Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Forward (+)

3839919 .. 3853738

Gene Structure 13820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG036900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3021 bp

ATGGTTGGTCCTGTGGATGCTCCTCGAAGTATGCCGCCCATGGGTTTTCAATTCCGGCCAGTAGTTCCAGCACCTCATTCGCAGGAGTTCATTCCTGTGGCTTCTCAAAATTTTCAGCATGTCGGAAGAGGTGTTCCACCAATGAATGTTAGACTGCCTCCTCCAATTCACCAACCTCAGTTTCCGCAACCAGTGCAGCAGTTACCTCCAAGATCTGGTCCACCAGGCCATGGTATGCTGCCACAGGCAATTCCCTTACCAGTTGCTCAGCCCATCAGGAACTTTGCACCTGAATTGCCTGTACCTCAGCCTAATGTGCTACCTCCAAATAATGTCATGTCTAACTTAAGTGCCCCACGGCCGCCTCTTTCTTCATCATATACTTTTGCAGCTTCTTCTTATGGTCAAATTCCAAGAAGTTTTAATGACTCGAACCAGTATCAGTCTATATCTCAATTGCATGCACCAAATGTTTCATCCGAGGGACAAGTTAGGTTATCATCTGATAGCCAGTCTGCTGTTGCTCCTGTACCTTTGCAGCCCACTGGTGAACGACCTTCTGTCACCACTTCAGTTGCTCCAGAAGCCAGCATCCAACCTATCTCTCTTGGAGGGAATCCAGCAGAGTGGATTGACCATAAATCTGCTGATGGAAGAAGGTTTTATTACAACAGGAGGACACGATTATCTACTTGGGAGAAGCCTTTTGAATTGATGACACCACTGGAGAGGGCAGATGCATCAACTAACTGGAAGGAATTTACCAGTCCTGATGGAAAAAAGTATTTCCACAACAAGGTCACTAAAGAATCAAGATGGACTATACCTGAGGAACTGAAGTTGGCCCGGCAACAAGTGGAGAAGGCATCGGTCAAGGACATTCCTCAGGAGATGCCTGTAAATCATCACGCCACAGTATCAGTTTCTCCCCCTGTAAGTGAAGCTCATACATCAACCACTACTGCTCAGGTAGCATCAAGCCCTGTTTCGGTGGCACCTGTTGTTGCCACTAGTGATGTTCAAACTTCCACAGTTTCAAGATCATCTGCCTCACCTGTTGTGGCTTCTCCTGTAAAAGAAAATGCTGATGGAGTTCAGATACCTGTTGTTACACCATTTTCTGATGCTTTTGAAAATGCTGAAGCTGCTGTCACAGTCAACAATACTGCTGCAGAACTAATGGAAGATCCAAAGAATTTACCAACTCAGGAATTTGTTAATTCTTCCGAGGAAGTTCATGTACAGGAGAATAAGGAACCTACAAATGATGTGACAGGAGAGAAAATTAATGACATTGCATCAGAAGAAAAACCAATTGATCCAGAACCCATAAGTTATTCAAATAAGCTGGAAGCTAAAGATGCATTTAAAGCACTCTTGGAGTCTACCAACATTGGGTCTGATTGGACTTGGGATCGGGCCATGAGAGTGATAATTAATGACAAAAGATATGGTGCTTTGAAAACACTTGGAGAGCGGAAGCAAGCTTTTAATGAGTTTGTGGCCCAAAGGAAAAAACAGGAGGTTGAGGAGAGGCGGATCAAGCAGAAAAAAGCACGTGAAGATTTTACAAAGATGTTGGAAGAATGCTCAGAGTTAACATCATCCACAAGATGGGGCAAATTAGAGAGCATATTTGAAAATGATGAACGTTTCAAAGCAGTTGAAAGAGAGAGAGACCGCAGGGATTTGTTTGATAGCTATTTGGAGGAACTTCAGAAGAAAGAAAGAGCAAAGGCACAGGAGGAACGTAAGCTCCATATAGTGGAGTACAGACAATTCTTGGAATCTTGTGACTTCATCAAGGCAAGCAGCCAGTGGCGAAAAGTTCAAGATCGCTTAGAGGCTGACGAACGGTGCTCACGTCTTGAAAAAATTGATCGTTTGGAAATTTTCCAGGAATATCTACGCGATCTAGAGAAGGAAGAGGAAGAGCAGAGGAGGATACAGAAGGAAGAATTGAGGAAGGCAGAACGTAAAAACCGTGATGAGTTCCGCAAATTGATGGATGAACATATTGCTGCAGGCACTCTTTCAGCTACAACTCACTGGCGAGATTACATCCTGAAGGTTAAAGATCTACCTGCATATGTAGCAGTGGTATCAAACACCTCTGGTTCAACTCCAAAAGATTTATTTGAAGATGTTATTGAAGAGCTAGAGAAGCAATATCAAAGTGACAAAATTCGAATAAAAGACGTGGTGAAGTCGGGAAAGATTGTGCTTTCATCAACCTGGGACCTTGAAGCCTTCAAAACTGCTATATCGAATGATATTGGCTCTCCACCCATATCAGATGCAAACTTAATGCTAGTATTTGAGGAGCTAATGGAACGCGTGAGGGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTAAACGTCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATGAAGGAGATAACTCCATCTTCTAAATGGGAGGACTGTAAATCACTTCTTGAAGTTAGTTCAGAGTACAGTGCTATTGGTGAAGAGAGCTCATGCAAGGAGATATTCGATAAACACATAATGCAATTGAAAGAACAAGCAAAAGAGAAAGAGAGAAAACGAAAGGAAGAGAAGGAGAGGAAGGAAAAGGACAGGGAAGAAAGAGAGAGGAGAAGGTCGAAGCAGAGAAGGGAAAGAGGGGTAGGATATGAAAGAGATAAAGAGGATCACCTTATGAAAGACGGAGAAGACACTGAAATTATTGACATAATGGAGGTTAATGATTCCAAAGAGAAAAGGAGATCAGGAAAAGACGATGATAAGAAACATAGGAAGAGGCATCAAAGTGATGAAGACCATCAAACAAATGGAAGTGAGAATGATCGGTCTAAAAGGTCTCATGGATCTAGCAGCGACCACAAGAGATCAAGACGGGCATCTGGTCCTGAATCAGATACCGAAAGCAGACACAGAAGACATAAGAGAGATCACCGCAATGGTTCTCGGAGAAGTGGTGATCATGAGGAGCTAGAAGATGGGGAATTTGGCGATGTTGGGGAAAGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

1006

Amino Acids

115.1

Weight (kDa)

6.15

Isoelectric Point (pI)

63.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	207 - 235	1.8e-08	WW domain
WW	PF00397	250 - 276	5.6e-08	WW domain
FF	PF01846	451 - 500	1.7e-16	FF domain
FF	PF01846	518 - 568	5.7e-14	FF domain
FF	PF01846	660 - 715	4.7e-08	FF domain
FF_PRPF40A	PF25432	723 - 782	7.3e-20	PRPF40A-like, FF domain
FF	PF01846	796 - 843	1.5e-08	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2092
AccB1I	GGYRCC	1 cut(s)	994
AccB7I	CCANNNNNTGG	4 cut(s)	215, 230, 1614, 1765
AccBSI	CCGCTC	1 cut(s)	1477
AccI	GTMKAC	1 cut(s)	1385
AccII	CGCG	2 cut(s)	1911, 2337
AciI	CCGC	8 cut(s)	35, 185, 362, 1477, 1537, 1681, 1996, 2944
AclI	AACGTT	1 cut(s)	1651
AclWI	GGATC	6 cut(s)	1181, 1313, 1422, 1547, 2685, 2863
AcoI	YGGCCR	2 cut(s)	56, 359
AcsI	RAATTY	8 cut(s)	109, 408, 758, 1195, 1211, 1890, 2184, 2993
AcuI	CTGAAG	5 cut(s)	555, 857, 1161, 1700, 2087
AcvI	CACGTG	1 cut(s)	1559
AfaI	GTAC	5 cut(s)	303, 531, 1242, 1772, 2480
AfiI	CCNNNNNNNGG	8 cut(s)	41, 215, 230, 796, 988, 1395, 1614, 1765
AflII	CTTAAG	1 cut(s)	346
AflIII	ACRYGT	1 cut(s)	2335
AhdI	GACNNNNNGTC	1 cut(s)	560
AhlI	ACTAGT	1 cut(s)	1010
AjiI	CACGTC	2 cut(s)	1865, 2200
AjnI	CCWGG	3 cut(s)	223, 1896, 2234
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AloI	GAACNNNNNNTCC	4 cut(s)	117, 149, 1740, 1772
Alw21I	GWGCWC	2 cut(s)	1862, 2504
Alw26I	GTCTC	2 cut(s)	1671, 2853
