FvH4_3g26580

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016250
Physical Location & Seq
Reverse (-)
19693604 .. 19696216
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26580.t1

Sequence Viewer

Length: 2613 bp
ATGGAACAATCTTACATGCAATTGTCACAAAATTTTTATGAAGCCATGAAAGCCTGTGCATCTCTAAGGTCGATACCCATTGCCAGAAAACTGCATGGCCAACTCATTTCTGTAGGATTGGACTCTGCCATTTTCCTCCAGAACCATCTCTTGCACATGTACTCCCGTTGCAGTTTGATAGATGATGCTCGCCGAATTTTCTTTAGTATTCAACGTCCTAACGTGTTTAGCTGGAATACAATGATTAGCGCGTTGGTAGACTGGGGTCACATGGGGGAGGCAGAGACGTTGTTCAATAAAATGCCTGAGAGAGACACCGTCTCCTGGACGACAATGATGTCTGGCTATTTTCATAATGGGCAACCTGAGGATGCAATTAAAGTGTTTGCTTCAATGGTATGGAATCGTGACAGTTTCTATGACCCATTTTCCTTCTCTTGTGTAATGAAGGCTTGTGGTAGCCTTGGTCACATTAAGTTGGCCCTTCAGTTGCATAGTCTACTGGAGAAATTATATTTTGGAGGCAATATGGTTATTCATAATTCGGTAATTGATATGTACATCAAGTGTGGTGCACTTCGATTGGCTGAGAAGCTATTTATGAGGATCCCTAATCCTAGTTTGTTTTGTTGGAACAGTATGATCTATGGTTGCTCAAAACTTTATGGGGTCAGAAGGGCTCTCCATATGTTCATTGAAATGCCTGAACGTGATTGTGTGTCTTGGAATACCATAATATCAATCTTTTCTCAACATGGTTTTGGGGTTGAGAGTCTCAGTATGTTTGTTGAGATGTGGAATCATGGTTTTAGACCAAATGCTATGATATATGCCACTGTACTCAGTGCATGTGCAAGTATACATGATCTTGAATGGGGTAGTCATTTGCATGCTAGGATACTCCGTATGGAACCAAGCATGGATGTTTTCATGGGTAGCGGGCTGGTTGATATGTATGTGAAATGTGGACAGTTGCATCTTGCAAGGCAGGTGTTTGACAATATGACAGAACACAATGCAGTTTCTTGGACTTCTATGATCAGTGGAGTCATGCATTTTGGGCTCAAAGATGAAGCTTTAGTACTGTTTAACCGAATGAGAAAGGCTCCTGTCGTCTTGGATGAGTTTACTCTTGCAACAGTTCTTGGGGTTTGTTCAGGCCAGGAACATGCTTGCGTTGGGGAGCAGCTCCATGGATATACAATCAAGGGTGGAATGATCTCCTCTATTCCTGTAGGGAATGCTCTTGTTACAATGTATGCAAAATGTGGAAATACTGATAAAGCCAACCAAGCATTTGAGTTGATGCCTGCTAAAGATATAATATCATGGACATCCATGATCACAGCATTCTCTCAAACTGGTGATGTTGAAAAATCCCGAGAATATTTTGATAAAATGCCAGAGCGAAATGTCATAAGTTGGAACTCAATGTTGGGAACATATTTCCAAAATGATTTATGGGAAGAGGGCCTAAAATTGTATACTTTAATGCGAAGGGTAGGGGTTAACCTGGATTGGATCACACTAGTAACTTCAATCAGTGCCTGTGCTGATTTAGCAATATTGAAACTTGGGCTGCAGATTATAGCTCAAGCTGAAAAATTAGGATTTGGTTCTAATGTTTCAGTCATGAATAGCATTATTATTATGTATTCAAGATGTGGACGAATTATAGAAGCAAAAGGAGTTTTTGATTCAATATGTGATAAAAATTTGGTTTCTTGGAATTCACTTATGGCAGGATATGCTCAAAATGGACAAGGTAGGAAGGTGATTGAGGTTTTTGAGCGTATGTTGAAAATGGACTGCCCACCTGATCATATAAGCTATGTATCTGTTCTATCAGGTTGTGGTCATTCAGGGCTTGTAACGGATGGGAAACACTACTTCAGTTCTATGACCGAGGATTTTGGCATCAATCCTACATGTGAACATTTTGCCTGTATGGTAGATCTATTTGGTCGAGCTGGGTTACTAACGGAGGCCAGGAATTTGATTGATGCAATGCCGTTTAAGCCAAATGCTGCTATCTGGGGGGCTCTTCTTGGTGCTTGCCGGCTTCATCGCGATTATAATCTAGCAGAATTTGCATCAAGAAATTTACTTGAATTAGATTTGGATGATTCTGGCAGTTATGTCCTTATAGCTAATACATATTCAGATTGTGGACAACTAGAAGCTTTTGCAGATGTAAGAAAACAGATGAGAAATAAAGGAATAGAGAAAAATCCTGGCTGTAGCTGGATAGAGGTTAATAATAGGGTACATGTGTTTACCGTAGATGACACTAATCATCCACAAATCAAGGATGTTTATAGAATACTGGAGAAGATAGTCAAGAAGATAGAAGATACAGGATGCTATGTCAGTTCAAGTAATGAAGTTCGTTCTCAGCTCCATCATAGTGAGAAGCTTGCTGTTGCTTTTGGGCTGCTTAGCTTGCCTGCGTGGATGCCGATATATGTAATGAAAAATCTTCGAGTTTGCCATGATTGTCACTTGGTAATCAAGCTGATCTCTGTTGTTACCTCAAGGGAACTTATAGTGCGGGATGGACACCGGTTTCATCATTTCAAGGATGGATGTTGCTCCTGTGGAGACTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

