Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Forward (+)

2626416 .. 2641504

Gene Structure 15089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03330.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3087 bp

ATGGCCAATAATCCTCAATATTCAGGGTTACAGCCTCTTCGGCCTCCTATGGTAGGTCCCGTGGATCCTCCTCGAAGTATGCCGCCTATGGGGTTTCAATTCCGGCCAGTAGTTCCAGCACCTCATCCGCAGGAGTTCGTTCCTGTGGCTTCTCAAAATTTTCAGCATGTTGGAAGAGGTGTTCCACCAATGAATGTTAGACTGCCTCCTCCAGTTCACCAACCTCAGTTTCCACAACCAGTGCAGCAGTTACCTGCAAGATCTGGTCCACCAGGCCATGGTATGCTGCCACAGGCAATTCCCTTACCAGTTGCTCAGCCTATCAGGAACTTTGCACCTGAATTGCCTGTACCTCAGCCTAATGTGCTACCTCCAAATAACGTCATGTCTAACTTAAGTGCCCCACGGCCACCTCTTTCTTCATCATATACTTTTGCACCTCCTTATGGTCAAATGCCAAGAAGTTTTAATGATTCGAACCAGTACCAGTATGCACCAAATGTTTCATCTGAGGGACAAGTTAGGTTATCATCTGATAGCCAGTCTGCTGTTGCTCCTGTACCTTTGCAGCCCACCGGTGAACGACCTTCTGTCACCACTACGGTTGCTCAAGAAGCCAGCATCCAACCTATCTCTCTTGGAGGGAATCCAGCAGAGTGGATTGACCATAAATCTGCTGATGGAAGAAGGTTTTATTACAACAGGAGGACAAAATTATCTACTTGGGAGAAGCCTTTAGAATTGATGACACCACTGGAGAGGGCAGATGCATCAACTAACTGGAAGGAATTTACCAGTCCTGATGGAAAAAAGTATTTCCACAACAAGGTCACTAAAGAATCAAGATGGATTATACCTGAGGAACTGAAGTTGGCTCGGCAACAAGTGGAGAAGGGATCTGTCAAGGACATTCCTCAGGAGATGCCTGTAGTTCATCACTCCACAGTAACAGTTTCTCCCCCTGTAACTGAAGCTCACACATCAACCACTACTGCTCAAGTAGCATCAAGCCCTGCTTCGGTGGCACCTGTTGTTGCCACTAGTGATGTTCAAACTGCCATAGTTTCTAGATCATCTGCCTCACCTATGGTGTCTTCTCCTGTAAAAGAAAATGCTGATGGAGTTCGGATACCTGTTGTTACACCATGTTCTGATGCTTCTGAAAATGCTGAAGCTGCTGTAACAGTCAACAATGCCGCTGCAGAACTAATGGAAAATCCAAAGAAGTTACCAGCTCAGGAATTTGTTAGTTCCGAGGGAGCTCATTTACAGGAGAATAAGGAACCTACCAATGATGTGAGAGGAGAGAAAGCTAATGACATTGCAGAAGAAAAACCAATTGATCTGGAACCTATGAGTTATTCAAATAAGCTGGAAGCTAAAGATGCATTTAAAGCACTCTTGGAGTCTACAAACATTGGGTCTGATTGGACTTGGGATCGGGCCATGAGAGTGATAATTAATGACAAAAGATATGGTGTTCTGAAAACACTTGGAGAGCGGAAGCAAGCTTTTAATGAGTTTGTGGGCCAAAGGAAAAAACAGGAGGTTGAGGAAAGGCGAATCAAGCAGAAAAAAGCACGTGAAGAGTTTACAAAGATGTTGGAAGAATGCTCAGAGTTAACATCATCCACAAGATGGGGCAAATTAGAGAGCTTATTTGAGAATGATGAACGTTTCAAAGCAGTCGAAAGAGATAGAGACCGCAGGGATTTGTTTGATAGCTATCTGGAGGAACTTCAGAAGAAAGAAAGAGCAAAGGCACAGGAGGAACGTAAGCTCCATATAGTGGAGTACAGACAATTCTTGGAATCTTGTGACTTCATCAAGGCAAGCAGCCAGTGGCGAAAGGTTCAAGATCGCTTAGAGGCAGACGAACGGTGCTCACGTCTTGAAAAAATTGATCGTTTGGAAATTTTCCAGGAATATCTACGTGATCTAGAGAAGGAAGAGGAAGAGCAGAGGAGGATACAGAAGGAAGAAATAAGAAAGGCAGAACGTAAAAACCGTGATGAGTTCCGCAAAGTGATGGAAGAACATATTGCTGCAGGCGCTCTTACAGCTACAACTCACTGGCGAGATTACATCCTGATGGTTAAAGATCTACCTGCATATATGGCAGTGGCATCAAACAGCTCTGGTTCAACTCCAAAAGATTTATTTGAAGATGTTATTGAAGAGCTGGAGAAACAATATCAAAGTGACAGAGTTCGAATAAAAGACGTGGTGAAGTCTGGAAAGATTGTGCTTTCATCAACCTGGGACCTTGAAGCCTTCAAAACTGCTGTATCGAATGATATTGGCTCTCCATCCATATCAGATGCAAACTTAATGGTAGTATTTGAGGAGTTAATGGAACGTGTGAGGGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTAAACGTCTTGCAGATGATTTCTTTCATTTCTTATCTTCTTTCAAGGAGATAACTCCATCTTCTAAATGGGAGAACTGTAAGTCACTTCTTGAAGTTAGTTCAGAGTACAGTGCTATTGGTGAAGAGAGCTCCTGCAAAGAGATATTCGATAAACACATCACGCAATTGAAAGAACAAGCAAAAGAGAAAGAGAGAAAACGAAAGGAAGAGAAGGAAAGGAGGGAAAAGGAGAGGGATGAAAGAGAGAGGAGAAGGTCGAAGCATAGAAGGGAAAGAGGGGCAGGATATGAAAAAGATAAAGAGGAACACCTTACAAAAGACGGAGAAGACACTGAAATTATTGACATAATGGAGGTTAATGATTCCAAAGAGAAAAGAAGATCAGGAAAAAATGATGATAAGAAACATAGGAAGAGGCATCAAAGTGATGAAGACCAAACAAATGGAAATGAGAACGATCGGTCTAAAAGGTCTCATGGATCTGGCAGTGACCACAAGAGATCAAGACGGGCATCTGGTCCTGAATCAGATACTGAAAGCAGACACCGTAGACATAAAAGAGATCACCGCAGTGGTTCTCGTAGAAGTGGTGATCATGACGAGCTAGAAGATGGGGAATTTGGAGATGTTGGGGAAAGTCGGTTTGTCAACGCGTATGTTTATCAGTCCGTGACCAAATGTGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

1029

Amino Acids

117.49

Weight (kDa)

6.64

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	280 - 308	1.9e-08	WW domain
WW	PF00397	323 - 349	8.1e-08	WW domain
FF	PF01846	522 - 571	6.1e-16	FF domain
FF	PF01846	589 - 639	2.7e-13	FF domain
FF	PF01846	731 - 786	6.3e-06	FF domain
FF_PRPF40A	PF25432	794 - 853	1.1e-18	PRPF40A-like, FF domain
FF	PF01846	867 - 914	3.9e-06	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	262, 2116
AccB1I	GGYRCC	1 cut(s)	1024
AccB7I	CCANNNNNTGG	3 cut(s)	278, 1638, 1789
AccBSI	CCGCTC	1 cut(s)	1501
AccI	GTMKAC	2 cut(s)	1409, 2947
AccII	CGCG	1 cut(s)	3050
AciI	CCGC	7 cut(s)	83, 128, 1197, 1501, 1705, 2020, 2965
AclI	AACGTT	1 cut(s)	1675
AclWI	GGATC	5 cut(s)	59, 72, 904, 1446, 2884
AcoI	YGGCCR	3 cut(s)	3, 104, 407
AcsI	RAATTY	5 cut(s)	157, 788, 1241, 1914, 3014
AcuI	CTGAAG	4 cut(s)	887, 990, 1191, 1724
AcvI	CACGTG	1 cut(s)	1583
AfaI	GTAC	5 cut(s)	351, 485, 561, 1796, 2504
AfiI	CCNNNNNNNGG	8 cut(s)	53, 89, 278, 446, 826, 1018, 1638, 1789
AflII	CTTAAG	1 cut(s)	394
AflIII	ACRYGT	2 cut(s)	2359, 3048
AgeI	ACCGGT	1 cut(s)	575
AhdI	GACNNNNNGTC	1 cut(s)	590
