Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Reverse (-)

63702934 .. 63740566

Gene Structure 37633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3468 bp

ATGAGACCCCAGCTGAGCGCCAAGCCTGTGGCTTTCCATTTGAGGAAATACGATTTCAATCGATATAGACAAGGTTGTGAAGCACAATTGACATCCTCGAAACAAGAATTAAGGACAGATGGAAGAGCTTTTAGAGCAGCTTCAAGTCCCGGAGGAAGTCATAGTTGGCCTAAGATCAGAGTTGAGCAAGCACGAGGTGAGATGATCAAATTTCCAATGTATTCAAGAATCTCCATCGGCGAGCGTTCGAATCCCAGCTCCATCCCGTGGCCAGCAGATTTGAGGGACCCTTTGGGTTCGTGCGTCGCGGTGCGGTGGATTAGTCCGGCTTTGCCTCGGCTTTCGTTGCAATGTCGGTGCAGGTGTCCCGGCACCGGGATACCACCGCATGGGTGTAAGAGCATAGAACGCAAATATGTGAGTCCAAGATCACCCTTTTCGAAGCAAGCCTTTCTAGAGAAGTTGTTGTCAGAGGCTCGTGTCATTACTCAGATGGCCAATAATCCTCAATATTCAGGGTTGCAGCCTCTTCGGCCTCCTATGGTTGGTCCTGTGGATGCTCCTCGAAGTATGCCGCCCATGGGTTTTCAATTCCGGCCTGTAGTTCCAGCACCTCATTCGCAGGAGTTCATTCCTGTGGCTTCGCAAAATTTTCAGCATGTCGGAAGAGGTGTTCCACCAATGAATGTTAGACTGCCTCCTCCAATTCACCAACCTCAGTTTCCGCAACCAGTGCAGCAGTTACCTCCAAGATCTGGCCCACCAGGCCATGGTATGCTGCCACAGGCAATTCCCTTACCAGTTGCTCAGTCCATCAGGAACTTTGCACCTGAATTGCCTGTACCTCAGCCTAATGTGCTACCTCCAAATAATGTCATGTCTAACTTAAGTGCCCCACGGCCACCTCTTTCTTCATCATATACTTTTGCAGCTTCTTCTTATGGTCAAATTCCAAGAAGTTTTAATGACTCGAACCAGTATCAGTCTATATCTCAATTGCATGCACCAAATGTTTCATCCGAGGGACAAGTTAGGTTATCATCTGATAGCCAGTCTGCTGTTGCTTCTGTACCTTTGCAGTCTACTGGTGAACGACCTTCTGTCACCACTTCAGTTGCTCCAGAAGCCAGCATCCAACCTATCTCTCTTGGAGGAAATCCAGCAGAGTGGATTGACCATAAATCTGCTGATGGAAGAAGGTTTTATTACAACAGGAGGACACGATTATCCACTTGGGAGAAGCCTTTTGAATTGATGACACCACTGGAGAGGGCAGATGCATCAACTAACTGGAAGGAATTTACCAGTCCTGATGGAAAAAAGTATTTCCACAACAAGGTCACTAAAGAATCAAGATGGACTATACCTGAGGAACTGAAGTTGGCCCGGCAACAAGTGGAGAAGGCATCACTCAAGGACATTCCTCAGGAGATGCCTGTAAATCATCACGCCACAGTATCAGTTTCTCCCCCTGTAAGTGAAGCTCATACATCAACCACTACTGCTCAAGTAGCATCAAGCCCTGTTTCGGTGGCACCTGTTGTTGCCACTAGTGATGTTCAAACTTCCACAGTTTCAAGATCATCTGCCTCACCTGTTATGGCTTCTCCTGTAAAAGAAAATGCTGATGGAGTTCAGATACCTGTTGTTACACCATCTTCTGATGCTTTTGAAAATGCTGAAGCTGCTGTCACAGTCAACAATACTGCTGCAGAACTAATGGAAGATCCAAAGAATTTACCAACTCAGGAATTTGTTAATTCTTCCGAGGAAGTTCATGTACAGGAGAATAAGGAACCTACAAATGATGTGACAGGAGAGAAAATTAATGACATTGCATCAGAAGAAAAACCAATTGATCCAGAACCCATAAGTTATTCAAATAAGCTGGAAGCTAAAGATGCATTTAAAGCACTCTTGGAGTCTACCAACATTGGGTCTGATTGGACTTGGGATCGGGCCATGAGAGTGATAATTAATGACAAAAGATATGGTGCTTTGAAAACACTTGGAGAGCGGAAGCAAGCTTTTAATGAGTTTGTGGCCCAAAGGAAAAAACAGGAGGTTGAGGAGAGGCGGATCAAGCAGAAAAAAGCACGTGAAGATTTTACAAAGATGTTGGAAAGCATATTTGAAAATGATGAACGTTTCAAAGCAGTTGAAAGAGAGAGAGACCGCAGGGATTTGTTTGATAACTATTTGGAGGAACTTCAGAAGAAAGAAAGAGCAAAGGCACAGGAGGAACGTAAGCTCCATATAGTGGAGTACAGACAATTCTTGGAATCTTGTGACTTCATCAAGGCAAGCAGCCAGTGGCGAAAAGTTCAAGATCGCTTAGAGGCTGACGAACGGTGCTCACGTCTTGAAAAAATTGATCGTTTGGAGATTTTCCAGGAATATCTACGTGATCTAGAGAAGGAAGAGGAAGAGCAGAGGAGGATACAGAAGGAAGAATTGAGGAAGGCAGAACGTAAAAACCGTGATGAGTTCCGCAAATTGATGGATGAACATATTGCTGCAGGCACTCTTTCAGCTACAACTCACTGGCGAGATTACATCCTGAAGGTTAAAGATCTACCTGCATATGTAGCAGTGGTATCAAACACCTCTGGTTCAACTCCAAAAGATTTATTTGAAGATGTTATTGAAGAGCTAGAGAAGCAAATTGTGCTTTCATCAACCTGGGACCTTGAAGCCTTCAAAACTGCTATATCGAATGATATTGGCTCTTCACCCATATCAGATGCAAACTTAATGCTAGTATTTGAGGAGCTAATGGAACGCGTGAGGGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTAAACGTCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATGAAGGAGATAACTCCATCTTCTAAATGGGAGGACTGTAAATCACTTCTTGAAGTTAGTTCAGAGTACAGTGCTATTAGTGAAGAGAGCTCATGCAAGGAGATATTCGATAAACACATAATGCAATTGAAAGAACAAGCAAAGGAGAAAGAGAGAAAACGAAAGGAAGAGAAGGAGAGGAAGGAAAAGGACAGGGAAGAAAGAGAGAGGAGAAGGTCGAAGCAGAGAAGGGAAAGAGGGGTAGGATATGAAAGAGATAAAGAGGATCACCTTATGAAAGACGGAGAAGACACTGAAATTATTGACATAATGGAGGTTAATGATTCCAAAGAGAAAAGGAGATCAGGAAAAGACGATGATAAGAAACATAGGAAGAGGCATCAAAGTGATGAAGACCATCAAACAAATGGAAGTGAGAATGATCGGTCTAAAAGGTCTCATGGATCTAGCAGCGACCACAAGAGATCAAGACGGGCATCTGGTCCTGAATCAGATACCGAAAGCAGACATAGGAGACATAAGAGAGATCACCGCAATGGTTCTCGGAGAAGTGGTGATCATGAGGAGCTAGAAGATGGGGAATTTGGTGATGTTGGGGAAAGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

1155

Amino Acids

131.79

Weight (kDa)

7.89

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	387 - 415	2.1e-08	WW domain
WW	PF00397	430 - 456	6.6e-08	WW domain
FF	PF01846	631 - 680	2e-16	FF domain
FF	PF01846	825 - 880	5.5e-08	FF domain
FF_PRPF40A	PF25432	886 - 931	1.6e-12	PRPF40A-like, FF domain
FF	PF01846	945 - 992	1.2e-08	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	351
Acc36I	ACCTGC	2 cut(s)	351, 2587
AccB1I	GGYRCC	2 cut(s)	371, 1534
AccB7I	CCANNNNNTGG	5 cut(s)	267, 389, 755, 770, 2260
AccBSI	CCGCTC	1 cut(s)	2017
