Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Forward (+)

2652299 .. 2652921

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03361.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGGTTAATGATTCCAAAGAGAAAAGAAGATCAGGAAAAAATGATGATAAGAAACATAGGAAGAGGCATCAAAGTGATGAAGACCAAACAAATGGAAATGAGAACGATCGGTCTAAAAGGTCTCATGGATCTGGCAGCGACCACAAGAGATCAAGACGGCAGGCATCTGGTCCTGAATCAGATACTGAAAGCATACACCGTAGACATAAGAGAGATCACCGCAGTGGTTCTCGTAGAAGTGGTGATCATGACGAGCTAGAAGATGGGGAATTTGGAGATGTTGGGGAAAGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

100

Amino Acids

11.46

Weight (kDa)

9.09

Isoelectric Point (pI)

102.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	205
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	272
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	212, 257
AvaII	GGWCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmsI	GCATC	2 cut(s)	79, 176
BpiI	GAAGAC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
BspACI	CCGC	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	250
BspPI	GGATC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	129
BssMI	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	165
BstKTI	GATC	6 cut(s)	35, 112, 134, 155, 220, 250
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
BstMCI	CGRYCG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	2 cut(s)	128, 251
CviJI	RGCY	1 cut(s)	259
CviKI_1	RGCY	1 cut(s)	259
DpnI	GATC	6 cut(s)	34, 111, 133, 154, 219, 249
DpnII	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	173
FaeI	CATG	2 cut(s)	131, 254
FaiI	YATR	5 cut(s)	60, 129, 197, 210, 252
FatI	CATG	2 cut(s)	127, 250
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	131, 254
HinfI	GANTC	2 cut(s)	14, 179
HphI	GGTGA	2 cut(s)	212, 257
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	36, 156, 176, 251
Hpy8I	GTNNAC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	131, 254
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
LpnPI	CCDG	5 cut(s)	21, 120, 149, 156, 189
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	79, 176
MaeI	CTAG	1 cut(s)	260
MalI	GATC	6 cut(s)	34, 111, 133, 154, 219, 249
MboI	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
MboII	GAAGA	4 cut(s)	42, 76, 95, 275
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	1 cut(s)	272
MnlI	CCTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	2 cut(s)	75, 225
NdeII	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
NlaIII	CATG	2 cut(s)	131, 254
OliI	CACNNNNGTG	1 cut(s)	225
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	14, 179
PkrI	GCNGC	1 cut(s)	140
Ple19I	CGATCG	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	131
PvuI	CGATCG	1 cut(s)	112
RseI	CAYNNNNRTG	2 cut(s)	75, 225
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	6 cut(s)	32, 109, 131, 152, 217, 247
Sau96I	GGNCC	1 cut(s)	173
SetI	ASST	3 cut(s)	9, 125, 261
SfaNI	GCATC	2 cut(s)	79, 176
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	75, 225
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	203
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	14, 179
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.