FvH4_2g03630

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013602
Physical Location & Seq
Reverse (-)
2942018 .. 2943982
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03630.t1

Sequence Viewer

Length: 909 bp
ATGTCTTCTTCTTCCTCCTCCTCCGCCATCTTCCTCCGCCGCCTCATCGACTCCGAGCCCCACCACCTCCCCTCCCTTGACTACCTCTCCCTGTGCCGTGACCGCACCGTCGACGTCACCGCCCGTCAGGACTCCATCAACTGGATCTTGAGAGTCCACGCCCACTACCGTTTTGCTCCTCTCACGGCGTTCCTCTCCGTCAACTACTTCGACCGTTTCCTCTCCACTCGCTCCCTCCCGCGACAGCATGGGCGGTGGCCGTTTCAGCTGCTCTCCGTGGCGTGTTTGTCTTTAGCGGCCAAGATGGAGGAGCCCCATGTCCCCTACATCATCGACCTTCAAATCTTCGAGCCCAAATTCGTCTTCGAACCCAAAACTGTTCAAAGAATGGAGCTTTGGGTCATGTCTACTCTCAACTGGAGACTCCGCTCCGTCACACCCTTCGATTTCCTCCCCCATTTCATCAACAAGCTCCCCGCTTCTTCTCCTCTCAACCTTTTCGAGGCTTCTTCTGATCTAGTTTTCAAAACCATACGAGTGATTGATTTCTTGGGTTTTACACCGTCGACTGTGGCGGCGGCGGCTGTGCTCTGCGCCGCCGGCGAAAGCGTCGAGTCTGCGGCGGCGGAAGACCAAGCAGGAGCGGTGTCTGACGAAGGAGTAAACAAAGAAAATGTGAGAAGCTGTCACCAACTCATGGAGGAGTACCTGATCGACACGTGCCCCTCATCCTCCCGCCATAAAGCCGGTAGCCCCGCCATGCCTCCTCCGTCCGCCCCCGGCAGCCCGGTGGGCGTGCTCGATGCGGCCGCATGCGTGAGTTGCGACACGCACTCGTCTACCGTCCAAGCCGAGCCGCCCCCAAAACGTCCCCGAACCTCTTCCCCGGACAATGTACAACCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

303

Amino Acids

33.36

Weight (kDa)

6.2

Isoelectric Point (pI)