AhlI	ACTAGT	1 cut(s)	1040
AjiI	CACGTC	2 cut(s)	1889, 2224
AjnI	CCWGG	3 cut(s)	271, 1920, 2258
AjuI	GAANNNNNNNTTGG	3 cut(s)	213, 245, 3065
AleI	CACNNNNGTG	1 cut(s)	2967
AloI	GAACNNNNNNTCC	4 cut(s)	165, 197, 1764, 1796
Alw21I	GWGCWC	3 cut(s)	1264, 1886, 2528
Alw26I	GTCTC	2 cut(s)	1695, 2874
AlwI	GGATC	5 cut(s)	59, 72, 904, 1446, 2884
AlwNI	CAGNNNCTG	1 cut(s)	2930
AoxI	GGCC	7 cut(s)	3, 41, 104, 274, 407, 1443, 1528
ApeKI	GCWGC	7 cut(s)	244, 286, 568, 1175, 1199, 1836, 2045
ApoI	RAATTY	5 cut(s)	157, 788, 1241, 1914, 3014
ArsI	GACNNNNNNTTYG	2 cut(s)	1406, 1438
AseI	ATTAAT	1 cut(s)	1461
AsiGI	ACCGGT	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	2054
AspS9I	GGNCC	6 cut(s)	56, 266, 1443, 1528, 2263, 2915
AsuHPI	GGTGA	8 cut(s)	209, 586, 590, 1074, 2239, 2528, 2954, 2999
AsuII	TTCGAA	2 cut(s)	476, 2212
AvaII	GGWCC	4 cut(s)	56, 266, 2263, 2915
AxyI	CCTNAGG	2 cut(s)	858, 915
BaeGI	GKGCMC	1 cut(s)	403
BaeI	ACNNNNGTAYC	2 cut(s)	2271, 2304
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	1024
BanII	GRGCYC	2 cut(s)	1264, 2528
BbrPI	CACGTG	1 cut(s)	1583
BbsI	GAAGAC	3 cut(s)	1086, 2730, 2835
Bbv12I	GWGCWC	3 cut(s)	1264, 1886, 2528
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	7 cut(s)	256, 273, 580, 1162, 1186, 1848, 2032
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	3 cut(s)	273, 1922, 2260
BciVI	GTATCC	2 cut(s)	1122, 1962
BclI	TGATCA	1 cut(s)	2989
BcoDI	GTCTC	2 cut(s)	1695, 2874
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	5 cut(s)	1041, 1068, 1940, 3002, 3085
BfmI	CTRYAG	3 cut(s)	927, 1200, 2046
BfoI	RGCGCY	1 cut(s)	2055
BfrI	CTTAAG	1 cut(s)	394
BfuAI	ACCTGC	2 cut(s)	262, 2116
BfuI	GTATCC	2 cut(s)	1122, 1962
BglI	GCCNNNNNGGC	1 cut(s)	40
BglII	AGATCT	2 cut(s)	260, 2101
BisI	GCNGC	9 cut(s)	83, 245, 287, 569, 1176, 1197, 1200, 1837, 2046
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	9 cut(s)	84, 246, 288, 570, 1177, 1198, 1201, 1838, 2047
Bme1390I	CCNGG	3 cut(s)	273, 1922, 2260
Bme18I	GGWCC	4 cut(s)	56, 266, 2263, 2915
BmeRI	GACNNNNNGTC	1 cut(s)	590
BmgBI	CACGTC	2 cut(s)	1889, 2224
BmgT120I	GGNCC	6 cut(s)	56, 266, 1443, 1528, 2263, 2915
BmiI	GGNNCC	6 cut(s)	58, 66, 1026, 1284, 1350, 2264
BmrFI	CCNGG	3 cut(s)	273, 1922, 2260
BpiI	GAAGAC	3 cut(s)	1086, 2730, 2835
BpmI	CTGGAG	4 cut(s)	195, 776, 1751, 2204