AlwI	GGATC	6 cut(s)	1181, 1313, 1422, 1547, 2685, 2863
AoxI	GGCC	6 cut(s)	56, 226, 359, 843, 1419, 1503
ApeKI	GCWGC	9 cut(s)	196, 238, 389, 538, 1145, 1169, 1812, 2021, 2862
ApoI	RAATTY	8 cut(s)	109, 408, 758, 1195, 1211, 1890, 2184, 2993
AseI	ATTAAT	2 cut(s)	1287, 1437
AspS9I	GGNCC	7 cut(s)	8, 218, 844, 1419, 1504, 2239, 2894
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	9 cut(s)	161, 556, 560, 1044, 2215, 2504, 2672, 2933, 2978
AsuII	TTCGAA	1 cut(s)	2188
AvaII	GGWCC	4 cut(s)	8, 218, 2239, 2894
AxyI	CCTNAGG	2 cut(s)	828, 885
BaeGI	GKGCMC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	994
BanII	GRGCYC	1 cut(s)	2504
BarI	GAAGNNNNNNTAC	2 cut(s)	1224, 1256
BbrPI	CACGTG	1 cut(s)	1559
BbsI	GAAGAC	3 cut(s)	2706, 2811, 2932
Bbv12I	GWGCWC	2 cut(s)	1862, 2504
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	9 cut(s)	208, 225, 401, 550, 1132, 1156, 1824, 2008, 2874
BceAI	ACGGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	3 cut(s)	225, 1898, 2236
BciVI	GTATCC	1 cut(s)	1938
BclI	TGATCA	1 cut(s)	2968
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	2 cut(s)	1671, 2853
BcuI	ACTAGT	1 cut(s)	1010
BfaI	CTAG	6 cut(s)	1011, 1916, 2159, 2312, 2859, 2981
BfmI	CTRYAG	2 cut(s)	1170, 2022
BfrI	CTTAAG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	2092
BfuI	GTATCC	1 cut(s)	1938
BglII	AGATCT	2 cut(s)	212, 2077
BlpI	GCTNAGC	1 cut(s)	267
Bme1390I	CCNGG	4 cut(s)	225, 847, 1898, 2236
Bme18I	GGWCC	4 cut(s)	8, 218, 2239, 2894
BmeRI	GACNNNNNGTC	1 cut(s)	560
BmgBI	CACGTC	2 cut(s)	1865, 2200
BmgT120I	GGNCC	7 cut(s)	8, 218, 844, 1419, 1504, 2239, 2894
BmiI	GGNNCC	3 cut(s)	996, 1257, 2240
BmrFI	CCNGG	4 cut(s)	225, 847, 1898, 2236
BpiI	GAAGAC	3 cut(s)	2706, 2811, 2932
BpmI	CTGGAG	2 cut(s)	564, 746
Bpu10I	CCTNAGC	2 cut(s)	306, 966
Bpu1102I	GCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	2188
BpuMI	CCSGG	1 cut(s)	847
BsaAI	YACGTR	1 cut(s)	1559
BsaI	GGTCTC	2 cut(s)	1671, 2853
BsaJI	CCNNGG	6 cut(s)	39, 229, 356, 480, 1227, 2235
BsaXI	ACNNNNNCTCC	4 cut(s)	1740, 1770, 2950, 2980
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 215, 230, 796, 988, 1395, 1614, 1765
Bse21I	CCTNAGG	2 cut(s)	828, 885
Bse3DI	GCAATG	2 cut(s)	1293, 2953
BseBI	CCWGG	3 cut(s)	225, 1898, 2236
BseDI	CCNNGG	6 cut(s)	39, 229, 356, 480, 1227, 2235
BseGI	GGATG	6 cut(s)	22, 476, 591, 1604, 2014, 2061
BseLI	CCNNNNNNNGG	8 cut(s)	41, 215, 230, 796, 988, 1395, 1614, 1765