871

Amino Acids

98.17

Weight (kDa)

6.56

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 73 - 104 3.3e-06 PPR repeat family
PPR PF01535 76 - 104 3.8e-06 PPR repeat
PPR_2 PF13041 104 - 152 1.1e-07 PPR repeat family
PPR PF01535 107 - 134 8.5e-07 PPR repeat
PPR_2 PF13041 339 - 384 3.5e-06 PPR repeat family
PPR PF01535 442 - 472 1.6e-06 PPR repeat
PPR_2 PF13041 470 - 518 3.2e-07 PPR repeat family
PPR_2 PF13041 572 - 619 1.1e-11 PPR repeat family
PPR PF01535 574 - 604 1.1e-07 PPR repeat
E_motif PF20431 689 - 751 7.3e-19 E motif
DYW_deaminase PF14432 797 - 870 4.1e-30 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00672 FvH4_3g26580
malus_domestica MD03G1153100.v1.1
prunus_persica Prupe.6G140100_v2.0.a1
pyrus_communis pycom03g10670
rosa_chinensis RchiOBHm_Chr5g0048221
rosa_laevigata RLG00000034503
rosa_multiflora Rmu_sc0001408.1_g000005
rosa_roxburghii Rroxscaffold_1G00033660
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316300 Rh5BG327000 Rh5CG353200 Rh5DG338100
rosa_wichuraiana Rw5G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2076
AarI CACCTGC 1 cut(s) 979
AasI GACNNNNNNGTC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 979
AccI GTMKAC 4 cut(s) 258, 499, 859, 1484
AccII CGCG 2 cut(s) 251, 2070
AciI CCGC 2 cut(s) 939, 2551
AclWI GGATC 3 cut(s) 601, 614, 1529
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 7 cut(s) 31, 195, 1714, 1729, 1993, 2087, 2101
AcuI CTGAAG 2 cut(s) 470, 1876
AfaI GTAC 5 cut(s) 161, 560, 840, 1083, 2268
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 4 cut(s) 156, 222, 1928, 2269
AgeI ACCGGT 1 cut(s) 2562
AhlI ACTAGT 1 cut(s) 1528
AjnI CCWGG 5 cut(s) 323, 1161, 1512, 1988, 2233
AjuI GAANNNNNNNTTGG 2 cut(s) 1418, 1450
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 5 cut(s) 278, 306, 325, 779, 2595
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 3 cut(s) 601, 614, 1529
AlwNI CAGNNNCTG 1 cut(s) 1548
Ama87I CYCGRG 1 cut(s) 1380
AoxI GGCC 5 cut(s) 97, 480, 1159, 1471, 1986
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 4 cut(s) 1186, 1579, 2027, 2434
ApoI RAATTY 7 cut(s) 31, 195, 1714, 1729, 1993, 2087, 2101
AsiGI ACCGGT 1 cut(s) 2562
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 481, 1471
AsuHPI GGTGA 2 cut(s) 1376, 1786
AvaI CYCGRG 1 cut(s) 1380
AxyI CCTNAGG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 577
BaeI ACNNNNGTAYC 2 cut(s) 2258, 2291
BalI TGGCCA 1 cut(s) 99
BamHI GGATCC 1 cut(s) 606
BanII GRGCYC 3 cut(s) 682, 1065, 2044