Bpu10I	CCTNAGC	2 cut(s)	354, 1236
Bpu1102I	GCTNAGC	1 cut(s)	315
Bpu14I	TTCGAA	2 cut(s)	476, 2212
BpuEI	CTTGAG	2 cut(s)	594, 981
BsaAI	YACGTR	2 cut(s)	1583, 1934
BsaBI	GATNNNNATC	1 cut(s)	1725
BsaI	GGTCTC	2 cut(s)	1695, 2874
BsaJI	CCNNGG	5 cut(s)	60, 277, 404, 1254, 2259
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	940, 970, 1764, 1794
Bsc4I	CCNNNNNNNGG	8 cut(s)	53, 89, 278, 446, 826, 1018, 1638, 1789
Bse118I	RCCGGY	1 cut(s)	575
Bse21I	CCTNAGG	2 cut(s)	858, 915
Bse3DI	GCAATG	1 cut(s)	1320
Bse8I	GATNNNNATC	1 cut(s)	1725
BseBI	CCWGG	3 cut(s)	273, 1922, 2260
BseDI	CCNNGG	5 cut(s)	60, 277, 404, 1254, 2259
BseGI	GGATG	6 cut(s)	124, 621, 1628, 2085, 2309, 2638
BseJI	GATNNNNATC	1 cut(s)	1725
BseLI	CCNNNNNNNGG	8 cut(s)	53, 89, 278, 446, 826, 1018, 1638, 1789
BseMI	GCAATG	1 cut(s)	1320
BseMII	CTCAG	8 cut(s)	239, 329, 368, 501, 849, 929, 1250, 1629
BseRI	GAGGAG	7 cut(s)	60, 198, 1317, 1978, 2360, 2390, 2659
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	7 cut(s)	256, 273, 580, 1162, 1186, 1848, 2032
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	3050
Bsh1285I	CGRYCG	1 cut(s)	2857
BshFI	GGCC	7 cut(s)	5, 43, 106, 276, 409, 1445, 1530
BshNI	GGYRCC	1 cut(s)	1024
BshTI	ACCGGT	1 cut(s)	575
BsiEI	CGRYCG	1 cut(s)	2857
BsiHKAI	GWGCWC	3 cut(s)	1264, 1886, 2528
BsiSI	CCGG	2 cut(s)	103, 576
BslFI	GGGAC	3 cut(s)	42, 528, 2276
BslI	CCNNNNNNNGG	8 cut(s)	53, 89, 278, 446, 826, 1018, 1638, 1789
BsmAI	GTCTC	2 cut(s)	1695, 2874
BsmFI	GGGAC	3 cut(s)	42, 528, 2276
BsmI	GAATGC	1 cut(s)	1616
BsnI	GGCC	7 cut(s)	5, 43, 106, 276, 409, 1445, 1530
Bso31I	GGTCTC	2 cut(s)	1695, 2874
Bsp119I	TTCGAA	2 cut(s)	476, 2212
Bsp1286I	GDGCHC	4 cut(s)	403, 1264, 1886, 2528
Bsp1720I	GCTNAGC	1 cut(s)	315
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	7 cut(s)	83, 128, 1197, 1501, 1705, 2020, 2965
BspANI	GGCC	7 cut(s)	5, 43, 106, 276, 409, 1445, 1530
BspCNI	CTCAG	8 cut(s)	238, 328, 367, 502, 850, 928, 1249, 1628
BspFNI	CGCG	1 cut(s)	3050
BspHI	TCATGA	1 cut(s)	2992
BspLI	GGNNCC	6 cut(s)	58, 66, 1026, 1284, 1350, 2264
BspMAI	CTGCAG	2 cut(s)	1204, 2050
BspMI	ACCTGC	2 cut(s)	262, 2116
BspPI	GGATC	5 cut(s)	59, 72, 904, 1446, 2884
BspQI	GCTCTTC	2 cut(s)	1950, 2172
BspT104I	TTCGAA	2 cut(s)	476, 2212
BspT107I	GGYRCC	1 cut(s)	1024
