Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Reverse (-)

71990606 .. 71990958

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0531500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATCGGAGAGCACGACGTTGAAATAGAACCCCTCGTTGCGCTCGAAAAATCTGAGGCCGATGAAGGCGTGCTTGTCGGTGCCGTCCTCGATCTTAAGGACGAAGTAGCTCGACGAGTCGAGCACGGTCTCGATGGAGGTCGCTGGAGTTCGGATCCTCAAGTCGGATCTCGCACTGGTCGATTGATTTGTGTGATCGCGGTGGTGAAGATGTTGACAAAGTTTGAGACGAAGAGTAATAAGAGTGAAGGGAGTACTGCGCTTCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

90

Amino Acids

9.73

Weight (kDa)

4.94

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	3 cut(s)	149, 162, 175
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	2 cut(s)	15, 126
Alw26I	GTCTC	2 cut(s)	134, 221
AlwI	GGATC	3 cut(s)	149, 162, 175
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	43, 262
AsuHPI	GGTGA	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	15, 126
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	134, 221
BfrI	CTTAAG	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	82, 156
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	15, 126
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	134, 221
BsmBI	CGTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	15, 126
Bsp143I	GATC	5 cut(s)	3, 91, 154, 167, 195
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	82, 156
BspPI	GGATC	3 cut(s)	149, 162, 175
BspT107I	GGYRCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	5 cut(s)	3, 91, 154, 167, 195
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	227
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	43, 262
BstKTI	GATC	5 cut(s)	6, 94, 157, 170, 198
BstMAI	GTCTC	2 cut(s)	134, 221
BstMBI	GATC	5 cut(s)	3, 91, 154, 167, 195
BstUI	CGCG	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	154, 167
BstYI	RGATCY	2 cut(s)	154, 167
BsuRI	GGCC	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	2 cut(s)	43, 262
Csp6I	GTAC	1 cut(s)	255
CviJI	RGCY	2 cut(s)	59, 110
CviKI_1	RGCY	2 cut(s)	59, 110
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	5 cut(s)	5, 93, 156, 169, 197
DpnII	GATC	5 cut(s)	3, 91, 154, 167, 195
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	221
FaiI	YATR	1 cut(s)	268
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
GlaI	GCGC	2 cut(s)	42, 261
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	43, 262
Hin6I	GCGC	2 cut(s)	41, 260
HinP1I	GCGC	2 cut(s)	41, 260
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	4 cut(s)	8, 55, 154, 167
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	20, 117
HpyAV	CCTTC	2 cut(s)	59, 242
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	18
HspAI	GCGC	2 cut(s)	41, 260
Kzo9I	GATC	5 cut(s)	3, 91, 154, 167, 195
LpnPI	CCDG	2 cut(s)	130, 162
MaeII	ACGT	1 cut(s)	18
MalI	GATC	5 cut(s)	5, 93, 156, 169, 197
MboI	GATC	5 cut(s)	3, 91, 154, 167, 195
MboII	GAAGA	2 cut(s)	220, 244
MflI	RGATCY	2 cut(s)	154, 167
MhlI	GDGCHC	2 cut(s)	15, 126
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	44, 49, 98, 131, 168
MseI	TTAA	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	200
NdeII	GATC	5 cut(s)	3, 91, 154, 167, 195
NlaIV	GGNNCC	2 cut(s)	82, 156
PcsI	WCGNNNNNNNCGW	3 cut(s)	12, 42, 178
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	82, 156
PsuI	RGATCY	2 cut(s)	154, 167
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	5 cut(s)	3, 91, 154, 167, 195
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	15, 126
SetI	ASST	3 cut(s)	21, 112, 142
SmlI	CTYRAG	2 cut(s)	95, 159
SmoI	CTYRAG	2 cut(s)	95, 159
SsiI	CCGC	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	6 cut(s)	45, 90, 112, 120, 132, 181
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	181
Vha464I	CTTAAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.