Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Reverse (-)

62292491 .. 62306688

Gene Structure 14198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3126 bp

ATGATCCTCCTCCCTCACTCAGCTCCGTTGTTGTCAGAGGCTCGTGTCATTACTCAGATGGCCAATAATCCTCAATATTCAGGGTTGCAGCCTCTTCGGCCTCCTATGGTTGGTCCTGTGGATGCTCCTCGAAGTATGCCACCCATGGGTTTTCAATTCCGGCCTGTAGTTCCAGCACCTCATTCGCAGGAGTTCATTCCTGTGGCTTCTCAAAATTTTCAGCATGTCGGAAGAGGTGTTCCACCAATGAATGTTAGACTGCCTCCTCCAATTCACCAACCTCAGTTTCCGCAACCAGTGCAGCAGTTACCTCCAAGATCTGGCCCACCAGGCCATGGTATGCTGCCACAGGCAATTCCCTTACCAGTTGCTCAGCCCATCAGGAACTTTGCACCGGAATTGCCTGTACCTCAGCCTAATGTGCTACCTCCAAATAATGTCATGTCTAACTTAAGTGCCCCACGGCCACCTCTTTCTTCATCATATACTTTTGCAGCTTCTTCTTATGGTCAAATTCCAAGAAGTTTTAACGACTCAAACCAGTATCAGTCTATATCTCAATTGCATGCACCAAATGTTTCATCCGATGGACAAGTTAGGTTATCATCTGATAGCCAGTCTGCTGTTGCTCCTGTACCTTTGCAGCCCACTGGTGAACGACCTTCTGTCACCACTTCAGTTGCTCCAGAAGCCAGCATCCAACCCATCTCTCTTGGAGGGAATCCAGCAGAGTGGATTGACCATAAATCTGCTGATGGAAGAAGGTTTTATTACAACAGGAGGACACGATTATCTACTTGGGAGAAGCCTTTTGAATTGATGACACCACTGGAGAGGGCAGATGCATCAACTAACTGGAAGGAATTTACCAGTCCTGATGGAAAAAAGTATTTCCACAACAAGGTCACTAAAGAATCAAGATGGACTATACCTGAGGAACTGAAGTTGGCCCGGCAACAAGTGGAGAAGGCATCGGTCAAGGACATTCCTCAGGAGATGCCTGTAAATCATCACGCCACAGTATCAGTTTCTCCCCCTGTAAGTGAAGCTCATACATCAACCACTAGTGCTCAAGTAGCATCAAGCCCTGTTTCGGTGGCACCTGTTGTTGCCACTAGTGATGTTCAAACTTCCACAGTTTCAAGATCATCTGCCTCACCTGTTATGGCTTCTCCTGTAAAAGAAAATGCTGATGGAGTTCAGATACCTGTTGTTACACCATCTTCTGATGCTTTTGAAAATGCTGAAGCTGCTGTCACAGTCAACAATACTGCTGCAGAACTAATGGAAGATCCAAAGAATTTACCAACTCTGGAATTTGTTAATTCTTCCGAGGAAGTTCATGTACAGGAGAATAAGGAACCTACAAATGATGTGACAGGAGAGAAAATTAATGACATTGCATCAGAAGAAAAACCAATTGATCCAGAACCCATAAGTTATTCAAATAAGCTGGAAGCTAAAGATGCATTTAAAGCACTCTTGGAGTCTACCAACATTGGGTCTGATTGGACTTGGGATCGGGCCATGAGAGTGATAATTAATGACAAAAGATATGGTGCTTTGAAAACACTTGGAGAGCGGAAGCAAGCTTTTAATGAGTTTGTGGCGCAAAGGAAAAAACAGGAGGTTGAGGAGAGGCGGATCAAGCAGAAAAAAGCACGTGAAGATTTTACAAAGATGTTGGAAGAATGCTCAGAGTTAACATCATCCACAAGATGGGGCAAATTAGAGAGCATATTTGAAAATGATGAACGTTTCAAAGCAGTTGAAAGAGAGAGAGACCGCAGGGATTTGTTTGATAGCTATTTGGAGGAACTTCAGAAGAAAGAAAGAGCAAAGGCACAGGAGGAACGTAAGCTCCATATAGTGGAGTACAGACAATTCTTGGAATCTTGTGACTTCATCAAGGCAAGCAGCCAGTGGCGAAAAGTTCAAGATCGCTTAGAGGCTGACGAACGGTGCTCACGTCTTGAAAAAATTGATCGTTTGGAGATTTTCCAGGAATATCTACGCGATCTAGAGAAGGAAGAGGAAGAGCAGAGGAGGATACAGAAGGAAGAATTGAGGAAGGCAGAACGTAAAAACCGTGATGAGTTCCGCAAATTGATGGATGAACATATTGCTGCAGGCACTCTTTCAGCTACAACTCACTGGCGAGATTACATCCTGAAGGTTAAAGATCTACCTGCATATGTAGCAGTGGTATCAAACACCTCTGGTTCAACTCCAAAAGATTTATTTGAAGATGTTATTGAAGAGCTAGAGAAGCAATATCAAAGTGACAAAATTCGAATAAAAGACGTGGTGAAGTCGGGAAAGATTGTGCTTTCATCAACCTGGGACCTTGAAGCCTTCAAAACTGCTATATCGAATGATATTGGCTCTCCACCCATATCAGATGCAAACTTAATGCTAGTATTTGAGGAGCTAATGGAACGCGTGAGGGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTAAACGTCTTGCAGATGATTTCTTTCATCTCTTATCTTCTATGAAGGAGATAACTCCATCTTCTAAATGGGAGGACTGTAAATCACTTCTTGAAGTTAGTTCAGAGTACAGTGCTATTGGTGAAGAGAGCTCATGCAAGGAGATATTCGATAAACACATAATGCAATTGAAAGAACAAGCAAAGGAGAAAGAGAGAAAACGGAAGGAAGAGAAGGAGAGGAAGGAAAAGGACAGGGAAGAAAGAGAGAGGAGAAGGTCGAAGCAGAGAAGGGAAAGAGGGGTAGGATATGAAAGAGATAAAGAGGATCACCTTATGAAAGACGGAGAAGACACTGAAATTATTGACATAATGGAGGTTAATGATTCCAAAGAGAAAAGGAGATCAGGAAAAGACGATGATAAGAAACATAGGAAGAGGCATCAAAGTGATGAAGACCATCAAACAAATGGAAGTGAGAATGATCGGTCTAAAAGGTCTCATGGATCTAGCAGCGACCACAAGAGATCAAGACGGGCATCTGGTCCTGAGTCAGATACCGAAAGCAGACATAGGAGACATAAGAGAGATCACCGCAATGGTTCTCGGAGAAGTGGTGATCATGAGGAGCTAGAAGATGGGGAATTTGGCGACGTTGGGGAAAGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

1042

Amino Acids

118.86

Weight (kDa)

6.22

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	242 - 270	1.9e-08	WW domain
WW	PF00397	285 - 311	5.8e-08	WW domain
FF	PF01846	486 - 535	1.8e-16	FF domain
FF	PF01846	553 - 603	5.9e-14	FF domain
FF	PF01846	695 - 750	4.8e-08	FF domain
FF_PRPF40A	PF25432	758 - 817	7.6e-20	PRPF40A-like, FF domain
FF	PF01846	831 - 878	1.5e-08	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2197
AccB1I	GGYRCC	1 cut(s)	1099
AccB7I	CCANNNNNTGG	4 cut(s)	320, 335, 1719, 1870
AccBSI	CCGCTC	1 cut(s)	1582
AccI	GTMKAC	1 cut(s)	1490
AccII	CGCG	2 cut(s)	2016, 2442
AciI	CCGC	6 cut(s)	290, 1582, 1642, 1786, 2101, 3049
AclI	AACGTT	1 cut(s)	1756
AclWI	GGATC	6 cut(s)	1286, 1418, 1527, 1652, 2790, 2968
AcoI	YGGCCR	2 cut(s)	60, 464
AcsI	RAATTY	7 cut(s)	214, 513, 863, 1300, 1316, 2289, 3098
AcuI	CTGAAG	5 cut(s)	660, 962, 1266, 1805, 2192
AcvI	CACGTG	1 cut(s)	1664
AfaI	GTAC	5 cut(s)	408, 636, 1347, 1877, 2585
AfiI	CCNNNNNNNGG	9 cut(s)	110, 146, 320, 335, 901, 1093, 1500, 1719, 1870
AflII	CTTAAG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	2440
AhdI	GACNNNNNGTC	1 cut(s)	665
AhlI	ACTAGT	2 cut(s)	1064, 1115
AjiI	CACGTC	2 cut(s)	1970, 2305
AjnI	CCWGG	3 cut(s)	328, 2001, 2339
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AloI	GAACNNNNNNTCC	4 cut(s)	222, 254, 1845, 1877
Alw21I	GWGCWC	3 cut(s)	1072, 1967, 2609