BarI GAAGNNNNNNTAC 2 cut(s) 1065, 1097
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 4 cut(s) 1198, 1566, 2014, 2421
BccI CCATC 5 cut(s) 153, 1871, 2409, 2549, 2576
BceAI ACGGC 1 cut(s) 1996
BciT130I CCWGG 5 cut(s) 325, 1163, 1514, 1990, 2235
BciVI GTATCC 1 cut(s) 891
BclI TGATCA 3 cut(s) 1038, 1341, 1819
BcoDI GTCTC 5 cut(s) 278, 306, 325, 779, 2595
BcuI ACTAGT 1 cut(s) 1528
BfaI CTAG 5 cut(s) 618, 894, 1529, 2081, 2177
BfmI CTRYAG 4 cut(s) 111, 1233, 1580, 2239
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 891
BglII AGATCT 1 cut(s) 1954
BisI GCNGC 4 cut(s) 1187, 1580, 2028, 2435
BlpI GCTNAGC 1 cut(s) 2438
BlsI GCNGC 4 cut(s) 1188, 1581, 2029, 2436
BmcAI AGTACT 1 cut(s) 1083
Bme1390I CCNGG 5 cut(s) 325, 1163, 1514, 1990, 2235
BmeT110I CYCGRG 1 cut(s) 1380
BmgT120I GGNCC 2 cut(s) 481, 1471
BmiI GGNNCC 3 cut(s) 608, 912, 1107
BmrFI CCNGG 5 cut(s) 325, 1163, 1514, 1990, 2235
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BoxI GACNNNNGTC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 1090, 1122
BpmI CTGGAG 3 cut(s) 122, 524, 2348
Bpu1102I GCTNAGC 1 cut(s) 2438
BpuEI CTTGAG 2 cut(s) 1578, 2518
BsaBI GATNNNNATC 1 cut(s) 2076
BsaJI CCNNGG 3 cut(s) 463, 1192, 1905
BsaWI WCCGGW 1 cut(s) 2562
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 2 cut(s) 2058, 2562
Bse1I ACTGG 5 cut(s) 266, 507, 1366, 2331, 2612
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 2 cut(s) 78, 2013
Bse8I GATNNNNATC 1 cut(s) 2076
BseBI CCWGG 5 cut(s) 325, 1163, 1514, 1990, 2235
BseDI CCNNGG 3 cut(s) 463, 1192, 1905
BseJI GATNNNNATC 1 cut(s) 2076
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 78, 2013
BseMII CTCAG 6 cut(s) 297, 357, 579, 790, 856, 2408
BseNI ACTGG 5 cut(s) 266, 507, 1366, 2331, 2612
BseRI GAGGAG 1 cut(s) 1213
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 4 cut(s) 1198, 1566, 2014, 2421
BseYI CCCAGC 1 cut(s) 1970
Bsh1236I CGCG 2 cut(s) 251, 2070
BshFI GGCC 5 cut(s) 99, 482, 1161, 1473, 1988
BshTI ACCGGT 1 cut(s) 2562
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 1380
BsiSI CCGG 2 cut(s) 2059, 2563
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 5 cut(s) 278, 306, 325, 779, 2595
BsmBI CGTCTC 2 cut(s) 278, 325
BsmI GAATGC 2 cut(s) 1246, 1349
BsnI GGCC 5 cut(s) 99, 482, 1161, 1473, 1988
BsoBI CYCGRG 1 cut(s) 1380
Bsp1286I GDGCHC 4 cut(s) 577, 682, 1065, 2044
Bsp1407I TGTACA 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 2438
Bsp19I CCATGG 1 cut(s) 1192
Bsp68I TCGCGA 1 cut(s) 2070
BspACI CCGC 2 cut(s) 939, 2551
BspANI GGCC 5 cut(s) 99, 482, 1161, 1473, 1988
BspCNI CTCAG 6 cut(s) 298, 358, 580, 789, 855, 2407
BspFNI CGCG 2 cut(s) 251, 2070
BspHI TCATGA 1 cut(s) 1632
BspLI GGNNCC 3 cut(s) 608, 912, 1107