BspTI	CTTAAG	1 cut(s)	394
BspTNI	GGTCTC	2 cut(s)	1695, 2874
BsrBI	CCGCTC	1 cut(s)	1501
BsrDI	GCAATG	1 cut(s)	1320
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	5 cut(s)	60, 277, 404, 1254, 2259
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	3 cut(s)	273, 1922, 2260
Bst4CI	ACNGT	9 cut(s)	604, 946, 952, 1186, 1881, 2009, 2474, 2507, 2945
Bst6I	CTCTTC	9 cut(s)	42, 169, 1581, 1944, 1950, 2172, 2514, 2598, 2804
BstAFI	CTTAAG	1 cut(s)	394
BstBAI	YACGTR	2 cut(s)	1583, 1934
BstBI	TTCGAA	2 cut(s)	476, 2212
BstC8I	GCNNGC	4 cut(s)	619, 1509, 1834, 2050
BstDEI	CTNAG	9 cut(s)	225, 315, 354, 510, 858, 915, 1236, 1615, 1864
BstDSI	CCRYGG	3 cut(s)	60, 277, 404
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	6 cut(s)	124, 621, 1628, 2085, 2309, 2638
BstFNI	CGCG	1 cut(s)	3050
BstH2I	RGCGCY	1 cut(s)	2055
BstHHI	GCGC	1 cut(s)	2054
BstMAI	GTCTC	2 cut(s)	1695, 2874
BstMCI	CGRYCG	1 cut(s)	2857
BstNI	CCWGG	3 cut(s)	273, 1922, 2260
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	271, 1920, 2258
BstSFI	CTRYAG	3 cut(s)	927, 1200, 2046
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	3050
BstV1I	GCAGC	7 cut(s)	256, 273, 580, 1162, 1186, 1848, 2032
BstV2I	GAAGAC	3 cut(s)	1086, 2730, 2835
BstX2I	RGATCY	5 cut(s)	64, 260, 896, 2101, 2876
BstXI	CCANNNNNNTGG	2 cut(s)	657, 2840
BstYI	RGATCY	5 cut(s)	64, 260, 896, 2101, 2876
Bsu36I	CCTNAGG	2 cut(s)	858, 915
BsuI	GTATCC	2 cut(s)	1122, 1962
BsuRI	GGCC	7 cut(s)	5, 43, 106, 276, 409, 1445, 1530
BtgI	CCRYGG	3 cut(s)	60, 277, 404
BtrI	CACGTC	2 cut(s)	1889, 2224
BtsCI	GGATG	6 cut(s)	124, 621, 1628, 2085, 2309, 2638
BtsI	GCAGTG	3 cut(s)	2127, 2890, 2974
BtsIMutI	CAGTG	9 cut(s)	246, 752, 1847, 2071, 2127, 2512, 2727, 2890, 2974
BveI	ACCTGC	2 cut(s)	262, 2116
Cac8I	GCNNGC	4 cut(s)	619, 1509, 1834, 2050
CaiI	CAGNNNCTG	1 cut(s)	2930
CciI	TCATGA	1 cut(s)	2992
CfoI	GCGC	1 cut(s)	2054
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	6 cut(s)	56, 266, 1443, 1528, 2263, 2915
Csp6I	GTAC	5 cut(s)	350, 484, 560, 1795, 2503
CspAI	ACCGGT	1 cut(s)	575
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	7 cut(s)	167, 278, 385, 1146, 1447, 2873, 2993
CviQI	GTAC	5 cut(s)	350, 484, 560, 1795, 2503
DdeI	CTNAG	9 cut(s)	225, 315, 354, 510, 858, 915, 1236, 1615, 1864
DraI	TTTAAA	1 cut(s)	1393
