGRG | 1 cut(s) | 1500 |
| Eco91I | GGTNACC | 1 cut(s) | 1642 |
| EcoICRI | GAGCTC | 1 cut(s) | 702 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2160 |
| EcoO65I | GGTNACC | 1 cut(s) | 1642 |
| EcoRI | GAATTC | 2 cut(s) | 1360, 1546 |
| EcoRII | CCWGG | 2 cut(s) | 294, 1986 |
| EcoT14I | CCWWGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| EcoT38I | GRGCYC | 3 cut(s) | 704, 802, 1185 |
| ErhI | CCWWGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| Esp3I | CGTCTC | 1 cut(s) | 485 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 69, 101, 87, 119 |
| FauNDI | CATATG | 2 cut(s) | 276, 2153 |
| FbaI | TGATCA | 3 cut(s) | 1158, 1461, 1939 |
| FblI | GTMKAC | 3 cut(s) | 300, 2073, 2403 |
| Fnu4HI | GCNGC | 1 cut(s) | 2148 |
| FokI | GGATG | 6 cut(s) | 403, 1007, 1253, 1348, 2403, 2462 |
| FriOI | GRGCYC | 3 cut(s) | 704, 802, 1185 |
| Fsp4HI | GCNGC | 1 cut(s) | 2148 |
| FspBI | CTAG | 4 cut(s) | 56, 930, 1727, 2267 |
| GlaI | GCGC | 1 cut(s) | 2173 |
| GluI | GCNGC | 1 cut(s) | 2148 |
| GsaI | CCCAGC | 2 cut(s) | 1335, 2094 |
| GsuI | CTGGAG | 1 cut(s) | 242 |
| HaeII | RGCGCY | 1 cut(s) | 2175 |
| HaeIII | GGCC | 6 cut(s) | 219, 1281, 1340, 1593, 1986, 2162 |
| HapII | CCGG | 3 cut(s) | 1179, 1411, 2355 |
| HgaI | GACGC | 1 cut(s) | 2114 |
| HhaI | GCGC | 1 cut(s) | 2174 |
| Hin1I | GRCGYC | 1 cut(s) | 2106 |
| Hin6I | GCGC | 1 cut(s) | 2172 |
| HinP1I | GCGC | 1 cut(s) | 2172 |
| HindIII | AAGCTT | 2 cut(s) | 1194, 2301 |
| HinfI | GANTC | 8 cut(s) | 242, 380, 434, 655, 892, 2192, 2246, 2285 |
| HpaII | CCGG | 3 cut(s) | 1179, 1411, 2355 |
| HphI | GGTGA | 2 cut(s) | 1636, 1892 |
| Hpy166II | GTNNAC | 6 cut(s) | 301, 1088, 1934, 2074, 2397, 2404 |
| Hpy188I | TCNGA | 7 cut(s) | 390, 522, 541, 738, 1675, 1828, 2284 |
| Hpy8I | GTNNAC | 6 cut(s) | 301, 1088, 1934, 2074, 2397, 2404 |
| HpyAV | CCTTC | 7 cut(s) | 562, 789, 1583, 1611, 1877, 2273, 2329 |
| HpyCH4III | ACNGT | 6 cut(s) | 527, 758, 836, 958, 1261, 2401 |
| HpyCH4IV | ACGT | 2 cut(s) | 829, 2276 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1180, 1337, 1412, 1859, 1868, 1983, 2137, 2210 |
| HpyF3I | CTNAG | 5 cut(s) | 708, 896, 962, 1648, 2498 |
| HpySE526I | ACGT | 2 cut(s) | 829, 2276 |
| Hsp92I | GRCGYC | 1 cut(s) | 2106 |
| HspAI | GCGC | 1 cut(s) | 2172 |
| KpnI | GGTACC | 1 cut(s) | 1002 |
| Ksp22I | TGATCA | 3 cut(s) | 1158, 1461, 1939 |
| Kzo9I | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| LguI | GCTCTTC | 2 cut(s) | 609, 807 |
| LmnI | GCTCC | 3 cut(s) | 1231, 1314, 2489 |
| Lsp1109I | GCAGC | 1 cut(s) | 2134 |
| LweI | GCATC | 6 cut(s) | 40, 188, 295, 394, 1416, 2046 |
| MaeI | CTAG | 4 cut(s) | 56, 930, 1727, 2267 |