Alw26I	GTCTC	3 cut(s)	1776, 2958, 3025
AlwI	GGATC	6 cut(s)	1286, 1418, 1527, 1652, 2790, 2968
AoxI	GGCC	8 cut(s)	60, 98, 161, 322, 331, 464, 948, 1524
ApoI	RAATTY	7 cut(s)	214, 513, 863, 1300, 1316, 2289, 3098
AseI	ATTAAT	2 cut(s)	1392, 1542
AspLEI	GCGC	1 cut(s)	1612
AspS9I	GGNCC	6 cut(s)	113, 323, 949, 1524, 2344, 2999
AsuC2I	CCSGG	1 cut(s)	952
AsuHPI	GGTGA	9 cut(s)	266, 661, 665, 1149, 2320, 2609, 2777, 3038, 3083
AsuII	TTCGAA	1 cut(s)	2293
AvaII	GGWCC	3 cut(s)	113, 2344, 2999
AxyI	CCTNAGG	2 cut(s)	933, 990
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	1099
BanII	GRGCYC	1 cut(s)	2609
BarI	GAAGNNNNNNTAC	2 cut(s)	1329, 1361
BauI	CACGAG	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	1664
BbsI	GAAGAC	2 cut(s)	2811, 2916
Bbv12I	GWGCWC	3 cut(s)	1072, 1967, 2609
BbvCI	CCTCAGC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	479
BcgI	CGANNNNNNTGC	4 cut(s)	77, 111, 165, 199
BciT130I	CCWGG	3 cut(s)	330, 2003, 2341
BciVI	GTATCC	1 cut(s)	2043
BclI	TGATCA	1 cut(s)	3073
BcnI	CCSGG	1 cut(s)	952
BcoDI	GTCTC	3 cut(s)	1776, 2958, 3025
BcuI	ACTAGT	2 cut(s)	1064, 1115
BfaI	CTAG	7 cut(s)	1065, 1116, 2021, 2264, 2417, 2964, 3086
BfmI	CTRYAG	3 cut(s)	165, 1275, 2127
BfrI	CTTAAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	2197
BfuI	GTATCC	1 cut(s)	2043
BglI	GCCNNNNNGGC	2 cut(s)	97, 330
BglII	AGATCT	2 cut(s)	317, 2182
BlpI	GCTNAGC	1 cut(s)	372
Bme1390I	CCNGG	4 cut(s)	330, 952, 2003, 2341
Bme18I	GGWCC	3 cut(s)	113, 2344, 2999
BmeRI	GACNNNNNGTC	1 cut(s)	665
BmgBI	CACGTC	2 cut(s)	1970, 2305
BmgT120I	GGNCC	6 cut(s)	113, 323, 949, 1524, 2344, 2999
BmiI	GGNNCC	3 cut(s)	1101, 1362, 2345
BmrFI	CCNGG	4 cut(s)	330, 952, 2003, 2341
BpiI	GAAGAC	2 cut(s)	2811, 2916
BpmI	CTGGAG	2 cut(s)	669, 851
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	2293
BpuEI	CTTGAG	1 cut(s)	1056
BpuMI	CCSGG	1 cut(s)	952
BsaAI	YACGTR	1 cut(s)	1664
BsaI	GGTCTC	2 cut(s)	1776, 2958
BsaJI	CCNNGG	5 cut(s)	144, 334, 461, 1332, 2340
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	1845, 1875, 3055, 3085
Bsc4I	CCNNNNNNNGG	9 cut(s)	110, 146, 320, 335, 901, 1093, 1500, 1719, 1870
Bse21I	CCTNAGG	2 cut(s)	933, 990
Bse3DI	GCAATG	2 cut(s)	1398, 3058
BseBI	CCWGG	3 cut(s)	330, 2003, 2341
BseDI	CCNNGG	5 cut(s)	144, 334, 461, 1332, 2340
BseGI	GGATG	6 cut(s)	127, 581, 696, 1709, 2119, 2166
BseLI	CCNNNNNNNGG	9 cut(s)	110, 146, 320, 335, 901, 1093, 1500, 1719, 1870