DriI	GACNNNNNGTC	1 cut(s)	590
EaeI	YGGCCR	3 cut(s)	3, 104, 407
Eam1104I	CTCTTC	9 cut(s)	42, 169, 1581, 1944, 1950, 2172, 2514, 2598, 2804
Eam1105I	GACNNNNNGTC	1 cut(s)	590
EarI	CTCTTC	9 cut(s)	42, 169, 1581, 1944, 1950, 2172, 2514, 2598, 2804
Ecl136II	GAGCTC	2 cut(s)	1262, 2526
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	1264, 2528
Eco31I	GGTCTC	2 cut(s)	1695, 2874
Eco47I	GGWCC	4 cut(s)	56, 266, 2263, 2915
Eco53kI	GAGCTC	2 cut(s)	1262, 2526
Eco57I	CTGAAG	4 cut(s)	887, 990, 1191, 1724
Eco72I	CACGTG	1 cut(s)	1583
Eco81I	CCTNAGG	2 cut(s)	858, 915
EcoICRI	GAGCTC	2 cut(s)	1262, 2526
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	2 cut(s)	56, 2263
EcoRII	CCWGG	3 cut(s)	271, 1920, 2258
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	2 cut(s)	772, 1390
EcoT38I	GRGCYC	2 cut(s)	1264, 2528
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	7 cut(s)	170, 281, 388, 1149, 1450, 2876, 2996
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	3 cut(s)	42, 528, 2276
FatI	CATG	7 cut(s)	166, 277, 384, 1145, 1446, 2872, 2992
FbaI	TGATCA	1 cut(s)	2989
FblI	GTMKAC	2 cut(s)	1409, 2947
Fnu4HI	GCNGC	9 cut(s)	83, 245, 287, 569, 1176, 1197, 1200, 1837, 2046
FokI	GGATG	6 cut(s)	111, 608, 1615, 2072, 2296, 2645
FriOI	GRGCYC	2 cut(s)	1264, 2528
Fsp4HI	GCNGC	9 cut(s)	83, 245, 287, 569, 1176, 1197, 1200, 1837, 2046
FspBI	CTAG	5 cut(s)	1041, 1068, 1940, 3002, 3085
GlaI	GCGC	1 cut(s)	2053
GluI	GCNGC	9 cut(s)	83, 245, 287, 569, 1176, 1197, 1200, 1837, 2046
GsuI	CTGGAG	4 cut(s)	195, 776, 1751, 2204
HaeII	RGCGCY	1 cut(s)	2055
HaeIII	GGCC	7 cut(s)	5, 43, 106, 276, 409, 1445, 1530
HapII	CCGG	2 cut(s)	103, 576
HhaI	GCGC	1 cut(s)	2054
Hin1II	CATG	7 cut(s)	170, 281, 388, 1149, 1450, 2876, 2996
Hin6I	GCGC	1 cut(s)	2052
HinP1I	GCGC	1 cut(s)	2052
HincII	GTYRAC	3 cut(s)	1189, 1623, 3046
HindII	GTYRAC	3 cut(s)	1189, 1623, 3046
HindIII	AAGCTT	1 cut(s)	1509
HinfI	GANTC	8 cut(s)	473, 646, 839, 1406, 1563, 1811, 2759, 2921
HpaI	GTTAAC	1 cut(s)	1623
HpaII	CCGG	2 cut(s)	103, 576
HphI	GGTGA	8 cut(s)	209, 586, 590, 1074, 2239, 2528, 2954, 2999
HpyCH4III	ACNGT	9 cut(s)	604, 946, 952, 1186, 1881, 2009, 2474, 2507, 2945
HpyF3I	CTNAG	9 cut(s)	225, 315, 354, 510, 858, 915, 1236, 1615, 1864
Hsp92II	CATG	7 cut(s)	170, 281, 388, 1149, 1450, 2876, 2996
