pycom03g10670

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016250
Physical Location & Seq
Reverse (-)
9930196 .. 9932760
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10670.1

Sequence Viewer

Length: 2565 bp
ATGATGGAGATACTGCCAGCTCAACCCTTGAAGCATCTATATCATCTCTCACGCTTACTAGTTCGTCATGTCTCAAGCCAAGAAAGTCTTTCCAAGAAAGTTATTCTTTGTCCTGACCCCTCCTTGCAACAATCTTACATGGAATTGTCACAGACATTCTACGAAGCTATGAAAACTTGTGCATCTCTCAAGTCGATACCCATTGCCAGAAAACTCCATGGCCAACTCATTTCTATAGGCTTGGACTCTGCTATTTTCCTCCAGAACCATCTCTTGCATATGTACTCCCAGTGTGGCCTGGTAGATGATGCTTGTCGGGTTTTTGATAGTATTCAACAACCTAATGTTTTTAGTTGGAATACAATGATCAGTGGCTTGGTAGATTCGCATCGGATGATGGAAGCAGAGAAGTTGTTCGAAGAAATGCCTGTGAGAGATTCTGTGTCTTGGACTACAATGATGTCTGGGCATTTTAACAATGGACAACCAGCAAAGACCATTAAAGTGTTTGCTTCAATGGTTCGGAACTGTGATAGTTTTTCCGACCCATTTTCCTTCTCTTGCGTAATGAAGGCTTGTGGTAGTCTTGGCTACATCAAATTGGCTCTTCAGTTGCATAGTCTTGTGGAGAAGTTAGATTTTGCAAACAACATGGCGATTCAAAATTCGATTATTGATATGTACATTAAGTGTGGTGCATTGAGCTCTGCTGAGAAAATGTTTTGGAGGATCCCATATCCGAGTTTGTTTTGTTGGAACAGTATGGTCTATGGTTACTCGAAACTTTATGGGGTTGGAAGGGCTCTTCATTTGTTTGTTCAAATGCCTGAACGTGACTGTGTGTCTTGGAACACCATGATTTCAATCTTTTCTCAACATGGTTTTGCAGTTGAGAGTCTCAGTATGTTTGTTGAGATGTGGAACCAAGGTTCTAGACCAAATTCTTTGATATATGCCACAGTACTTAGTGCATGTGCAAGCATACATGATCTTGAATGGGGTACCCATTTGCATGCTCGTATCATCCGTATGGAACCAATTCTTGATGTTTTTGCAGGTAGTGGGCTGATTGATATGTATGTCAAATGTGGACACTTGCATTTTGCAAGGCAGGTGTTTAACACCATGACAGAACGCAATGCAGTCTCTTGGACTTCTTTGATCAGTGGAATTGTGCAGTCCGGGCTCGAAGACGAAGCTTTATTGCTGTTTAACCAAATGAGAAAGGCTCCTATTTCCTTGGATGAGTTTATTCTTGCAACAGTCCTTGGGGTTTGTTCAGGCCAAAAGCATGTTTTAGTTGGGGAACAGCTCCATGGATATACAATCAAGGCTGGGATGACCTCTTCTACTCCTGTGGGGAATTCTCTTGTCACAATGTACACAAAGTGCGAAAATACTCATAGTGCAAACCAGGCATTCAAGCTGATGCCAGTTAAAGATATAATATCATGGACAGCAATGATCACGACATTCTCTCAAATTGGTAATGTTGAAAAAGCTCGAGAATATTTTGATAAAATGCCAGAGAGGAATGTCATAACTTGGAATTCAATGTTAGCAACATATTTCCAAAATGGTTTTTGGGAAGAAGGCCTAAAATTGTATATTCTAATGCGAAGGTTGGAGGTTAAACCTGATTGGGTCACCTTAGTAACTTCAATCAGTGCCTGTTCTGATTTAGCAGTATTAAAACTTGGGGTTCAAGTTATAGCTCAAGCTGAAAAACTAGGGTTTATCTCTAATGTTTCAGTCAAAAATAGCATTATTACTTTGTATTCAAGATGTGGGAGAATTGAAGAAGCGAAAAGAGTTTTTGATTCAATTTCTGATAAAAATTTGATTACTTGGAATGCGATTATGGCAGGATATGCTCAAAATGGTGAAGGTAGGAAAGTGATTGATGTTTTTGAGAATATGTTGAAAACGGATTGTGAACCTGATCATATAAGTTTTGTATCGGTTCTATCAGGTTGTAGCCATTCGGGGCTTGTAAAAGAGGGGAAACACTACTTCACTTCCATGACTGAAGAATTTGGCATCTATCCAACATGTGAGCATTTTGCTTGTATGGTAGACCTACTTGGTCGGGCTGGGTTATTAGAGGACGCCAAGAAATTGATAGATGAAATGCCCTTTAAGCCAAATGCTGCCATATGGGGGGCCTTGCTTGGCGCTTGTCGGGTTCATCGCGATTCAAAGTTAGCAGAAGTTGCAGTGAAAAATTTGGTCGATTTAGATATAGATGATTCTGGGAGTTATGTCCTTCTAGCTAATACATATTCTGACTGTGGACAATTAGAAGCTTTTGCAGATGTTAGAAATGAGATGAGAAAGAAGGGCATTGAGAAAAAACCCGGTTGTAGCTGGATAGACGTTGATAATAGGGTACATGTGTTCACTGTAGACCACACTAATCATCCGCAAATAAAGGATATTTATAGAATACTGGATGAGATTGTTAAGAACATAGGAGATACAAGTTGCTCTGTGAATCCACTTAGCTCACTATTTTATCAGGATAAACACATTGAAAAACTTGATGTTGCTGTTGGGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

855

Amino Acids

95.87

Weight (kDa)

6.28

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 113 - 142 2.5e-06 PPR repeat
PPR_2 PF13041 114 - 143 5e-07 PPR repeat family
PPR PF01535 117 - 144 6.8e-06 PPR repeat
PPR_2 PF13041 146 - 193 5.2e-06 PPR repeat family
PPR_2 PF13041 511 - 559 1.4e-08 PPR repeat family
PPR_2 PF13041 613 - 660 5.8e-11 PPR repeat family
E_motif PF20431 730 - 792 3.9e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00672 FvH4_3g26580
malus_domestica MD03G1153100.v1.1
prunus_persica Prupe.6G140100_v2.0.a1
pyrus_communis pycom03g10670
rosa_chinensis RchiOBHm_Chr5g0048221
rosa_laevigata RLG00000034503
rosa_multiflora Rmu_sc0001408.1_g000005
rosa_roxburghii Rroxscaffold_1G00033660
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316300 Rh5BG327000 Rh5CG353200 Rh5DG338100
rosa_wichuraiana Rw5G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 2 cut(s) 1046, 1102
Acc65I GGTACC 1 cut(s) 1001
AccB1I GGYRCC 1 cut(s) 1001
AccI GTMKAC 2 cut(s) 2076, 2406
AccII CGCG 1 cut(s) 2193
AciI CCGC 1 cut(s) 2423
AclWI GGATC 2 cut(s) 724, 737
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 7 cut(s) 664, 940, 1363, 1549, 1837, 2033, 2224
AcuI CTGAAG 2 cut(s) 593, 2049
AcyI GRCGYC 1 cut(s) 2109
AdeI CACNNNGTG 1 cut(s) 1389
AfaI GTAC 6 cut(s) 284, 683, 963, 1003, 1382, 2391
AfiI CCNNNNNNNGG 1 cut(s) 2160
AflIII ACRYGT 2 cut(s) 2051, 2392
AhdI GACNNNNNGTC 1 cut(s) 841
AhlI ACTAGT 1 cut(s) 58
AjnI CCWGG 2 cut(s) 297, 1413
AloI GAACNNNNNNTCC 2 cut(s) 913, 945
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 3 cut(s) 76, 902, 1150
AlwI GGATC 2 cut(s) 724, 737
AlwNI CAGNNNCTG 1 cut(s) 1671
Ama87I CYCGRG 1 cut(s) 1503
AoxI GGCC 5 cut(s) 220, 295, 1282, 1594, 2163
ApeKI GCWGC 1 cut(s) 2150
ApoI RAATTY 7 cut(s) 664, 940, 1363, 1549, 1837, 2033, 2224
Asp700I GAANNNNTTC 2 cut(s) 413, 1038