AccI	GTMKAC	2 cut(s)	1082, 1925
AccII	CGCG	2 cut(s)	308, 2784
AclI	AACGTT	1 cut(s)	2146
AclWI	GGATC	6 cut(s)	1721, 1853, 1962, 2087, 3132, 3310
AcoI	YGGCCR	3 cut(s)	269, 495, 899
AcsI	RAATTY	7 cut(s)	209, 649, 948, 1298, 1735, 1751, 3440
AcuI	CTGAAG	5 cut(s)	1095, 1397, 1701, 2195, 2582
AcvI	CACGTG	1 cut(s)	2099
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	5 cut(s)	843, 1071, 1782, 2267, 2927
AflII	CTTAAG	1 cut(s)	886
AflIII	ACRYGT	1 cut(s)	2782
AhdI	GACNNNNNGTC	1 cut(s)	1100
AhlI	ACTAGT	1 cut(s)	1550
AjiI	CACGTC	1 cut(s)	2360
AjnI	CCWGG	3 cut(s)	763, 2391, 2681
AjuI	GAANNNNNNNTTGG	4 cut(s)	148, 180, 705, 737
AloI	GAACNNNNNNTCC	4 cut(s)	657, 689, 2235, 2267
Alw21I	GWGCWC	2 cut(s)	2357, 2951
Alw26I	GTCTC	3 cut(s)	2166, 3300, 3367
AlwI	GGATC	6 cut(s)	1721, 1853, 1962, 2087, 3132, 3310
ApoI	RAATTY	7 cut(s)	209, 649, 948, 1298, 1735, 1751, 3440
AseI	ATTAAT	2 cut(s)	1827, 1977
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	8 cut(s)	286, 548, 758, 1384, 1959, 2044, 2686, 3341
AsuC2I	CCSGG	4 cut(s)	150, 369, 376, 1387
AsuII	TTCGAA	2 cut(s)	248, 440
AvaII	GGWCC	4 cut(s)	286, 548, 2686, 3341
AxyI	CCTNAGG	2 cut(s)	1368, 1425
BaeGI	GKGCMC	1 cut(s)	895
BalI	TGGCCA	2 cut(s)	271, 497
BanI	GGYRCC	2 cut(s)	371, 1534
BanII	GRGCYC	1 cut(s)	2951
BarI	GAAGNNNNNNTAC	2 cut(s)	1764, 1796
BauI	CACGAG	2 cut(s)	192, 477
BbrPI	CACGTG	1 cut(s)	2099
BbsI	GAAGAC	2 cut(s)	3153, 3258
Bbv12I	GWGCWC	2 cut(s)	2357, 2951
BbvCI	CCTCAGC	1 cut(s)	846
BceAI	ACGGC	1 cut(s)	914
BcgI	CGANNNNNNTGC	4 cut(s)	512, 546, 600, 634
BciT130I	CCWGG	3 cut(s)	765, 2393, 2683
BciVI	GTATCC	2 cut(s)	372, 2433
BclI	TGATCA	2 cut(s)	204, 3415
BcnI	CCSGG	4 cut(s)	150, 369, 376, 1387
BcoDI	GTCTC	3 cut(s)	2166, 3300, 3367
BcuI	ACTAGT	1 cut(s)	1550
BfaI	CTAG	7 cut(s)	455, 1551, 2411, 2654, 2759, 3306, 3428
BfmI	CTRYAG	3 cut(s)	600, 1710, 2517
BfoI	RGCGCY	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	886
BfuAI	ACCTGC	2 cut(s)	351, 2587
BfuI	GTATCC	2 cut(s)	372, 2433
BglI	GCCNNNNNGGC	2 cut(s)	532, 765
BglII	AGATCT	2 cut(s)	752, 2572
BlpI	GCTNAGC	1 cut(s)	14
Bme1390I	CCNGG	7 cut(s)	150, 369, 376, 765, 1387, 2393, 2683