BseMI	GCAATG	2 cut(s)	1398, 3058
BseMII	CTCAG	9 cut(s)	33, 68, 296, 386, 425, 924, 1004, 1710, 2994
BseRI	GAGGAG	8 cut(s)	117, 255, 1649, 2059, 2441, 2471, 2740, 3095
BseSI	GKGCMC	1 cut(s)	460
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	2016, 2442
BshFI	GGCC	8 cut(s)	62, 100, 163, 324, 333, 466, 950, 1526
BshNI	GGYRCC	1 cut(s)	1099
BsiHKAI	GWGCWC	3 cut(s)	1072, 1967, 2609
BsiSI	CCGG	3 cut(s)	160, 395, 952
BslFI	GGGAC	1 cut(s)	2357
BslI	CCNNNNNNNGG	9 cut(s)	110, 146, 320, 335, 901, 1093, 1500, 1719, 1870
BsmAI	GTCTC	3 cut(s)	1776, 2958, 3025
BsmFI	GGGAC	1 cut(s)	2357
BsmI	GAATGC	1 cut(s)	1697
BsnI	GGCC	8 cut(s)	62, 100, 163, 324, 333, 466, 950, 1526
Bso31I	GGTCTC	2 cut(s)	1776, 2958
Bsp119I	TTCGAA	1 cut(s)	2293
Bsp1286I	GDGCHC	4 cut(s)	460, 1072, 1967, 2609
Bsp1407I	TGTACA	1 cut(s)	1345
Bsp1720I	GCTNAGC	1 cut(s)	372
Bsp19I	CCATGG	2 cut(s)	144, 334
BspACI	CCGC	6 cut(s)	290, 1582, 1642, 1786, 2101, 3049
BspANI	GGCC	8 cut(s)	62, 100, 163, 324, 333, 466, 950, 1526
BspCNI	CTCAG	9 cut(s)	32, 67, 295, 385, 424, 925, 1003, 1709, 2995
BspFNI	CGCG	2 cut(s)	2016, 2442
BspHI	TCATGA	1 cut(s)	3076
BspLI	GGNNCC	3 cut(s)	1101, 1362, 2345
BspMAI	CTGCAG	2 cut(s)	1279, 2131
BspMI	ACCTGC	1 cut(s)	2197
BspPI	GGATC	6 cut(s)	1286, 1418, 1527, 1652, 2790, 2968
BspQI	GCTCTTC	2 cut(s)	2031, 2253
BspT104I	TTCGAA	1 cut(s)	2293
BspT107I	GGYRCC	1 cut(s)	1099
BspTI	CTTAAG	1 cut(s)	451
BspTNI	GGTCTC	2 cut(s)	1776, 2958
BsrBI	CCGCTC	1 cut(s)	1582
BsrDI	GCAATG	2 cut(s)	1398, 3058
BsrGI	TGTACA	1 cut(s)	1345
BssECI	CCNNGG	5 cut(s)	144, 334, 461, 1332, 2340
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	144, 334
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	3 cut(s)	330, 2003, 2341
Bst4CI	ACNGT	7 cut(s)	1021, 1138, 1261, 1962, 2090, 2555, 2588
Bst6I	CTCTTC	8 cut(s)	99, 226, 2025, 2031, 2253, 2595, 2679, 2885
BstAFI	CTTAAG	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstAUI	TGTACA	1 cut(s)	1345
BstBAI	YACGTR	1 cut(s)	1664
BstBI	TTCGAA	1 cut(s)	2293
BstC8I	GCNNGC	5 cut(s)	567, 694, 1590, 1915, 2131
BstDSI	CCRYGG	3 cut(s)	144, 334, 461
BstF5I	GGATG	6 cut(s)	127, 581, 696, 1709, 2119, 2166
BstFNI	CGCG	2 cut(s)	2016, 2442
BstHHI	GCGC	1 cut(s)	1612
BstMAI	GTCTC	3 cut(s)	1776, 2958, 3025
BstNI	CCWGG	3 cut(s)	330, 2003, 2341
BstNSI	RCATGY	2 cut(s)	227, 569
BstSCI	CCNGG	4 cut(s)	328, 950, 2001, 2339