| MaeII | ACGT | 2 cut(s) | 829, 2276 |
| MaeIII | GTNAC | 6 cut(s) | 144, 770, 830, 1369, 1642, 1651 |
| MalI | GATC | 5 cut(s) | 728, 987, 1160, 1463, 1941 |
| MboI | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| MboII | GAAGA | 8 cut(s) | 428, 596, 794, 1199, 1335, 1598, 1808, 2039 |
| MflI | RGATCY | 1 cut(s) | 726 |
| MhlI | GDGCHC | 3 cut(s) | 704, 802, 1185 |
| MlsI | TGGCCA | 1 cut(s) | 219 |
| MluNI | TGGCCA | 1 cut(s) | 219 |
| MlyI | GAGTC | 3 cut(s) | 236, 901, 2279 |
| MmeI | TCCRAC | 6 cut(s) | 332, 564, 731, 772, 1602, 2069 |
| MnlI | CCTC | 8 cut(s) | 127, 266, 717, 1351, 1521, 1990, 2095, 2365 |
| Mox20I | TGGCCA | 1 cut(s) | 219 |
| MroXI | GAANNNNTTC | 2 cut(s) | 410, 1035 |
| MscI | TGGCCA | 1 cut(s) | 219 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1008, 1025, 2018 |
| Msp20I | TGGCCA | 1 cut(s) | 219 |
| MspCI | CTTAAG | 1 cut(s) | 2135 |
| MspI | CCGG | 3 cut(s) | 1179, 1411, 2355 |
| MspR9I | CCNGG | 5 cut(s) | 296, 1180, 1412, 1988, 2355 |
| MssI | GTTTAAAC | 1 cut(s) | 1210 |
| Mva1269I | GAATGC | 2 cut(s) | 1415, 1855 |
| MvaI | CCWGG | 2 cut(s) | 296, 1988 |
| MvnI | CGCG | 1 cut(s) | 2190 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1180, 1337, 1412, 1859, 1868, 1983, 2137, 2210 |
| NciI | CCSGG | 3 cut(s) | 1180, 1412, 2355 |
| NcoI | CCATGG | 2 cut(s) | 214, 1312 |
| NdeI | CATATG | 2 cut(s) | 276, 2153 |
| NdeII | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| NlaIV | GGNNCC | 6 cut(s) | 728, 920, 1000, 1032, 1227, 2161 |
| NmeAIII | GCCGAG | 1 cut(s) | 514 |
| NmuCI | GTSAC | 4 cut(s) | 144, 830, 1369, 1642 |
| NruI | TCGCGA | 1 cut(s) | 2190 |
| NspI | RCATGY | 4 cut(s) | 972, 1013, 2052, 2393 |
| NspV | TTCGAA | 1 cut(s) | 414 |
| PaeI | GCATGC | 1 cut(s) | 1013 |
| PaeR7I | CTCGAG | 1 cut(s) | 1500 |
| PaqCI | CACCTGC | 1 cut(s) | 1099 |
| PceI | AGGCCT | 1 cut(s) | 1593 |
| PciI | ACATGT | 2 cut(s) | 2048, 2389 |
| PciSI | GCTCTTC | 2 cut(s) | 609, 807 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1021 |
| PctI | GAATGC | 2 cut(s) | 1415, 1855 |
| PdmI | GAANNNNTTC | 2 cut(s) | 410, 1035 |
| PfeI | GAWTC | 5 cut(s) | 380, 434, 655, 2192, 2246 |
| PkrI | GCNGC | 1 cut(s) | 2149 |
| PleI | GAGTC | 3 cut(s) | 236, 900, 2279 |
| PmeI | GTTTAAAC | 1 cut(s) | 1210 |
| PpsI | GAGTC | 3 cut(s) | 236, 900, 2279 |
| Ppu21I | YACGTR | 1 cut(s) | 2277 |
| PscI | ACATGT | 2 cut(s) | 2048, 2389 |
| Psp124BI | GAGCTC | 1 cut(s) | 704 |
| Psp6I | CCWGG | 2 cut(s) | 294, 1986 |
| PspEI | GGTNACC | 1 cut(s) | 1642 |
| PspFI | CCCAGC | 2 cut(s) | 1331, 2090 |
| PspGI | CCWGG | 2 cut(s) | 294, 1986 |
| PspN4I | GGNNCC | 6 cut(s) | 728, 920, 1000, 1032, 1227, 2161 |