BspMAI CTGCAG 1 cut(s) 1584
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 3 cut(s) 601, 614, 1529
BspQI GCTCTTC 1 cut(s) 2049
BsrDI GCAATG 2 cut(s) 78, 2013
BsrFI RCCGGY 2 cut(s) 2058, 2562
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 5 cut(s) 266, 507, 1366, 2331, 2612
BssAI RCCGGY 2 cut(s) 2058, 2562
BssECI CCNNGG 3 cut(s) 463, 1192, 1905
BssNAI GTATAC 2 cut(s) 860, 1485
BssT1I CCWWGG 2 cut(s) 463, 1192
Bst1107I GTATAC 2 cut(s) 860, 1485
Bst2UI CCWGG 5 cut(s) 325, 1163, 1514, 1990, 2235
Bst4CI ACNGT 8 cut(s) 319, 413, 638, 838, 972, 1086, 1141, 2281
Bst6I CTCTTC 2 cut(s) 1461, 2049
BstAPI GCANNNNNTGC 2 cut(s) 1748, 2090
BstAUI TGTACA 1 cut(s) 558
BstDEI CTNAG 8 cut(s) 65, 306, 366, 588, 776, 842, 2394, 2438
BstDSI CCRYGG 1 cut(s) 1192
BstFNI CGCG 2 cut(s) 251, 2070
BstHHI GCGC 1 cut(s) 251
BstMAI GTCTC 5 cut(s) 278, 306, 325, 779, 2595
BstMWI GCNNNNNNNGC 8 cut(s) 50, 1060, 1292, 1559, 1748, 2017, 2090, 2443
BstNI CCWGG 5 cut(s) 325, 1163, 1514, 1990, 2235
BstNSI RCATGY 7 cut(s) 19, 160, 852, 893, 1172, 1932, 2273
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 5 cut(s) 323, 1161, 1512, 1988, 2233
BstSFI CTRYAG 4 cut(s) 111, 1233, 1580, 2239
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 2 cut(s) 251, 2070
BstV1I GCAGC 4 cut(s) 1198, 1566, 2014, 2421
BstX2I RGATCY 2 cut(s) 606, 1954
BstYI RGATCY 2 cut(s) 606, 1954
BstZ17I GTATAC 2 cut(s) 860, 1485
Bsu36I CCTNAGG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 5 cut(s) 99, 482, 1161, 1473, 1988
BtgI CCRYGG 1 cut(s) 1192
BtgZI GCGATG 1 cut(s) 2051
BtsIMutI CAGTG 4 cut(s) 834, 850, 1048, 1549
BtuMI TCGCGA 1 cut(s) 2070
BveI ACCTGC 1 cut(s) 979
CaiI CAGNNNCTG 1 cut(s) 1548
CciI TCATGA 1 cut(s) 1632
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 2 cut(s) 2058, 2562
Cfr13I GGNCC 2 cut(s) 481, 1471
Csp6I GTAC 5 cut(s) 160, 559, 839, 1082, 2267
CspAI ACCGGT 1 cut(s) 2562
CviQI GTAC 5 cut(s) 160, 559, 839, 1082, 2267
DdeI CTNAG 8 cut(s) 65, 306, 366, 588, 776, 842, 2394, 2438
DrdI GACNNNNNNGTC 1 cut(s) 337
DseDI GACNNNNNNGTC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 1461, 2049
EarI CTCTTC 2 cut(s) 1461, 2049
Eco130I CCWWGG 2 cut(s) 463, 1192
Eco24I GRGCYC 3 cut(s) 682, 1065, 2044
Eco57I CTGAAG 2 cut(s) 470, 1876
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 1380
EcoO109I RGGNCCY 1 cut(s) 1471
EcoRI GAATTC 1 cut(s) 1729
EcoRII CCWGG 5 cut(s) 323, 1161, 1512, 1988, 2233
EcoT14I CCWWGG 2 cut(s) 463, 1192
EcoT22I ATGCAT 1 cut(s) 1056
EcoT38I GRGCYC 3 cut(s) 682, 1065, 2044
ErhI CCWWGG 2 cut(s) 463, 1192
Esp3I CGTCTC 2 cut(s) 278, 325
FauI CCCGC 2 cut(s) 932, 2544
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 3 cut(s) 1038, 1341, 1819