Asp718I GGTACC 1 cut(s) 1001
AspLEI GCGC 1 cut(s) 2177
AspS9I GGNCC 1 cut(s) 2163
AsuC2I CCSGG 2 cut(s) 1183, 2358
AsuHPI GGTGA 2 cut(s) 1639, 1895
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 1 cut(s) 1503
BaeI ACNNNNGTAYC 2 cut(s) 2381, 2414
BalI TGGCCA 1 cut(s) 222
BamHI GGATCC 1 cut(s) 729
BanI GGYRCC 1 cut(s) 1001
BanII GRGCYC 3 cut(s) 707, 805, 1188
BbsI GAAGAC 1 cut(s) 1197
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 2137
BccI CCATC 2 cut(s) 276, 391
BciT130I CCWGG 2 cut(s) 299, 1415
BclI TGATCA 4 cut(s) 366, 1161, 1464, 1942
BcnI CCSGG 2 cut(s) 1183, 2358
BcoDI GTCTC 3 cut(s) 76, 902, 1150
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 4 cut(s) 59, 933, 1730, 2270
BfmI CTRYAG 2 cut(s) 234, 2403
BfoI RGCGCY 1 cut(s) 2178
BfuAI ACCTGC 2 cut(s) 1046, 1102
BisI GCNGC 1 cut(s) 2151
BlsI GCNGC 1 cut(s) 2152
BmcAI AGTACT 1 cut(s) 963
Bme1390I CCNGG 4 cut(s) 299, 1183, 1415, 2358
BmeRI GACNNNNNGTC 1 cut(s) 841
BmeT110I CYCGRG 1 cut(s) 1503
BmgT120I GGNCC 1 cut(s) 2163
BmiI GGNNCC 6 cut(s) 731, 923, 1003, 1035, 1230, 2164
BmrFI CCNGG 4 cut(s) 299, 1183, 1415, 2358
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 6 cut(s) 43, 191, 298, 397, 1419, 2049
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 1197
BplI GAGNNNNNCTC 2 cut(s) 1213, 1245
BpmI CTGGAG 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 3 cut(s) 58, 173, 1701
BpuMI CCSGG 2 cut(s) 1183, 2358
BsaBI GATNNNNATC 2 cut(s) 387, 863
BsaHI GRCGYC 1 cut(s) 2109
BsaJI CCNNGG 5 cut(s) 217, 925, 1239, 1267, 1315
Bsc4I CCNNNNNNNGG 1 cut(s) 2160
Bse1I ACTGG 3 cut(s) 289, 1433, 2454
Bse3DI GCAATG 3 cut(s) 201, 1144, 1467
Bse8I GATNNNNATC 2 cut(s) 387, 863
BseBI CCWGG 2 cut(s) 299, 1415
BseDI CCNNGG 5 cut(s) 217, 925, 1239, 1267, 1315
BseGI GGATG 6 cut(s) 399, 1023, 1249, 1344, 2419, 2458
BseJI GATNNNNATC 2 cut(s) 387, 863
BseLI CCNNNNNNNGG 1 cut(s) 2160
BseMI GCAATG 3 cut(s) 201, 1144, 1467
BseMII CTCAG 2 cut(s) 702, 913
BseNI ACTGG 3 cut(s) 289, 1433, 2454
BseXI GCAGC 1 cut(s) 2137
BseYI CCCAGC 2 cut(s) 1334, 2093
BsgI GTGCAG 1 cut(s) 1196
Bsh1236I CGCG 1 cut(s) 2193
BshFI GGCC 5 cut(s) 222, 297, 1284, 1596, 2165
BshNI GGYRCC 1 cut(s) 1001
BsiHKAI GWGCWC 1 cut(s) 707
BsiHKCI CYCGRG 1 cut(s) 1503
BsiSI CCGG 2 cut(s) 1182, 2358
BslI CCNNNNNNNGG 1 cut(s) 2160
BsmAI GTCTC 3 cut(s) 76, 902, 1150