Bme18I	GGWCC	4 cut(s)	286, 548, 2686, 3341
BmeRI	GACNNNNNGTC	1 cut(s)	1100
BmgBI	CACGTC	1 cut(s)	2360
BmgT120I	GGNCC	8 cut(s)	286, 548, 758, 1384, 1959, 2044, 2686, 3341
BmiI	GGNNCC	6 cut(s)	287, 288, 373, 1536, 1797, 2687
BmrFI	CCNGG	7 cut(s)	150, 369, 376, 765, 1387, 2393, 2683
BpiI	GAAGAC	2 cut(s)	3153, 3258
BpmI	CTGGAG	2 cut(s)	1104, 1286
Bpu10I	CCTNAGC	1 cut(s)	846
Bpu1102I	GCTNAGC	1 cut(s)	14
Bpu14I	TTCGAA	2 cut(s)	248, 440
BpuEI	CTTGAG	2 cut(s)	1397, 1491
BpuMI	CCSGG	4 cut(s)	150, 369, 376, 1387
Bsa29I	ATCGAT	1 cut(s)	61
BsaAI	YACGTR	2 cut(s)	2099, 2405
BsaBI	GATNNNNATC	1 cut(s)	57
BsaI	GGTCTC	2 cut(s)	2166, 3300
BsaJI	CCNNGG	8 cut(s)	266, 335, 579, 769, 896, 1020, 1767, 2682
BsaXI	ACNNNNNCTCC	4 cut(s)	2235, 2265, 3397, 3427
Bse21I	CCTNAGG	2 cut(s)	1368, 1425
Bse3DI	GCAATG	3 cut(s)	356, 1833, 3400
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	765, 2393, 2683
BseCI	ATCGAT	1 cut(s)	61
BseDI	CCNNGG	8 cut(s)	266, 335, 579, 769, 896, 1020, 1767, 2682
BseGI	GGATG	7 cut(s)	92, 261, 562, 1016, 1131, 2509, 2556
BseJI	GATNNNNATC	1 cut(s)	57
BseMI	GCAATG	3 cut(s)	356, 1833, 3400
BseMII	CTCAG	8 cut(s)	5, 503, 731, 821, 860, 1359, 1439, 1760
BseRI	GAGGAG	8 cut(s)	552, 690, 2084, 2449, 2783, 2813, 3082, 3437
BseSI	GKGCMC	1 cut(s)	895
BseYI	CCCAGC	2 cut(s)	9, 254
BsgI	GTGCAG	2 cut(s)	379, 755
Bsh1236I	CGCG	2 cut(s)	308, 2784
BshNI	GGYRCC	2 cut(s)	371, 1534
BshVI	ATCGAT	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	2357, 2951
BsiSI	CCGG	6 cut(s)	150, 326, 369, 375, 595, 1387
BslFI	GGGAC	5 cut(s)	132, 299, 351, 1038, 2699
BsmAI	GTCTC	3 cut(s)	2166, 3300, 3367
BsmFI	GGGAC	5 cut(s)	132, 299, 351, 1038, 2699
Bso31I	GGTCTC	2 cut(s)	2166, 3300
Bsp119I	TTCGAA	2 cut(s)	248, 440
Bsp1286I	GDGCHC	3 cut(s)	895, 2357, 2951
Bsp1407I	TGTACA	1 cut(s)	1780
Bsp1720I	GCTNAGC	1 cut(s)	14
Bsp19I	CCATGG	2 cut(s)	579, 769
BspCNI	CTCAG	8 cut(s)	6, 502, 730, 820, 859, 1360, 1438, 1759
BspDI	ATCGAT	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	308, 2784
BspHI	TCATGA	1 cut(s)	3418
BspLI	GGNNCC	6 cut(s)	287, 288, 373, 1536, 1797, 2687
BspMAI	CTGCAG	2 cut(s)	1714, 2521
BspMI	ACCTGC	2 cut(s)	351, 2587