BseMI	GCAATG	2 cut(s)	1293, 2953
BseMII	CTCAG	8 cut(s)	191, 281, 320, 819, 899, 980, 1220, 1605
BseRI	GAGGAG	8 cut(s)	12, 150, 1544, 1954, 2336, 2366, 2635, 2990
BseSI	GKGCMC	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	359
BseXI	GCAGC	9 cut(s)	208, 225, 401, 550, 1132, 1156, 1824, 2008, 2874
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	1911, 2337
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	6 cut(s)	58, 228, 361, 845, 1421, 1505
BshNI	GGYRCC	1 cut(s)	994
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	1862, 2504
BsiSI	CCGG	2 cut(s)	55, 847
BslFI	GGGAC	2 cut(s)	498, 2252
BslI	CCNNNNNNNGG	8 cut(s)	41, 215, 230, 796, 988, 1395, 1614, 1765
BsmAI	GTCTC	2 cut(s)	1671, 2853
BsmFI	GGGAC	2 cut(s)	498, 2252
BsmI	GAATGC	1 cut(s)	1592
BsnI	GGCC	6 cut(s)	58, 228, 361, 845, 1421, 1505
Bso31I	GGTCTC	2 cut(s)	1671, 2853
Bsp119I	TTCGAA	1 cut(s)	2188
Bsp1286I	GDGCHC	3 cut(s)	355, 1862, 2504
Bsp1407I	TGTACA	1 cut(s)	1240
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	2 cut(s)	39, 229
BspACI	CCGC	8 cut(s)	35, 185, 362, 1477, 1537, 1681, 1996, 2944
BspANI	GGCC	6 cut(s)	58, 228, 361, 845, 1421, 1505
BspCNI	CTCAG	8 cut(s)	190, 280, 319, 820, 898, 979, 1219, 1604
BspFNI	CGCG	2 cut(s)	1911, 2337
BspHI	TCATGA	1 cut(s)	2971
BspLI	GGNNCC	3 cut(s)	996, 1257, 2240
BspMAI	CTGCAG	2 cut(s)	1174, 2026
BspMI	ACCTGC	1 cut(s)	2092
BspPI	GGATC	6 cut(s)	1181, 1313, 1422, 1547, 2685, 2863
BspQI	GCTCTTC	2 cut(s)	1926, 2148
BspT104I	TTCGAA	1 cut(s)	2188
BspT107I	GGYRCC	1 cut(s)	994
BspTI	CTTAAG	1 cut(s)	346
BspTNI	GGTCTC	2 cut(s)	1671, 2853
BsrBI	CCGCTC	1 cut(s)	1477
BsrDI	GCAATG	2 cut(s)	1293, 2953
BsrGI	TGTACA	1 cut(s)	1240
BssECI	CCNNGG	6 cut(s)	39, 229, 356, 480, 1227, 2235
BssT1I	CCWWGG	2 cut(s)	39, 229
Bst2UI	CCWGG	3 cut(s)	225, 1898, 2236
Bst4CI	ACNGT	7 cut(s)	916, 1033, 1156, 1857, 1985, 2450, 2483
Bst6I	CTCTTC	7 cut(s)	121, 1920, 1926, 2148, 2490, 2574, 2780
BstAFI	CTTAAG	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	1240
BstBAI	YACGTR	1 cut(s)	1559
BstBI	TTCGAA	1 cut(s)	2188
BstC8I	GCNNGC	5 cut(s)	462, 589, 1485, 1810, 2026
BstDEI	CTNAG	9 cut(s)	177, 267, 306, 828, 885, 966, 1206, 1591, 1840
BstDSI	CCRYGG	3 cut(s)	39, 229, 356
BstF5I	GGATG	6 cut(s)	22, 476, 591, 1604, 2014, 2061
BstFNI	CGCG	2 cut(s)	1911, 2337
BstMAI	GTCTC	2 cut(s)	1671, 2853
BstMCI	CGRYCG	1 cut(s)	362
BstNI	CCWGG	3 cut(s)	225, 1898, 2236