BstSFI	CTRYAG	3 cut(s)	165, 1275, 2127
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	2 cut(s)	2016, 2442
BstV2I	GAAGAC	2 cut(s)	2811, 2916
BstX2I	RGATCY	4 cut(s)	317, 1291, 2182, 2960
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	4 cut(s)	317, 1291, 2182, 2960
Bsu36I	CCTNAGG	2 cut(s)	933, 990
BsuI	GTATCC	1 cut(s)	2043
BsuRI	GGCC	8 cut(s)	62, 100, 163, 324, 333, 466, 950, 1526
BtgI	CCRYGG	3 cut(s)	144, 334, 461
BtrI	CACGTC	2 cut(s)	1970, 2305
BtsCI	GGATG	6 cut(s)	127, 581, 696, 1709, 2119, 2166
BtsI	GCAGTG	1 cut(s)	2208
BtsIMutI	CAGTG	8 cut(s)	303, 648, 827, 1928, 2152, 2208, 2593, 2808
BveI	ACCTGC	1 cut(s)	2197
Cac8I	GCNNGC	5 cut(s)	567, 694, 1590, 1915, 2131
CciI	TCATGA	1 cut(s)	3076
CfoI	GCGC	1 cut(s)	1612
Cfr13I	GGNCC	6 cut(s)	113, 323, 949, 1524, 2344, 2999
Csp6I	GTAC	5 cut(s)	407, 635, 1346, 1876, 2584
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviQI	GTAC	5 cut(s)	407, 635, 1346, 1876, 2584
DraI	TTTAAA	1 cut(s)	1474
DriI	GACNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	2 cut(s)	60, 464
Eam1104I	CTCTTC	8 cut(s)	99, 226, 2025, 2031, 2253, 2595, 2679, 2885
Eam1105I	GACNNNNNGTC	1 cut(s)	665
EarI	CTCTTC	8 cut(s)	99, 226, 2025, 2031, 2253, 2595, 2679, 2885
EciI	GGCGGA	1 cut(s)	1657
Ecl136II	GAGCTC	1 cut(s)	2607
Eco130I	CCWWGG	2 cut(s)	144, 334
Eco24I	GRGCYC	1 cut(s)	2609
Eco31I	GGTCTC	2 cut(s)	1776, 2958
Eco47I	GGWCC	3 cut(s)	113, 2344, 2999
Eco53kI	GAGCTC	1 cut(s)	2607
Eco57I	CTGAAG	5 cut(s)	660, 962, 1266, 1805, 2192
Eco72I	CACGTG	1 cut(s)	1664
Eco81I	CCTNAGG	2 cut(s)	933, 990
EcoICRI	GAGCTC	1 cut(s)	2607
EcoO109I	RGGNCCY	1 cut(s)	2344
EcoRII	CCWGG	3 cut(s)	328, 2001, 2339
EcoT14I	CCWWGG	2 cut(s)	144, 334
EcoT22I	ATGCAT	2 cut(s)	847, 1471
EcoT38I	GRGCYC	1 cut(s)	2609
ErhI	CCWWGG	2 cut(s)	144, 334
FaqI	GGGAC	1 cut(s)	2357
FauNDI	CATATG	1 cut(s)	2194
FbaI	TGATCA	1 cut(s)	3073
FblI	GTMKAC	1 cut(s)	1490
FokI	GGATG	6 cut(s)	134, 568, 683, 1696, 2126, 2153
FriOI	GRGCYC	1 cut(s)	2609
FspBI	CTAG	7 cut(s)	1065, 1116, 2021, 2264, 2417, 2964, 3086
GlaI	GCGC	1 cut(s)	1611
GsuI	CTGGAG	2 cut(s)	669, 851
HaeIII	GGCC	8 cut(s)	62, 100, 163, 324, 333, 466, 950, 1526
HapII	CCGG	3 cut(s)	160, 395, 952
HhaI	GCGC	1 cut(s)	1612
Hin6I	GCGC	1 cut(s)	1610
HinP1I	GCGC	1 cut(s)	1610
HincII	GTYRAC	2 cut(s)	1264, 1704
HindII	GTYRAC	2 cut(s)	1264, 1704
HindIII	AAGCTT	1 cut(s)	1590
HinfI	GANTC	7 cut(s)	533, 721, 914, 1487, 1892, 2840, 3005