BspPI	GGATC	6 cut(s)	1721, 1853, 1962, 2087, 3132, 3310
BspQI	GCTCTTC	4 cut(s)	118, 2421, 2643, 2734
BspT104I	TTCGAA	2 cut(s)	248, 440
BspT107I	GGYRCC	2 cut(s)	371, 1534
BspTI	CTTAAG	1 cut(s)	886
BspTNI	GGTCTC	2 cut(s)	2166, 3300
BsrBI	CCGCTC	1 cut(s)	2017
BsrDI	GCAATG	3 cut(s)	356, 1833, 3400
BsrGI	TGTACA	1 cut(s)	1780
BssECI	CCNNGG	8 cut(s)	266, 335, 579, 769, 896, 1020, 1767, 2682
BssSI	CACGAG	2 cut(s)	192, 477
BssT1I	CCWWGG	2 cut(s)	579, 769
Bst2BI	CACGAG	2 cut(s)	192, 477
Bst2UI	CCWGG	3 cut(s)	765, 2393, 2683
Bst4CI	ACNGT	7 cut(s)	1456, 1573, 1696, 2352, 2480, 2897, 2930
BstAFI	CTTAAG	1 cut(s)	886
BstAPI	GCANNNNNTGC	2 cut(s)	733, 2668
BstAUI	TGTACA	1 cut(s)	1780
BstBAI	YACGTR	2 cut(s)	2099, 2405
BstBI	TTCGAA	2 cut(s)	248, 440
BstC8I	GCNNGC	9 cut(s)	189, 242, 273, 447, 1002, 1129, 2025, 2305, 2521
BstDSI	CCRYGG	4 cut(s)	266, 579, 769, 896
BstF5I	GGATG	7 cut(s)	92, 261, 562, 1016, 1131, 2509, 2556
BstFNI	CGCG	2 cut(s)	308, 2784
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstMAI	GTCTC	3 cut(s)	2166, 3300, 3367
BstNI	CCWGG	3 cut(s)	765, 2393, 2683
BstNSI	RCATGY	2 cut(s)	662, 1004
BstSCI	CCNGG	7 cut(s)	148, 367, 374, 763, 1385, 2391, 2681
BstSFI	CTRYAG	3 cut(s)	600, 1710, 2517
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	2 cut(s)	308, 2784
BstV2I	GAAGAC	2 cut(s)	3153, 3258
BstX2I	RGATCY	4 cut(s)	752, 1726, 2572, 3302
BstXI	CCANNNNNNTGG	2 cut(s)	28, 1167
BstYI	RGATCY	4 cut(s)	752, 1726, 2572, 3302
Bsu15I	ATCGAT	1 cut(s)	61
Bsu36I	CCTNAGG	2 cut(s)	1368, 1425
BsuI	GTATCC	2 cut(s)	372, 2433
BsuTUI	ATCGAT	1 cut(s)	61
BtgI	CCRYGG	4 cut(s)	266, 579, 769, 896
BtrI	CACGTC	1 cut(s)	2360
BtsCI	GGATG	7 cut(s)	92, 261, 562, 1016, 1131, 2509, 2556
BtsI	GCAGTG	1 cut(s)	2598
BtsIMutI	CAGTG	7 cut(s)	738, 1262, 2318, 2542, 2598, 2935, 3150
BveI	ACCTGC	2 cut(s)	351, 2587
Cac8I	GCNNGC	9 cut(s)	189, 242, 273, 447, 1002, 1129, 2025, 2305, 2521
CciI	TCATGA	1 cut(s)	3418
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	8 cut(s)	286, 548, 758, 1384, 1959, 2044, 2686, 3341
ClaI	ATCGAT	1 cut(s)	61
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	5 cut(s)	842, 1070, 1781, 2266, 2926
CspCI	CAANNNNNGTGG	2 cut(s)	1096, 1131