BstNSI	RCATGY	2 cut(s)	122, 464
BstSCI	CCNGG	4 cut(s)	223, 845, 1896, 2234
BstSFI	CTRYAG	2 cut(s)	1170, 2022
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	2 cut(s)	1911, 2337
BstV1I	GCAGC	9 cut(s)	208, 225, 401, 550, 1132, 1156, 1824, 2008, 2874
BstV2I	GAAGAC	3 cut(s)	2706, 2811, 2932
BstX2I	RGATCY	4 cut(s)	212, 1186, 2077, 2855
BstXI	CCANNNNNNTGG	1 cut(s)	627
BstYI	RGATCY	4 cut(s)	212, 1186, 2077, 2855
BstZI	CGGCCG	1 cut(s)	359
Bsu36I	CCTNAGG	2 cut(s)	828, 885
BsuI	GTATCC	1 cut(s)	1938
BsuRI	GGCC	6 cut(s)	58, 228, 361, 845, 1421, 1505
BtgI	CCRYGG	3 cut(s)	39, 229, 356
BtgZI	GCGATG	1 cut(s)	3015
BtrI	CACGTC	2 cut(s)	1865, 2200
BtsCI	GGATG	6 cut(s)	22, 476, 591, 1604, 2014, 2061
BtsI	GCAGTG	1 cut(s)	2103
BtsIMutI	CAGTG	8 cut(s)	198, 543, 722, 1823, 2047, 2103, 2488, 2703
BveI	ACCTGC	1 cut(s)	2092
Cac8I	GCNNGC	5 cut(s)	462, 589, 1485, 1810, 2026
CciI	TCATGA	1 cut(s)	2971
Cfr13I	GGNCC	7 cut(s)	8, 218, 844, 1419, 1504, 2239, 2894
Csp6I	GTAC	5 cut(s)	302, 530, 1241, 1771, 2479
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviQI	GTAC	5 cut(s)	302, 530, 1241, 1771, 2479
DdeI	CTNAG	9 cut(s)	177, 267, 306, 828, 885, 966, 1206, 1591, 1840
DraI	TTTAAA	1 cut(s)	1369
DriI	GACNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	2 cut(s)	56, 359
EagI	CGGCCG	1 cut(s)	359
Eam1104I	CTCTTC	7 cut(s)	121, 1920, 1926, 2148, 2490, 2574, 2780
Eam1105I	GACNNNNNGTC	1 cut(s)	560
EarI	CTCTTC	7 cut(s)	121, 1920, 1926, 2148, 2490, 2574, 2780
EciI	GGCGGA	1 cut(s)	1552
Ecl136II	GAGCTC	1 cut(s)	2502
EclXI	CGGCCG	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	39, 229
Eco24I	GRGCYC	1 cut(s)	2504
Eco31I	GGTCTC	2 cut(s)	1671, 2853
Eco47I	GGWCC	4 cut(s)	8, 218, 2239, 2894
Eco52I	CGGCCG	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	2502
Eco57I	CTGAAG	5 cut(s)	555, 857, 1161, 1700, 2087
Eco72I	CACGTG	1 cut(s)	1559
Eco81I	CCTNAGG	2 cut(s)	828, 885
EcoICRI	GAGCTC	1 cut(s)	2502
EcoO109I	RGGNCCY	1 cut(s)	2239
EcoRII	CCWGG	3 cut(s)	223, 1896, 2234
EcoT14I	CCWWGG	2 cut(s)	39, 229
EcoT22I	ATGCAT	2 cut(s)	742, 1366
EcoT38I	GRGCYC	1 cut(s)	2504
ErhI	CCWWGG	2 cut(s)	39, 229
FaqI	GGGAC	2 cut(s)	498, 2252
FauNDI	CATATG	1 cut(s)	2089
FbaI	TGATCA	1 cut(s)	2968
FblI	GTMKAC	1 cut(s)	1385
FokI	GGATG	6 cut(s)	29, 463, 578, 1591, 2021, 2048
FriOI	GRGCYC	1 cut(s)	2504
FspBI	CTAG	6 cut(s)	1011, 1916, 2159, 2312, 2859, 2981
GsuI	CTGGAG	2 cut(s)	564, 746