HpaI	GTTAAC	1 cut(s)	1704
HpaII	CCGG	3 cut(s)	160, 395, 952
HphI	GGTGA	9 cut(s)	266, 661, 665, 1149, 2320, 2609, 2777, 3038, 3083
Hpy166II	GTNNAC	5 cut(s)	656, 1264, 1491, 1704, 2480
Hpy8I	GTNNAC	5 cut(s)	656, 1264, 1491, 1704, 2480
Hpy99I	CGWCG	1 cut(s)	3110
HpyCH4III	ACNGT	7 cut(s)	1021, 1138, 1261, 1962, 2090, 2555, 2588
HpyCH4IV	ACGT	8 cut(s)	1663, 1756, 1855, 1969, 2080, 2304, 2482, 3108
HpySE526I	ACGT	8 cut(s)	1663, 1756, 1855, 1969, 2080, 2304, 2482, 3108
HspAI	GCGC	1 cut(s)	1610
Ksp22I	TGATCA	1 cut(s)	3073
KspAI	GTTAAC	1 cut(s)	1704
LguI	GCTCTTC	2 cut(s)	2031, 2253
LmnI	GCTCC	7 cut(s)	28, 130, 634, 688, 1866, 2428, 3082
MaeI	CTAG	7 cut(s)	1065, 1116, 2021, 2264, 2417, 2964, 3086
MaeII	ACGT	8 cut(s)	1663, 1756, 1855, 1969, 2080, 2304, 2482, 3108
MaeIII	GTNAC	8 cut(s)	306, 667, 904, 1213, 1255, 1375, 1898, 2282
MbiI	CCGCTC	1 cut(s)	1582
MfeI	CAATTG	3 cut(s)	560, 1419, 2642
MflI	RGATCY	4 cut(s)	317, 1291, 2182, 2960
MhlI	GDGCHC	4 cut(s)	460, 1072, 1967, 2609
MlsI	TGGCCA	1 cut(s)	62
MluI	ACGCGT	1 cut(s)	2440
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	3 cut(s)	527, 1496, 3014
MmeI	TCCRAC	3 cut(s)	208, 724, 1665
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	2 cut(s)	847, 1471
MscI	TGGCCA	1 cut(s)	62
MslI	CAYNNNNRTG	4 cut(s)	200, 1532, 2901, 3051
Msp20I	TGGCCA	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	3 cut(s)	160, 395, 952
MspR9I	CCNGG	4 cut(s)	330, 952, 2003, 2341
MunI	CAATTG	3 cut(s)	560, 1419, 2642
Mva1269I	GAATGC	1 cut(s)	1697
MvaI	CCWGG	3 cut(s)	330, 2003, 2341
MvnI	CGCG	2 cut(s)	2016, 2442
NciI	CCSGG	1 cut(s)	952
NcoI	CCATGG	2 cut(s)	144, 334
NdeI	CATATG	1 cut(s)	2194
NlaIV	GGNNCC	3 cut(s)	1101, 1362, 2345
NmuCI	GTSAC	6 cut(s)	667, 904, 1255, 1375, 1898, 2282
NsiI	ATGCAT	2 cut(s)	847, 1471
NspI	RCATGY	2 cut(s)	227, 569
NspV	TTCGAA	1 cut(s)	2293
PaeI	GCATGC	1 cut(s)	569
PagI	TCATGA	1 cut(s)	3076
PciSI	GCTCTTC	2 cut(s)	2031, 2253
PcsI	WCGNNNNNNNCGW	2 cut(s)	1966, 2086
PctI	GAATGC	1 cut(s)	1697
PfeI	GAWTC	4 cut(s)	721, 914, 1892, 2840
PflMI	CCANNNNNTGG	4 cut(s)	320, 335, 1719, 1870
PfoI	TCCNGGA	1 cut(s)	2001
PleI	GAGTC	3 cut(s)	527, 1495, 3013
PmaCI	CACGTG	1 cut(s)	1664
PmlI	CACGTG	1 cut(s)	1664
PpsI	GAGTC	3 cut(s)	527, 1495, 3013
Ppu21I	YACGTR	1 cut(s)	1664
PpuMI	RGGWCCY	1 cut(s)	2344
PshBI	ATTAAT	2 cut(s)	1392, 1542
Psp124BI	GAGCTC	1 cut(s)	2609
Psp1406I	AACGTT	1 cut(s)	1756