CviQI	GTAC	5 cut(s)	842, 1070, 1781, 2266, 2926
DraI	TTTAAA	1 cut(s)	1909
DraIII	CACNNNGTG	1 cut(s)	197
DriI	GACNNNNNGTC	1 cut(s)	1100
EaeI	YGGCCR	3 cut(s)	269, 495, 899
Eam1105I	GACNNNNNGTC	1 cut(s)	1100
EciI	GGCGGA	1 cut(s)	2092
Ecl136II	GAGCTC	1 cut(s)	2949
Eco130I	CCWWGG	2 cut(s)	579, 769
Eco24I	GRGCYC	1 cut(s)	2951
Eco31I	GGTCTC	2 cut(s)	2166, 3300
Eco47I	GGWCC	4 cut(s)	286, 548, 2686, 3341
Eco53kI	GAGCTC	1 cut(s)	2949
Eco57I	CTGAAG	5 cut(s)	1095, 1397, 1701, 2195, 2582
Eco72I	CACGTG	1 cut(s)	2099
Eco81I	CCTNAGG	2 cut(s)	1368, 1425
EcoICRI	GAGCTC	1 cut(s)	2949
EcoO109I	RGGNCCY	2 cut(s)	286, 2686
EcoRII	CCWGG	3 cut(s)	763, 2391, 2681
EcoT14I	CCWWGG	2 cut(s)	579, 769
EcoT22I	ATGCAT	2 cut(s)	1282, 1906
EcoT38I	GRGCYC	1 cut(s)	2951
ErhI	CCWWGG	2 cut(s)	579, 769
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	5 cut(s)	132, 299, 351, 1038, 2699
FauNDI	CATATG	1 cut(s)	2584
FbaI	TGATCA	2 cut(s)	204, 3415
FblI	GTMKAC	2 cut(s)	1082, 1925
FokI	GGATG	7 cut(s)	79, 248, 569, 1003, 1118, 2516, 2543
FriOI	GRGCYC	1 cut(s)	2951
FspBI	CTAG	7 cut(s)	455, 1551, 2411, 2654, 2759, 3306, 3428
GlaI	GCGC	1 cut(s)	19
GsaI	CCCAGC	2 cut(s)	13, 258
GsuI	CTGGAG	2 cut(s)	1104, 1286
HaeII	RGCGCY	1 cut(s)	21
HapII	CCGG	6 cut(s)	150, 326, 369, 375, 595, 1387
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	1699
HindII	GTYRAC	1 cut(s)	1699
HindIII	AAGCTT	1 cut(s)	2025
HinfI	GANTC	9 cut(s)	228, 250, 421, 968, 1349, 1922, 2282, 3182, 3347
HpaII	CCGG	6 cut(s)	150, 326, 369, 375, 595, 1387
Hpy166II	GTNNAC	5 cut(s)	1083, 1091, 1699, 1926, 2822
Hpy8I	GTNNAC	5 cut(s)	1083, 1091, 1699, 1926, 2822
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4III	ACNGT	7 cut(s)	1456, 1573, 1696, 2352, 2480, 2897, 2930
HpyCH4IV	ACGT	7 cut(s)	2098, 2146, 2245, 2359, 2404, 2470, 2824
HpySE526I	ACGT	7 cut(s)	2098, 2146, 2245, 2359, 2404, 2470, 2824
HspAI	GCGC	1 cut(s)	18
KflI	GGGWCCC	1 cut(s)	286
Ksp22I	TGATCA	2 cut(s)	204, 3415
LguI	GCTCTTC	4 cut(s)	118, 2421, 2643, 2734
LmnI	GCTCC	6 cut(s)	263, 565, 1123, 2256, 2770, 3424
MaeI	CTAG	7 cut(s)	455, 1551, 2411, 2654, 2759, 3306, 3428
MaeII	ACGT	7 cut(s)	2098, 2146, 2245, 2359, 2404, 2470, 2824