BsmI GAATGC 2 cut(s) 1418, 1858
BsnI GGCC 5 cut(s) 222, 297, 1284, 1596, 2165
BsoBI CYCGRG 1 cut(s) 1503
Bsp119I TTCGAA 1 cut(s) 417
Bsp1286I GDGCHC 3 cut(s) 707, 805, 1188
Bsp1407I TGTACA 2 cut(s) 681, 1380
Bsp143I GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
Bsp19I CCATGG 2 cut(s) 217, 1315
Bsp68I TCGCGA 1 cut(s) 2193
BspACI CCGC 1 cut(s) 2423
BspANI GGCC 5 cut(s) 222, 297, 1284, 1596, 2165
BspCNI CTCAG 2 cut(s) 703, 912
BspFNI CGCG 1 cut(s) 2193
BspLI GGNNCC 6 cut(s) 731, 923, 1003, 1035, 1230, 2164
BspMI ACCTGC 2 cut(s) 1046, 1102
BspPI GGATC 2 cut(s) 724, 737
BspQI GCTCTTC 2 cut(s) 612, 810
BspT104I TTCGAA 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 1001
BsrDI GCAATG 3 cut(s) 201, 1144, 1467
BsrGI TGTACA 2 cut(s) 681, 1380
BsrI ACTGG 3 cut(s) 289, 1433, 2454
BssECI CCNNGG 5 cut(s) 217, 925, 1239, 1267, 1315
BssMI GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
BssNI GRCGYC 1 cut(s) 2109
BssT1I CCWWGG 5 cut(s) 217, 925, 1239, 1267, 1315
Bst2UI CCWGG 2 cut(s) 299, 1415
Bst4CI ACNGT 7 cut(s) 530, 761, 839, 961, 1264, 2291, 2404
Bst6I CTCTTC 3 cut(s) 612, 810, 1351
BstACI GRCGYC 1 cut(s) 2109
BstAPI GCANNNNNTGC 2 cut(s) 1871, 2213
BstAUI TGTACA 2 cut(s) 681, 1380
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 18, 979, 1014
BstDEI CTNAG 5 cut(s) 711, 899, 965, 1651, 2501
BstDSI CCRYGG 2 cut(s) 217, 1315
BstEII GGTNACC 1 cut(s) 1645
BstF5I GGATG 6 cut(s) 399, 1023, 1249, 1344, 2419, 2458
BstFNI CGCG 1 cut(s) 2193
BstH2I RGCGCY 1 cut(s) 2178
BstHHI GCGC 1 cut(s) 2177
BstKTI GATC 6 cut(s) 369, 732, 991, 1164, 1467, 1945
BstMAI GTCTC 3 cut(s) 76, 902, 1150
BstMBI GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
BstMWI GCNNNNNNNGC 6 cut(s) 1183, 1415, 1862, 1871, 2140, 2213
BstNI CCWGG 2 cut(s) 299, 1415
BstNSI RCATGY 5 cut(s) 975, 1016, 1295, 2055, 2396
BstPI GGTNACC 1 cut(s) 1645
BstSCI CCNGG 4 cut(s) 297, 1181, 1413, 2356
BstSFI CTRYAG 2 cut(s) 234, 2403
BstUI CGCG 1 cut(s) 2193
BstV1I GCAGC 1 cut(s) 2137
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 1 cut(s) 729
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 5 cut(s) 222, 297, 1284, 1596, 2165
BtgI CCRYGG 2 cut(s) 217, 1315
BtgZI GCGATG 1 cut(s) 2174
BtsCI GGATG 6 cut(s) 399, 1023, 1249, 1344, 2419, 2458
BtsI GCAGTG 1 cut(s) 2223
BtsIMutI CAGTG 6 cut(s) 296, 376, 1171, 1672, 2223, 2400