HspAI	GCGC	1 cut(s)	2052
Ksp22I	TGATCA	1 cut(s)	2989
KspAI	GTTAAC	1 cut(s)	1623
LguI	GCTCTTC	2 cut(s)	1950, 2172
LmnI	GCTCC	4 cut(s)	559, 1259, 1785, 2531
Lsp1109I	GCAGC	7 cut(s)	256, 273, 580, 1162, 1186, 1848, 2032
MaeI	CTAG	5 cut(s)	1041, 1068, 1940, 3002, 3085
MbiI	CCGCTC	1 cut(s)	1501
MfeI	CAATTG	2 cut(s)	1338, 2561
MflI	RGATCY	5 cut(s)	64, 260, 896, 2101, 2876
MhlI	GDGCHC	4 cut(s)	403, 1264, 1886, 2528
MlsI	TGGCCA	1 cut(s)	5
MluI	ACGCGT	1 cut(s)	3048
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1415
MmeI	TCCRAC	3 cut(s)	151, 649, 1584
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	772, 1390
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	4 cut(s)	1451, 2090, 2820, 2967
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1199
MspCI	CTTAAG	1 cut(s)	394
MspI	CCGG	2 cut(s)	103, 576
MspR9I	CCNGG	3 cut(s)	273, 1922, 2260
MunI	CAATTG	2 cut(s)	1338, 2561
Mva1269I	GAATGC	1 cut(s)	1616
MvaI	CCWGG	3 cut(s)	273, 1922, 2260
MvnI	CGCG	1 cut(s)	3050
NcoI	CCATGG	1 cut(s)	277
NlaIII	CATG	7 cut(s)	170, 281, 388, 1149, 1450, 2876, 2996
NlaIV	GGNNCC	6 cut(s)	58, 66, 1026, 1284, 1350, 2264
NmeAIII	GCCGAG	1 cut(s)	856
NmuCI	GTSAC	7 cut(s)	592, 829, 1817, 2201, 2478, 2885, 3067
NsiI	ATGCAT	2 cut(s)	772, 1390
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	2 cut(s)	476, 2212
OliI	CACNNNNGTG	1 cut(s)	2967
PagI	TCATGA	1 cut(s)	2992
PciSI	GCTCTTC	2 cut(s)	1950, 2172
PcsI	WCGNNNNNNNCGW	2 cut(s)	1885, 2005
PctI	GAATGC	1 cut(s)	1616
PfeI	GAWTC	7 cut(s)	473, 646, 839, 1563, 1811, 2759, 2921
PflMI	CCANNNNNTGG	3 cut(s)	278, 1638, 1789
PfoI	TCCNGGA	1 cut(s)	1920
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	9 cut(s)	84, 246, 288, 570, 1177, 1198, 1201, 1838, 2047
Ple19I	CGATCG	1 cut(s)	2857
PleI	GAGTC	1 cut(s)	1414
PmaCI	CACGTG	1 cut(s)	1583
PmlI	CACGTG	1 cut(s)	1583
PpsI	GAGTC	1 cut(s)	1414
Ppu21I	YACGTR	2 cut(s)	1583, 1934
PpuMI	RGGWCCY	2 cut(s)	56, 2263
PshBI	ATTAAT	1 cut(s)	1461
Psp124BI	GAGCTC	2 cut(s)	1264, 2528
Psp1406I	AACGTT	1 cut(s)	1675
Psp5II	RGGWCCY	2 cut(s)	56, 2263
Psp6I	CCWGG	3 cut(s)	271, 1920, 2258
PspCI	CACGTG	1 cut(s)	1583
PspGI	CCWGG	3 cut(s)	271, 1920, 2258
PspN4I	GGNNCC	6 cut(s)	58, 66, 1026, 1284, 1350, 2264
PspPI	GGNCC	6 cut(s)	56, 266, 1443, 1528, 2263, 2915