HaeIII	GGCC	6 cut(s)	58, 228, 361, 845, 1421, 1505
HapII	CCGG	2 cut(s)	55, 847
HincII	GTYRAC	2 cut(s)	1159, 1599
HindII	GTYRAC	2 cut(s)	1159, 1599
HindIII	AAGCTT	1 cut(s)	1485
HinfI	GANTC	7 cut(s)	428, 616, 809, 1382, 1787, 2735, 2900
HpaI	GTTAAC	1 cut(s)	1599
HpaII	CCGG	2 cut(s)	55, 847
HphI	GGTGA	9 cut(s)	161, 556, 560, 1044, 2215, 2504, 2672, 2933, 2978
Hpy166II	GTNNAC	6 cut(s)	221, 551, 1159, 1386, 1599, 2375
Hpy8I	GTNNAC	6 cut(s)	221, 551, 1159, 1386, 1599, 2375
HpyCH4III	ACNGT	7 cut(s)	916, 1033, 1156, 1857, 1985, 2450, 2483
HpyCH4IV	ACGT	7 cut(s)	1558, 1651, 1750, 1864, 1975, 2199, 2377
HpyF3I	CTNAG	9 cut(s)	177, 267, 306, 828, 885, 966, 1206, 1591, 1840
HpySE526I	ACGT	7 cut(s)	1558, 1651, 1750, 1864, 1975, 2199, 2377
Ksp22I	TGATCA	1 cut(s)	2968
KspAI	GTTAAC	1 cut(s)	1599
LguI	GCTCTTC	2 cut(s)	1926, 2148
LmnI	GCTCC	6 cut(s)	25, 529, 583, 1761, 2323, 2977
Lsp1109I	GCAGC	9 cut(s)	208, 225, 401, 550, 1132, 1156, 1824, 2008, 2874
MaeI	CTAG	6 cut(s)	1011, 1916, 2159, 2312, 2859, 2981
MaeII	ACGT	7 cut(s)	1558, 1651, 1750, 1864, 1975, 2199, 2377
MaeIII	GTNAC	8 cut(s)	201, 562, 799, 1108, 1150, 1270, 1793, 2177
MbiI	CCGCTC	1 cut(s)	1477
MfeI	CAATTG	3 cut(s)	455, 1314, 2537
MflI	RGATCY	4 cut(s)	212, 1186, 2077, 2855
MhlI	GDGCHC	3 cut(s)	355, 1862, 2504
MluI	ACGCGT	1 cut(s)	2335
MlyI	GAGTC	2 cut(s)	422, 1391
MmeI	TCCRAC	3 cut(s)	103, 619, 1560
Mph1103I	ATGCAT	2 cut(s)	742, 1366
MslI	CAYNNNNRTG	4 cut(s)	95, 1427, 2796, 2946
MspCI	CTTAAG	1 cut(s)	346
MspI	CCGG	2 cut(s)	55, 847
MspR9I	CCNGG	4 cut(s)	225, 847, 1898, 2236
MunI	CAATTG	3 cut(s)	455, 1314, 2537
Mva1269I	GAATGC	1 cut(s)	1592
MvaI	CCWGG	3 cut(s)	225, 1898, 2236
MvnI	CGCG	2 cut(s)	1911, 2337
NciI	CCSGG	1 cut(s)	847
NcoI	CCATGG	2 cut(s)	39, 229
NdeI	CATATG	1 cut(s)	2089
NlaIV	GGNNCC	3 cut(s)	996, 1257, 2240
NmuCI	GTSAC	6 cut(s)	562, 799, 1150, 1270, 1793, 2177
NsiI	ATGCAT	2 cut(s)	742, 1366
NspI	RCATGY	2 cut(s)	122, 464
NspV	TTCGAA	1 cut(s)	2188
PaeI	GCATGC	1 cut(s)	464
PagI	TCATGA	1 cut(s)	2971
PciSI	GCTCTTC	2 cut(s)	1926, 2148
PcsI	WCGNNNNNNNCGW	2 cut(s)	1861, 1981
PctI	GAATGC	1 cut(s)	1592
PfeI	GAWTC	5 cut(s)	616, 809, 1787, 2735, 2900
PflMI	CCANNNNNTGG	4 cut(s)	215, 230, 1614, 1765
PfoI	TCCNGGA	1 cut(s)	1896
PleI	GAGTC	2 cut(s)	422, 1390
PmaCI	CACGTG	1 cut(s)	1559
PmlI	CACGTG	1 cut(s)	1559
PpsI	GAGTC	2 cut(s)	422, 1390
Ppu21I	YACGTR	1 cut(s)	1559
PpuMI	RGGWCCY	1 cut(s)	2239
PshBI	ATTAAT	2 cut(s)	1287, 1437