BtuMI TCGCGA 1 cut(s) 2193
BveI ACCTGC 2 cut(s) 1046, 1102
Cac8I GCNNGC 3 cut(s) 18, 979, 1014
CaiI CAGNNNCTG 1 cut(s) 1671
CfoI GCGC 1 cut(s) 2177
Cfr13I GGNCC 1 cut(s) 2163
CseI GACGC 1 cut(s) 2117
Csp6I GTAC 6 cut(s) 283, 682, 962, 1002, 1381, 2390
CviQI GTAC 6 cut(s) 283, 682, 962, 1002, 1381, 2390
DdeI CTNAG 5 cut(s) 711, 899, 965, 1651, 2501
DpnI GATC 6 cut(s) 368, 731, 990, 1163, 1466, 1944
DpnII GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
DraIII CACNNNGTG 1 cut(s) 1389
DriI GACNNNNNGTC 1 cut(s) 841
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 3 cut(s) 612, 810, 1351
Eam1105I GACNNNNNGTC 1 cut(s) 841
EarI CTCTTC 3 cut(s) 612, 810, 1351
Ecl136II GAGCTC 1 cut(s) 705
Eco130I CCWWGG 5 cut(s) 217, 925, 1239, 1267, 1315
Eco147I AGGCCT 1 cut(s) 1596
Eco24I GRGCYC 3 cut(s) 707, 805, 1188
Eco53kI GAGCTC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 593, 2049
Eco88I CYCGRG 1 cut(s) 1503
Eco91I GGTNACC 1 cut(s) 1645
EcoICRI GAGCTC 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 2163
EcoO65I GGTNACC 1 cut(s) 1645
EcoRI GAATTC 2 cut(s) 1363, 1549
EcoRII CCWGG 2 cut(s) 297, 1413
EcoT14I CCWWGG 5 cut(s) 217, 925, 1239, 1267, 1315
EcoT38I GRGCYC 3 cut(s) 707, 805, 1188
ErhI CCWWGG 5 cut(s) 217, 925, 1239, 1267, 1315
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 90, 122
FauNDI CATATG 2 cut(s) 279, 2156
FbaI TGATCA 4 cut(s) 366, 1161, 1464, 1942
FblI GTMKAC 2 cut(s) 2076, 2406
Fnu4HI GCNGC 1 cut(s) 2151
FokI GGATG 6 cut(s) 406, 1010, 1256, 1351, 2406, 2465
FriOI GRGCYC 3 cut(s) 707, 805, 1188
Fsp4HI GCNGC 1 cut(s) 2151
FspBI CTAG 4 cut(s) 59, 933, 1730, 2270
GlaI GCGC 1 cut(s) 2176
GluI GCNGC 1 cut(s) 2151
GsaI CCCAGC 2 cut(s) 1338, 2097
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 2178
HaeIII GGCC 5 cut(s) 222, 297, 1284, 1596, 2165
HapII CCGG 2 cut(s) 1182, 2358
HgaI GACGC 1 cut(s) 2117
HhaI GCGC 1 cut(s) 2177
Hin1I GRCGYC 1 cut(s) 2109
Hin6I GCGC 1 cut(s) 2175
HinP1I GCGC 1 cut(s) 2175
HindIII AAGCTT 2 cut(s) 1197, 2304
HinfI GANTC 9 cut(s) 245, 383, 437, 658, 895, 1820, 2195, 2249, 2494
HpaII CCGG 2 cut(s) 1182, 2358
HphI GGTGA 2 cut(s) 1639, 1895
Hpy166II GTNNAC 7 cut(s) 1091, 1383, 1937, 2077, 2294, 2400, 2407
Hpy188I TCNGA 7 cut(s) 393, 525, 544, 741, 1678, 1831, 2287
Hpy8I GTNNAC 7 cut(s) 1091, 1383, 1937, 2077, 2294, 2400, 2407