PspPPI	RGGWCCY	2 cut(s)	56, 2263
PstI	CTGCAG	2 cut(s)	1204, 2050
PstNI	CAGNNNCTG	1 cut(s)	2930
PsuI	RGATCY	5 cut(s)	64, 260, 896, 2101, 2876
PvuI	CGATCG	1 cut(s)	2857
RsaI	GTAC	5 cut(s)	351, 485, 561, 1796, 2504
RsaNI	GTAC	5 cut(s)	350, 484, 560, 1795, 2503
RseI	CAYNNNNRTG	4 cut(s)	1451, 2090, 2820, 2967
SacI	GAGCTC	2 cut(s)	1264, 2528
SapI	GCTCTTC	2 cut(s)	1950, 2172
SatI	GCNGC	9 cut(s)	83, 245, 287, 569, 1176, 1197, 1200, 1837, 2046
Sau96I	GGNCC	6 cut(s)	56, 266, 1443, 1528, 2263, 2915
SchI	GAGTC	1 cut(s)	1415
ScrFI	CCNGG	3 cut(s)	273, 1922, 2260
SduI	GDGCHC	4 cut(s)	403, 1264, 1886, 2528
SfcI	CTRYAG	3 cut(s)	927, 1200, 2046
SfuI	TTCGAA	2 cut(s)	476, 2212
SgrAI	CRCCGGYG	1 cut(s)	575
SinI	GGWCC	4 cut(s)	56, 266, 2263, 2915
SmiMI	CAYNNNNRTG	4 cut(s)	1451, 2090, 2820, 2967
SmlI	CTYRAG	3 cut(s)	394, 609, 996
SmoI	CTYRAG	3 cut(s)	394, 609, 996
SpeI	ACTAGT	1 cut(s)	1040
SsiI	CCGC	7 cut(s)	83, 128, 1197, 1501, 1705, 2020, 2965
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	5 cut(s)	1041, 1068, 1940, 3002, 3085
SstI	GAGCTC	2 cut(s)	1264, 2528
StyD4I	CCNGG	3 cut(s)	271, 1920, 2258
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	9 cut(s)	604, 946, 952, 1186, 1881, 2009, 2474, 2507, 2945
TaqI	TCGA	7 cut(s)	73, 476, 1689, 2212, 2291, 2544, 2654
TaqII	GACCGA	1 cut(s)	2847
TatI	WGTACW	2 cut(s)	1794, 2502
TauI	GCSGC	2 cut(s)	85, 1199
TfiI	GAWTC	7 cut(s)	473, 646, 839, 1563, 1811, 2759, 2921
TscAI	CASTG	9 cut(s)	246, 759, 1847, 2078, 2127, 2512, 2734, 2890, 2974
TseFI	GTSAC	7 cut(s)	592, 829, 1817, 2201, 2478, 2885, 3067
TseI	GCWGC	7 cut(s)	244, 286, 568, 1175, 1199, 1836, 2045
Tsp45I	GTSAC	7 cut(s)	592, 829, 1817, 2201, 2478, 2885, 3067
TspGWI	ACGGA	2 cut(s)	2733, 3055
TspRI	CASTG	9 cut(s)	246, 759, 1847, 2078, 2127, 2512, 2734, 2890, 2974
Van91I	CCANNNNNTGG	3 cut(s)	278, 1638, 1789
Vha464I	CTTAAG	1 cut(s)	394
VpaK11BI	GGWCC	4 cut(s)	56, 266, 2263, 2915
VspI	ATTAAT	1 cut(s)	1461
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	5 cut(s)	157, 788, 1241, 1914, 3014
XbaI	TCTAGA	2 cut(s)	1067, 1939
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2460
XmiI	GTMKAC	2 cut(s)	1409, 2947
XspI	CTAG	5 cut(s)	1041, 1068, 1940, 3002, 3085
Zsp2I	ATGCAT	2 cut(s)	772, 1390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.