FblI GTMKAC 4 cut(s) 258, 499, 859, 1484
Fnu4HI GCNGC 4 cut(s) 1187, 1580, 2028, 2435
FriOI GRGCYC 3 cut(s) 682, 1065, 2044
Fsp4HI GCNGC 4 cut(s) 1187, 1580, 2028, 2435
FspBI CTAG 5 cut(s) 618, 894, 1529, 2081, 2177
GlaI GCGC 1 cut(s) 250
GluI GCNGC 4 cut(s) 1187, 1580, 2028, 2435
GsaI CCCAGC 1 cut(s) 1974
GsuI CTGGAG 3 cut(s) 122, 524, 2348
HaeIII GGCC 5 cut(s) 99, 482, 1161, 1473, 1988
HapII CCGG 2 cut(s) 2059, 2563
HhaI GCGC 1 cut(s) 251
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 1510
HindII GTYRAC 1 cut(s) 1510
HindIII AAGCTT 3 cut(s) 1074, 2181, 2414
HinfI GANTC 7 cut(s) 122, 403, 772, 799, 1047, 1697, 2126
HpaI GTTAAC 1 cut(s) 1510
HpaII CCGG 2 cut(s) 2059, 2563
HphI GGTGA 2 cut(s) 1376, 1786
Hpy188I TCNGA 2 cut(s) 674, 2164
Hpy188III TCNNGA 9 cut(s) 139, 407, 869, 1380, 1633, 1659, 2069, 2097, 2341
HpyAV CCTTC 6 cut(s) 442, 442, 494, 669, 1491, 1765
HpyCH4III ACNGT 8 cut(s) 319, 413, 638, 838, 972, 1086, 1141, 2281
HpyCH4IV ACGT 4 cut(s) 214, 222, 287, 709
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 1060, 1292, 1559, 1748, 2017, 2090, 2443
HpyF3I CTNAG 8 cut(s) 65, 306, 366, 588, 776, 842, 2394, 2438
HpySE526I ACGT 4 cut(s) 214, 222, 287, 709
HspAI GCGC 1 cut(s) 249
KroI GCCGGC 1 cut(s) 2058
KroNI GCCGGC 1 cut(s) 2060
Ksp22I TGATCA 3 cut(s) 1038, 1341, 1819
KspAI GTTAAC 1 cut(s) 1510
LguI GCTCTTC 1 cut(s) 2049
LmnI GCTCC 5 cut(s) 1111, 1183, 1194, 2403, 2597
Lsp1109I GCAGC 4 cut(s) 1198, 1566, 2014, 2421
MaeI CTAG 5 cut(s) 618, 894, 1529, 2081, 2177
MaeII ACGT 4 cut(s) 214, 222, 287, 709
MboII GAAGA 6 cut(s) 1478, 2036, 2344, 2356, 2363, 2471
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 606, 1954
MhlI GDGCHC 4 cut(s) 577, 682, 1065, 2044
MlsI TGGCCA 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 3 cut(s) 116, 781, 1056
MmeI TCCRAC 2 cut(s) 611, 1403
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 1056
MroNI GCCGGC 1 cut(s) 2058
MscI TGGCCA 1 cut(s) 99
MseI TTAA 7 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256
MslI CAYNNNNRTG 3 cut(s) 698, 888, 2406
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 2 cut(s) 2059, 2563
MspR9I CCNGG 5 cut(s) 325, 1163, 1514, 1990, 2235
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 2 cut(s) 1246, 1349
MvaI CCWGG 5 cut(s) 325, 1163, 1514, 1990, 2235
MvnI CGCG 2 cut(s) 251, 2070
MwoI GCNNNNNNNGC 8 cut(s) 50, 1060, 1292, 1559, 1748, 2017, 2090, 2443
NaeI GCCGGC 1 cut(s) 2060
NcoI CCATGG 1 cut(s) 1192
NdeI CATATG 1 cut(s) 687
NgoMIV GCCGGC 1 cut(s) 2058
NlaIV GGNNCC 3 cut(s) 608, 912, 1107
NmuCI GTSAC 5 cut(s) 24, 266, 407, 467, 2498
NruI TCGCGA 1 cut(s) 2070
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 7 cut(s) 19, 160, 852, 893, 1172, 1932, 2273