HpyAV CCTTC 8 cut(s) 565, 565, 792, 1586, 1614, 1880, 2276, 2332
HpyCH4III ACNGT 7 cut(s) 530, 761, 839, 961, 1264, 2291, 2404
HpyCH4IV ACGT 2 cut(s) 832, 2376
HpyF10VI GCNNNNNNNGC 6 cut(s) 1183, 1415, 1862, 1871, 2140, 2213
HpyF3I CTNAG 5 cut(s) 711, 899, 965, 1651, 2501
HpySE526I ACGT 2 cut(s) 832, 2376
Hsp92I GRCGYC 1 cut(s) 2109
HspAI GCGC 1 cut(s) 2175
KpnI GGTACC 1 cut(s) 1005
Ksp22I TGATCA 4 cut(s) 366, 1161, 1464, 1942
Kzo9I GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
LguI GCTCTTC 2 cut(s) 612, 810
LmnI GCTCC 2 cut(s) 1234, 1317
Lsp1109I GCAGC 1 cut(s) 2137
LweI GCATC 6 cut(s) 43, 191, 298, 397, 1419, 2049
MaeI CTAG 4 cut(s) 59, 933, 1730, 2270
MaeII ACGT 2 cut(s) 832, 2376
MaeIII GTNAC 6 cut(s) 147, 773, 833, 1372, 1645, 1654
MalI GATC 6 cut(s) 368, 731, 990, 1163, 1466, 1944
MboI GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
MboII GAAGA 8 cut(s) 431, 599, 797, 1202, 1338, 1601, 1811, 2042
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 3 cut(s) 707, 805, 1188
MlsI TGGCCA 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 2 cut(s) 239, 904
MmeI TCCRAC 6 cut(s) 335, 567, 734, 775, 1605, 2072
MnlI CCTC 8 cut(s) 130, 269, 720, 1354, 1524, 1621, 1993, 2098
Mox20I TGGCCA 1 cut(s) 222
MroXI GAANNNNTTC 2 cut(s) 413, 1038
MscI TGGCCA 1 cut(s) 222
MslI CAYNNNNRTG 4 cut(s) 503, 1011, 1028, 2021
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 2 cut(s) 1182, 2358
MspR9I CCNGG 4 cut(s) 299, 1183, 1415, 2358
Mva1269I GAATGC 2 cut(s) 1418, 1858
MvaI CCWGG 2 cut(s) 299, 1415
MvnI CGCG 1 cut(s) 2193
MwoI GCNNNNNNNGC 6 cut(s) 1183, 1415, 1862, 1871, 2140, 2213
NciI CCSGG 2 cut(s) 1183, 2358
NcoI CCATGG 2 cut(s) 217, 1315
NdeI CATATG 2 cut(s) 279, 2156
NdeII GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
NlaIV GGNNCC 6 cut(s) 731, 923, 1003, 1035, 1230, 2164
NmuCI GTSAC 4 cut(s) 147, 833, 1372, 1645
NruI TCGCGA 1 cut(s) 2193
NspI RCATGY 5 cut(s) 975, 1016, 1295, 2055, 2396
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 1016
PaeR7I CTCGAG 1 cut(s) 1503
PaqCI CACCTGC 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 1596
PciI ACATGT 2 cut(s) 2051, 2392
PciSI GCTCTTC 2 cut(s) 612, 810
PcsI WCGNNNNNNNCGW 1 cut(s) 1024
PctI GAATGC 2 cut(s) 1418, 1858
PdmI GAANNNNTTC 2 cut(s) 413, 1038
PfeI GAWTC 7 cut(s) 383, 437, 658, 1820, 2195, 2249, 2494
PkrI GCNGC 1 cut(s) 2152