MaeIII	GTNAC	7 cut(s)	741, 1102, 1339, 1648, 1690, 1810, 2288
MbiI	CCGCTC	1 cut(s)	2017
MfeI	CAATTG	4 cut(s)	86, 995, 1854, 2984
MflI	RGATCY	4 cut(s)	752, 1726, 2572, 3302
MhlI	GDGCHC	3 cut(s)	895, 2357, 2951
MlsI	TGGCCA	2 cut(s)	271, 497
MluI	ACGCGT	1 cut(s)	2782
MluNI	TGGCCA	2 cut(s)	271, 497
MlyI	GAGTC	3 cut(s)	430, 962, 1931
MmeI	TCCRAC	3 cut(s)	643, 1159, 2100
Mox20I	TGGCCA	2 cut(s)	271, 497
Mph1103I	ATGCAT	2 cut(s)	1282, 1906
MscI	TGGCCA	2 cut(s)	271, 497
MslI	CAYNNNNRTG	4 cut(s)	635, 1967, 3243, 3393
Msp20I	TGGCCA	2 cut(s)	271, 497
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	6 cut(s)	150, 326, 369, 375, 595, 1387
MspR9I	CCNGG	7 cut(s)	150, 369, 376, 765, 1387, 2393, 2683
MunI	CAATTG	4 cut(s)	86, 995, 1854, 2984
MvaI	CCWGG	3 cut(s)	765, 2393, 2683
MvnI	CGCG	2 cut(s)	308, 2784
NciI	CCSGG	4 cut(s)	150, 369, 376, 1387
NcoI	CCATGG	2 cut(s)	579, 769
NdeI	CATATG	1 cut(s)	2584
NlaIV	GGNNCC	6 cut(s)	287, 288, 373, 1536, 1797, 2687
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	5 cut(s)	1102, 1339, 1690, 1810, 2288
NsiI	ATGCAT	2 cut(s)	1282, 1906
NspI	RCATGY	2 cut(s)	662, 1004
NspV	TTCGAA	2 cut(s)	248, 440
PaeI	GCATGC	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	3418
PaqCI	CACCTGC	1 cut(s)	351
PciSI	GCTCTTC	4 cut(s)	118, 2421, 2643, 2734
PcsI	WCGNNNNNNNCGW	2 cut(s)	2356, 2476
PfeI	GAWTC	6 cut(s)	228, 250, 1349, 2282, 3182, 3347
PflMI	CCANNNNNTGG	5 cut(s)	267, 389, 755, 770, 2260
PfoI	TCCNGGA	2 cut(s)	148, 2391
PleI	GAGTC	3 cut(s)	429, 962, 1930
PmaCI	CACGTG	1 cut(s)	2099
PmlI	CACGTG	1 cut(s)	2099
PpsI	GAGTC	3 cut(s)	429, 962, 1930
Ppu21I	YACGTR	2 cut(s)	2099, 2405
PpuMI	RGGWCCY	2 cut(s)	286, 2686
PshBI	ATTAAT	2 cut(s)	1827, 1977
Psp124BI	GAGCTC	1 cut(s)	2951
Psp1406I	AACGTT	1 cut(s)	2146
Psp5II	RGGWCCY	2 cut(s)	286, 2686
Psp6I	CCWGG	3 cut(s)	763, 2391, 2681
PspCI	CACGTG	1 cut(s)	2099
PspFI	CCCAGC	2 cut(s)	9, 254
PspGI	CCWGG	3 cut(s)	763, 2391, 2681
PspN4I	GGNNCC	6 cut(s)	287, 288, 373, 1536, 1797, 2687
PspPI	GGNCC	8 cut(s)	286, 548, 758, 1384, 1959, 2044, 2686, 3341
PspPPI	RGGWCCY	2 cut(s)	286, 2686
PstI	CTGCAG	2 cut(s)	1714, 2521