Psp124BI	GAGCTC	1 cut(s)	2504
Psp1406I	AACGTT	1 cut(s)	1651
Psp5II	RGGWCCY	1 cut(s)	2239
Psp6I	CCWGG	3 cut(s)	223, 1896, 2234
PspCI	CACGTG	1 cut(s)	1559
PspGI	CCWGG	3 cut(s)	223, 1896, 2234
PspN4I	GGNNCC	3 cut(s)	996, 1257, 2240
PspPI	GGNCC	7 cut(s)	8, 218, 844, 1419, 1504, 2239, 2894
PspPPI	RGGWCCY	1 cut(s)	2239
PstI	CTGCAG	2 cut(s)	1174, 2026
PsuI	RGATCY	4 cut(s)	212, 1186, 2077, 2855
RsaI	GTAC	5 cut(s)	303, 531, 1242, 1772, 2480
RsaNI	GTAC	5 cut(s)	302, 530, 1241, 1771, 2479
RseI	CAYNNNNRTG	4 cut(s)	95, 1427, 2796, 2946
SacI	GAGCTC	1 cut(s)	2504
SapI	GCTCTTC	2 cut(s)	1926, 2148
Sau96I	GGNCC	7 cut(s)	8, 218, 844, 1419, 1504, 2239, 2894
SchI	GAGTC	2 cut(s)	422, 1391
ScrFI	CCNGG	4 cut(s)	225, 847, 1898, 2236
SduI	GDGCHC	3 cut(s)	355, 1862, 2504
SfcI	CTRYAG	2 cut(s)	1170, 2022
SfuI	TTCGAA	1 cut(s)	2188
SinI	GGWCC	4 cut(s)	8, 218, 2239, 2894
SmiMI	CAYNNNNRTG	4 cut(s)	95, 1427, 2796, 2946
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SpeI	ACTAGT	1 cut(s)	1010
SphI	GCATGC	1 cut(s)	464
SsiI	CCGC	8 cut(s)	35, 185, 362, 1477, 1537, 1681, 1996, 2944
SspMI	CTAG	6 cut(s)	1011, 1916, 2159, 2312, 2859, 2981
SstI	GAGCTC	1 cut(s)	2504
StyD4I	CCNGG	4 cut(s)	223, 845, 1896, 2234
StyI	CCWWGG	2 cut(s)	39, 229
TaaI	ACNGT	7 cut(s)	916, 1033, 1156, 1857, 1985, 2450, 2483
TaiI	ACGT	7 cut(s)	1561, 1654, 1753, 1867, 1978, 2202, 2380
TaqI	TCGA	6 cut(s)	25, 431, 2188, 2267, 2520, 2630
TaqII	GACCGA	2 cut(s)	859, 2826
TatI	WGTACW	3 cut(s)	1240, 1770, 2478
TauI	GCSGC	2 cut(s)	37, 364
TfiI	GAWTC	5 cut(s)	616, 809, 1787, 2735, 2900
TscAI	CASTG	8 cut(s)	198, 550, 729, 1823, 2054, 2103, 2488, 2710
TseFI	GTSAC	6 cut(s)	562, 799, 1150, 1270, 1793, 2177
TseI	GCWGC	9 cut(s)	196, 238, 389, 538, 1145, 1169, 1812, 2021, 2862
Tsp45I	GTSAC	6 cut(s)	562, 799, 1150, 1270, 1793, 2177
TspGWI	ACGGA	1 cut(s)	2709
TspRI	CASTG	8 cut(s)	198, 550, 729, 1823, 2054, 2103, 2488, 2710
Van91I	CCANNNNNTGG	4 cut(s)	215, 230, 1614, 1765
Vha464I	CTTAAG	1 cut(s)	346
VpaK11BI	GGWCC	4 cut(s)	8, 218, 2239, 2894
VspI	ATTAAT	2 cut(s)	1287, 1437
XapI	RAATTY	8 cut(s)	109, 408, 758, 1195, 1211, 1890, 2184, 2993
XbaI	TCTAGA	1 cut(s)	1915
XceI	RCATGY	2 cut(s)	122, 464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2436, 2816
XmiI	GTMKAC	1 cut(s)	1385
XspI	CTAG	6 cut(s)	1011, 1916, 2159, 2312, 2859, 2981
Zsp2I	ATGCAT	2 cut(s)	742, 1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.