| PspPI | GGNCC | 2 cut(s) | 1984, 2160 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1668 |
| PsuI | RGATCY | 1 cut(s) | 726 |
| RruI | TCGCGA | 1 cut(s) | 2190 |
| RsaI | GTAC | 5 cut(s) | 281, 680, 960, 1000, 2388 |
| RsaNI | GTAC | 5 cut(s) | 280, 679, 959, 999, 2387 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1008, 1025, 2018 |
| SacI | GAGCTC | 1 cut(s) | 704 |
| SapI | GCTCTTC | 2 cut(s) | 609, 807 |
| SatI | GCNGC | 1 cut(s) | 2148 |
| Sau3AI | GATC | 5 cut(s) | 726, 985, 1158, 1461, 1939 |
| Sau96I | GGNCC | 2 cut(s) | 1984, 2160 |
| ScaI | AGTACT | 1 cut(s) | 960 |
| SchI | GAGTC | 3 cut(s) | 236, 901, 2279 |
| ScrFI | CCNGG | 5 cut(s) | 296, 1180, 1412, 1988, 2355 |
| SduI | GDGCHC | 3 cut(s) | 704, 802, 1185 |
| SfaNI | GCATC | 6 cut(s) | 40, 188, 295, 394, 1416, 2046 |
| SfcI | CTRYAG | 2 cut(s) | 231, 2400 |
| Sfr274I | CTCGAG | 1 cut(s) | 1500 |
| SfuI | TTCGAA | 1 cut(s) | 414 |
| SlaI | CTCGAG | 1 cut(s) | 1500 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1008, 1025, 2018 |
| SmlI | CTYRAG | 4 cut(s) | 185, 1500, 1713, 2135 |
| SmoI | CTYRAG | 4 cut(s) | 185, 1500, 1713, 2135 |
| SnaBI | TACGTA | 1 cut(s) | 2277 |
| SpeI | ACTAGT | 1 cut(s) | 55 |
| SphI | GCATGC | 1 cut(s) | 1013 |
| SseBI | AGGCCT | 1 cut(s) | 1593 |
| SsiI | CCGC | 1 cut(s) | 2420 |
| SspI | AATATT | 1 cut(s) | 1508 |
| SspMI | CTAG | 4 cut(s) | 56, 930, 1727, 2267 |
| SstI | GAGCTC | 1 cut(s) | 704 |
| StuI | AGGCCT | 1 cut(s) | 1593 |
| StyD4I | CCNGG | 5 cut(s) | 294, 1178, 1410, 1986, 2353 |
| StyI | CCWWGG | 5 cut(s) | 214, 922, 1236, 1264, 1312 |
| TaaI | ACNGT | 6 cut(s) | 527, 758, 836, 958, 1261, 2401 |
| TaiI | ACGT | 2 cut(s) | 832, 2279 |
| TaqI | TCGA | 8 cut(s) | 191, 414, 665, 776, 1185, 1419, 1501, 2229 |
| TaqII | GACCGA | 1 cut(s) | 2039 |
| TatI | WGTACW | 3 cut(s) | 279, 678, 958 |
| TfiI | GAWTC | 5 cut(s) | 380, 434, 655, 2192, 2246 |
| TscAI | CASTG | 5 cut(s) | 293, 1168, 1669, 2220, 2404 |
| TseFI | GTSAC | 4 cut(s) | 144, 830, 1369, 1642 |
| TseI | GCWGC | 1 cut(s) | 2147 |
| Tsp45I | GTSAC | 4 cut(s) | 144, 830, 1369, 1642 |
| TspDTI | ATGAA | 6 cut(s) | 182, 540, 581, 794, 2139, 2174 |
| TspGWI | ACGGA | 3 cut(s) | 1013, 1940, 2476 |
| TspRI | CASTG | 5 cut(s) | 293, 1168, 1669, 2220, 2404 |
| Vha464I | CTTAAG | 1 cut(s) | 2135 |
| XapI | RAATTY | 7 cut(s) | 406, 661, 937, 1360, 1546, 1834, 2221 |
| XbaI | TCTAGA | 1 cut(s) | 929 |
| XceI | RCATGY | 4 cut(s) | 972, 1013, 2052, 2393 |
| XhoI | CTCGAG | 1 cut(s) | 1500 |
| XmiI | GTMKAC | 3 cut(s) | 300, 2073, 2403 |
| XmnI | GAANNNNTTC | 2 cut(s) | 410, 1035 |
| XspI | CTAG | 4 cut(s) | 56, 930, 1727, 2267 |
| ZrmI | AGTACT | 1 cut(s) | 960 |