PsuI	RGATCY	4 cut(s)	752, 1726, 2572, 3302
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	5 cut(s)	843, 1071, 1782, 2267, 2927
RsaNI	GTAC	5 cut(s)	842, 1070, 1781, 2266, 2926
RseI	CAYNNNNRTG	4 cut(s)	635, 1967, 3243, 3393
SacI	GAGCTC	1 cut(s)	2951
SapI	GCTCTTC	4 cut(s)	118, 2421, 2643, 2734
Sau96I	GGNCC	8 cut(s)	286, 548, 758, 1384, 1959, 2044, 2686, 3341
SchI	GAGTC	3 cut(s)	430, 962, 1931
ScrFI	CCNGG	7 cut(s)	150, 369, 376, 765, 1387, 2393, 2683
SduI	GDGCHC	3 cut(s)	895, 2357, 2951
SfcI	CTRYAG	3 cut(s)	600, 1710, 2517
SfiI	GGCCNNNNNGGCC	1 cut(s)	765
SfuI	TTCGAA	2 cut(s)	248, 440
SinI	GGWCC	4 cut(s)	286, 548, 2686, 3341
SmiMI	CAYNNNNRTG	4 cut(s)	635, 1967, 3243, 3393
SmlI	CTYRAG	3 cut(s)	886, 1412, 1506
SmoI	CTYRAG	3 cut(s)	886, 1412, 1506
SpeI	ACTAGT	1 cut(s)	1550
SphI	GCATGC	1 cut(s)	1004
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	7 cut(s)	455, 1551, 2411, 2654, 2759, 3306, 3428
SstI	GAGCTC	1 cut(s)	2951
StyD4I	CCNGG	7 cut(s)	148, 367, 374, 763, 1385, 2391, 2681
StyI	CCWWGG	2 cut(s)	579, 769
TaaI	ACNGT	7 cut(s)	1456, 1573, 1696, 2352, 2480, 2897, 2930
TaiI	ACGT	7 cut(s)	2101, 2149, 2248, 2362, 2407, 2473, 2827
TaqI	TCGA	9 cut(s)	61, 98, 248, 440, 565, 971, 2714, 2967, 3077
TaqII	GACCGA	1 cut(s)	3273
TatI	WGTACW	3 cut(s)	1780, 2265, 2925
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	6 cut(s)	228, 250, 1349, 2282, 3182, 3347
TscAI	CASTG	7 cut(s)	738, 1269, 2318, 2549, 2598, 2935, 3157
TseFI	GTSAC	5 cut(s)	1102, 1339, 1690, 1810, 2288
Tsp45I	GTSAC	5 cut(s)	1102, 1339, 1690, 1810, 2288
TspGWI	ACGGA	1 cut(s)	3156
TspRI	CASTG	7 cut(s)	738, 1269, 2318, 2549, 2598, 2935, 3157
Van91I	CCANNNNNTGG	5 cut(s)	267, 389, 755, 770, 2260
Vha464I	CTTAAG	1 cut(s)	886
VpaK11BI	GGWCC	4 cut(s)	286, 548, 2686, 3341
VspI	ATTAAT	2 cut(s)	1827, 1977
XapI	RAATTY	7 cut(s)	209, 649, 948, 1298, 1735, 1751, 3440
XbaI	TCTAGA	2 cut(s)	454, 2410
XceI	RCATGY	2 cut(s)	662, 1004
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2883, 3263
XmiI	GTMKAC	2 cut(s)	1082, 1925
XspI	CTAG	7 cut(s)	455, 1551, 2411, 2654, 2759, 3306, 3428
Zsp2I	ATGCAT	2 cut(s)	1282, 1906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.