PaeI GCATGC 1 cut(s) 893
PagI TCATGA 1 cut(s) 1632
PaqCI CACCTGC 1 cut(s) 979
PciI ACATGT 3 cut(s) 156, 1928, 2269
PciSI GCTCTTC 1 cut(s) 2049
PctI GAATGC 2 cut(s) 1246, 1349
PdiI GCCGGC 1 cut(s) 2060
PfeI GAWTC 4 cut(s) 403, 799, 1697, 2126
PflFI GACNNNGTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 2562
PkrI GCNGC 4 cut(s) 1188, 1581, 2029, 2436
PleI GAGTC 3 cut(s) 116, 780, 1055
PpsI GAGTC 3 cut(s) 116, 780, 1055
PscI ACATGT 3 cut(s) 156, 1928, 2269
PshAI GACNNNNGTC 1 cut(s) 264
PsiI TTATAA 1 cut(s) 2076
Psp6I CCWGG 5 cut(s) 323, 1161, 1512, 1988, 2233
PspFI CCCAGC 1 cut(s) 1970
PspGI CCWGG 5 cut(s) 323, 1161, 1512, 1988, 2233
PspN4I GGNNCC 3 cut(s) 608, 912, 1107
PspPI GGNCC 2 cut(s) 481, 1471
PstI CTGCAG 1 cut(s) 1584
PstNI CAGNNNCTG 1 cut(s) 1548
PsuI RGATCY 2 cut(s) 606, 1954
PsyI GACNNNGTC 1 cut(s) 317
RruI TCGCGA 1 cut(s) 2070
RsaI GTAC 5 cut(s) 161, 560, 840, 1083, 2268
RsaNI GTAC 5 cut(s) 160, 559, 839, 1082, 2267
RseI CAYNNNNRTG 3 cut(s) 698, 888, 2406
SapI GCTCTTC 1 cut(s) 2049
SaqAI TTAA 7 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256
SatI GCNGC 4 cut(s) 1187, 1580, 2028, 2435
Sau96I GGNCC 2 cut(s) 481, 1471
ScaI AGTACT 1 cut(s) 1083
SchI GAGTC 3 cut(s) 116, 781, 1056
ScrFI CCNGG 5 cut(s) 325, 1163, 1514, 1990, 2235
SduI GDGCHC 4 cut(s) 577, 682, 1065, 2044
SfcI CTRYAG 4 cut(s) 111, 1233, 1580, 2239
SmiMI CAYNNNNRTG 3 cut(s) 698, 888, 2406
SmlI CTYRAG 2 cut(s) 1593, 2533
SmoI CTYRAG 2 cut(s) 1593, 2533
SpeI ACTAGT 1 cut(s) 1528
SphI GCATGC 1 cut(s) 893
SsiI CCGC 2 cut(s) 939, 2551
SspI AATATT 2 cut(s) 1388, 1566
SspMI CTAG 5 cut(s) 618, 894, 1529, 2081, 2177
StyD4I CCNGG 5 cut(s) 323, 1161, 1512, 1988, 2233
StyI CCWWGG 2 cut(s) 463, 1192
TaaI ACNGT 8 cut(s) 319, 413, 638, 838, 972, 1086, 1141, 2281
TaiI ACGT 4 cut(s) 217, 225, 290, 712
TaqI TCGA 4 cut(s) 71, 580, 1966, 2482
TaqII GACCGA 1 cut(s) 1919
TatI WGTACW 4 cut(s) 159, 558, 838, 1081
TfiI GAWTC 4 cut(s) 403, 799, 1697, 2126
Tru1I TTAA 7 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256
Tru9I TTAA 7 cut(s) 378, 474, 1089, 1490, 1509, 2016, 2256
TscAI CASTG 4 cut(s) 841, 850, 1048, 1549
TseFI GTSAC 5 cut(s) 24, 266, 407, 467, 2498
TseI GCWGC 4 cut(s) 1186, 1579, 2027, 2434
Tsp45I GTSAC 5 cut(s) 24, 266, 407, 467, 2498
TspGWI ACGGA 3 cut(s) 893, 1889, 1997
TspRI CASTG 4 cut(s) 841, 850, 1048, 1549
Tth111I GACNNNGTC 1 cut(s) 317
VneI GTGCAC 1 cut(s) 573
XapI RAATTY 7 cut(s) 31, 195, 1714, 1729, 1993, 2087, 2101
XceI RCATGY 7 cut(s) 19, 160, 852, 893, 1172, 1932, 2273
XmiI GTMKAC 4 cut(s) 258, 499, 859, 1484
XspI CTAG 5 cut(s) 618, 894, 1529, 2081, 2177
ZrmI AGTACT 1 cut(s) 1083
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.