PleI GAGTC 2 cut(s) 239, 903
PpsI GAGTC 2 cut(s) 239, 903
PscI ACATGT 2 cut(s) 2051, 2392
Psp124BI GAGCTC 1 cut(s) 707
Psp6I CCWGG 2 cut(s) 297, 1413
PspEI GGTNACC 1 cut(s) 1645
PspFI CCCAGC 2 cut(s) 1334, 2093
PspGI CCWGG 2 cut(s) 297, 1413
PspN4I GGNNCC 6 cut(s) 731, 923, 1003, 1035, 1230, 2164
PspPI GGNCC 1 cut(s) 2163
PstNI CAGNNNCTG 1 cut(s) 1671
PsuI RGATCY 1 cut(s) 729
RruI TCGCGA 1 cut(s) 2193
RsaI GTAC 6 cut(s) 284, 683, 963, 1003, 1382, 2391
RsaNI GTAC 6 cut(s) 283, 682, 962, 1002, 1381, 2390
RseI CAYNNNNRTG 4 cut(s) 503, 1011, 1028, 2021
SacI GAGCTC 1 cut(s) 707
SapI GCTCTTC 2 cut(s) 612, 810
SatI GCNGC 1 cut(s) 2151
Sau3AI GATC 6 cut(s) 366, 729, 988, 1161, 1464, 1942
Sau96I GGNCC 1 cut(s) 2163
ScaI AGTACT 1 cut(s) 963
SchI GAGTC 2 cut(s) 239, 904
ScrFI CCNGG 4 cut(s) 299, 1183, 1415, 2358
SduI GDGCHC 3 cut(s) 707, 805, 1188
SfaNI GCATC 6 cut(s) 43, 191, 298, 397, 1419, 2049
SfcI CTRYAG 2 cut(s) 234, 2403
Sfr274I CTCGAG 1 cut(s) 1503
SfuI TTCGAA 1 cut(s) 417
SlaI CTCGAG 1 cut(s) 1503
SmiMI CAYNNNNRTG 4 cut(s) 503, 1011, 1028, 2021
SmlI CTYRAG 4 cut(s) 73, 188, 1503, 1716
SmoI CTYRAG 4 cut(s) 73, 188, 1503, 1716
SpeI ACTAGT 1 cut(s) 58
SphI GCATGC 1 cut(s) 1016
SseBI AGGCCT 1 cut(s) 1596
SsiI CCGC 1 cut(s) 2423
SspI AATATT 1 cut(s) 1511
SspMI CTAG 4 cut(s) 59, 933, 1730, 2270
SstI GAGCTC 1 cut(s) 707
StuI AGGCCT 1 cut(s) 1596
StyD4I CCNGG 4 cut(s) 297, 1181, 1413, 2356
StyI CCWWGG 5 cut(s) 217, 925, 1239, 1267, 1315
TaaI ACNGT 7 cut(s) 530, 761, 839, 961, 1264, 2291, 2404
TaiI ACGT 2 cut(s) 835, 2379
TaqI TCGA 7 cut(s) 194, 417, 668, 779, 1188, 1504, 2232
TatI WGTACW 4 cut(s) 282, 681, 961, 1380
TfiI GAWTC 7 cut(s) 383, 437, 658, 1820, 2195, 2249, 2494
TscAI CASTG 6 cut(s) 296, 376, 1171, 1672, 2223, 2407
TseFI GTSAC 4 cut(s) 147, 833, 1372, 1645
TseI GCWGC 1 cut(s) 2150
Tsp45I GTSAC 4 cut(s) 147, 833, 1372, 1645
TspDTI ATGAA 5 cut(s) 185, 584, 797, 2142, 2177
TspGWI ACGGA 2 cut(s) 1016, 1943
TspRI CASTG 6 cut(s) 296, 376, 1171, 1672, 2223, 2407
XapI RAATTY 7 cut(s) 664, 940, 1363, 1549, 1837, 2033, 2224
XbaI TCTAGA 1 cut(s) 932
XceI RCATGY 5 cut(s) 975, 1016, 1295, 2055, 2396
XhoI CTCGAG 1 cut(s) 1503
XmiI GTMKAC 2 cut(s) 2076, 2406
XmnI GAANNNNTTC 2 cut(s) 413, 1038
XspI CTAG 4 cut(s) 59, 933, 1730, 2270
ZrmI AGTACT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.