Psp5II	RGGWCCY	1 cut(s)	2344
Psp6I	CCWGG	3 cut(s)	328, 2001, 2339
PspCI	CACGTG	1 cut(s)	1664
PspGI	CCWGG	3 cut(s)	328, 2001, 2339
PspN4I	GGNNCC	3 cut(s)	1101, 1362, 2345
PspPI	GGNCC	6 cut(s)	113, 323, 949, 1524, 2344, 2999
PspPPI	RGGWCCY	1 cut(s)	2344
PstI	CTGCAG	2 cut(s)	1279, 2131
PsuI	RGATCY	4 cut(s)	317, 1291, 2182, 2960
RsaI	GTAC	5 cut(s)	408, 636, 1347, 1877, 2585
RsaNI	GTAC	5 cut(s)	407, 635, 1346, 1876, 2584
RseI	CAYNNNNRTG	4 cut(s)	200, 1532, 2901, 3051
SacI	GAGCTC	1 cut(s)	2609
SapI	GCTCTTC	2 cut(s)	2031, 2253
Sau96I	GGNCC	6 cut(s)	113, 323, 949, 1524, 2344, 2999
SchI	GAGTC	3 cut(s)	527, 1496, 3014
ScrFI	CCNGG	4 cut(s)	330, 952, 2003, 2341
SduI	GDGCHC	4 cut(s)	460, 1072, 1967, 2609
SfcI	CTRYAG	3 cut(s)	165, 1275, 2127
SfiI	GGCCNNNNNGGCC	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	2293
SinI	GGWCC	3 cut(s)	113, 2344, 2999
SmiMI	CAYNNNNRTG	4 cut(s)	200, 1532, 2901, 3051
SmlI	CTYRAG	2 cut(s)	451, 1071
SmoI	CTYRAG	2 cut(s)	451, 1071
SpeI	ACTAGT	2 cut(s)	1064, 1115
SphI	GCATGC	1 cut(s)	569
SsiI	CCGC	6 cut(s)	290, 1582, 1642, 1786, 2101, 3049
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	7 cut(s)	1065, 1116, 2021, 2264, 2417, 2964, 3086
SstI	GAGCTC	1 cut(s)	2609
StyD4I	CCNGG	4 cut(s)	328, 950, 2001, 2339
StyI	CCWWGG	2 cut(s)	144, 334
TaaI	ACNGT	7 cut(s)	1021, 1138, 1261, 1962, 2090, 2555, 2588
TaiI	ACGT	8 cut(s)	1666, 1759, 1858, 1972, 2083, 2307, 2485, 3111
TaqI	TCGA	5 cut(s)	130, 2293, 2372, 2625, 2735
TaqII	GACCGA	2 cut(s)	964, 2931
TatI	WGTACW	3 cut(s)	1345, 1875, 2583
TfiI	GAWTC	4 cut(s)	721, 914, 1892, 2840
TscAI	CASTG	8 cut(s)	303, 655, 834, 1928, 2159, 2208, 2593, 2815
TseFI	GTSAC	6 cut(s)	667, 904, 1255, 1375, 1898, 2282
Tsp45I	GTSAC	6 cut(s)	667, 904, 1255, 1375, 1898, 2282
TspGWI	ACGGA	3 cut(s)	15, 2692, 2814
TspRI	CASTG	8 cut(s)	303, 655, 834, 1928, 2159, 2208, 2593, 2815
Van91I	CCANNNNNTGG	4 cut(s)	320, 335, 1719, 1870
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	3 cut(s)	113, 2344, 2999
VspI	ATTAAT	2 cut(s)	1392, 1542
XapI	RAATTY	7 cut(s)	214, 513, 863, 1300, 1316, 2289, 3098
XbaI	TCTAGA	1 cut(s)	2020
XceI	RCATGY	2 cut(s)	227, 569
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2541, 2921
XmiI	GTMKAC	1 cut(s)	1490
XspI	CTAG	7 cut(s)	1065, 1116, 2021, 2264, 2417, 2964, 3086
Zsp2I	ATGCAT	2 cut(s)	847, 1471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.