73.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 15 - 143 5e-30 Cyclin, N-terminal domain
Cyclin_C PF02984 145 - 248 1.3e-08 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AatII GACGTC 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 141, 697
AccBSI CCGCTC 2 cut(s) 429, 644
AccI GTMKAC 4 cut(s) 111, 407, 566, 839
AccII CGCG 1 cut(s) 241
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 3 cut(s) 257, 297, 807
AcsI RAATTY 1 cut(s) 356
AcvI CACGTG 1 cut(s) 720
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 2 cut(s) 707, 897
AfiI CCNNNNNNNGG 3 cut(s) 141, 502, 697
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 3 cut(s) 341, 383, 526
AjuI GAANNNNNNNTTGG 4 cut(s) 347, 379, 379, 411
AluBI AGCT 4 cut(s) 268, 394, 472, 684
AluI AGCT 4 cut(s) 268, 394, 472, 684
Alw21I GWGCWC 2 cut(s) 591, 801
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 1 cut(s) 152
AoxI GGCC 3 cut(s) 257, 297, 807
ApeKI GCWGC 2 cut(s) 268, 783
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 880
AspLEI GCGC 1 cut(s) 596
AsuC2I CCSGG 3 cut(s) 780, 788, 887
AsuHPI GGTGA 2 cut(s) 109, 680
AsuII TTCGAA 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 725
BanII GRGCYC 3 cut(s) 60, 315, 354
BbrPI CACGTG 1 cut(s) 720
BbsI GAAGAC 2 cut(s) 355, 636
Bbv12I GWGCWC 2 cut(s) 591, 801
BbvI GCAGC 2 cut(s) 255, 795
BccI CCATC 3 cut(s) 35, 143, 298
BceAI ACGGC 3 cut(s) 81, 201, 244
BcnI CCSGG 3 cut(s) 780, 788, 887
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 792
Bme1390I CCNGG 3 cut(s) 780, 788, 887
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 3 cut(s) 780, 788, 887
BmsI GCATC 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 355, 636
BpmI CTGGAG 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 780, 788, 887
BsaAI YACGTR 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 276, 778, 885
BsaXI ACNNNNNCTCC 4 cut(s) 56, 71, 86, 101
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 502, 697
Bse118I RCCGGY 2 cut(s) 599, 746
Bse1I ACTGG 2 cut(s) 146, 422
BseDI CCNNGG 3 cut(s) 276, 778, 885
BseGI GGATG 1 cut(s) 728
BseLI CCNNNNNNNGG 3 cut(s) 141, 502, 697
BseNI ACTGG 2 cut(s) 146, 422
BseRI GAGGAG 7 cut(s) 7, 10, 168, 323, 477, 716, 756
BseSI GKGCMC 1 cut(s) 725
BseX3I CGGCCG 1 cut(s) 807
BseXI GCAGC 2 cut(s) 255, 795
Bsh1236I CGCG 1 cut(s) 241
Bsh1285I CGRYCG 2 cut(s) 214, 810
BshFI GGCC 3 cut(s) 259, 299, 809
BsiEI CGRYCG 2 cut(s) 214, 810
BsiHKAI GWGCWC 2 cut(s) 591, 801
BsiSI CCGG 5 cut(s) 600, 747, 780, 788, 887
BslFI GGGAC 2 cut(s) 305, 855
BslI CCNNNNNNNGG 3 cut(s) 141, 502, 697
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 305, 855
BsnI GGCC 3 cut(s) 259, 299, 809
Bsp119I TTCGAA 1 cut(s) 366
Bsp1286I GDGCHC 6 cut(s) 60, 315, 354, 591, 725, 801
Bsp1407I TGTACA 1 cut(s) 895
Bsp143I GATC 3 cut(s) 144, 514, 711
BspANI GGCC 3 cut(s) 259, 299, 809
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 366
BsrBI CCGCTC 2 cut(s) 429, 644
BsrFI RCCGGY 2 cut(s) 599, 746
BsrGI TGTACA 1 cut(s) 895
BsrI ACTGG 2 cut(s) 146, 422
BssAI RCCGGY 2 cut(s) 599, 746
BssECI CCNNGG 3 cut(s) 276, 778, 885
BssMI GATC 3 cut(s) 144, 514, 711
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 7 cut(s) 109, 170, 215, 379, 564, 571, 844
Bst6I CTCTTC 1 cut(s) 886
BstACI GRCGYC 1 cut(s) 114
BstAUI TGTACA 1 cut(s) 895
BstBAI YACGTR 1 cut(s) 720
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 601, 797, 814
BstDSI CCRYGG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 1 cut(s) 728
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 3 cut(s) 147, 517, 714
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 3 cut(s) 144, 514, 711
BstMCI CGRYCG 2 cut(s) 214, 810
BstMWI GCNNNNNNNGC 6 cut(s) 102, 265, 581, 600, 792, 822
BstNSI RCATGY 1 cut(s) 816
BstSCI CCNGG 3 cut(s) 778, 786, 885
BstSLI GKGCMC 1 cut(s) 725
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 255, 795
BstV2I GAAGAC 2 cut(s) 355, 636
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 807
BsuRI GGCC 3 cut(s) 259, 299, 809
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 728
Cac8I GCNNGC 3 cut(s) 601, 797, 814
CciNI GCGGCCGC 1 cut(s) 807
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 2 cut(s) 599, 746
CseI GACGC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 706, 896
CviAII CATG 6 cut(s) 248, 317, 403, 697, 760, 813
CviQI GTAC 2 cut(s) 706, 896
DpnI GATC 3 cut(s) 146, 516, 713
DpnII GATC 3 cut(s) 144, 514, 711
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 3 cut(s) 257, 297, 807
EagI CGGCCG 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 886
EarI CTCTTC 1 cut(s) 886
EciI GGCGGA 4 cut(s) 13, 26, 641, 763
EclXI CGGCCG 1 cut(s) 807
Eco24I GRGCYC 3 cut(s) 60, 315, 354
Eco52I CGGCCG 1 cut(s) 807
Eco72I CACGTG 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoT38I GRGCYC 3 cut(s) 60, 315, 354
FaeI CATG 6 cut(s) 251, 320, 406, 700, 763, 816
FaiI YATR 8 cut(s) 249, 318, 404, 533, 698, 741, 761, 814
FaqI GGGAC 2 cut(s) 305, 855
FatI CATG 6 cut(s) 247, 316, 402, 696, 759, 812
FauI CCCGC 4 cut(s) 246, 484, 743, 763
FblI GTMKAC 4 cut(s) 111, 407, 566, 839
FokI GGATG 1 cut(s) 715
FriOI GRGCYC 3 cut(s) 60, 315, 354
FspBI CTAG 1 cut(s) 518
GlaI GCGC 1 cut(s) 595
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 3 cut(s) 259, 299, 809
HapII CCGG 5 cut(s) 600, 747, 780, 788, 887
HgaI GACGC 1 cut(s) 598
HhaI GCGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 6 cut(s) 251, 320, 406, 700, 763, 816
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 3 cut(s) 112, 202, 567
HindII GTYRAC 3 cut(s) 112, 202, 567
HinfI GANTC 5 cut(s) 50, 131, 153, 423, 614
HpaII CCGG 5 cut(s) 600, 747, 780, 788, 887
HphI GGTGA 2 cut(s) 109, 680
Hpy166II GTNNAC 7 cut(s) 112, 157, 202, 408, 567, 664, 840
Hpy188I TCNGA 3 cut(s) 55, 514, 652
Hpy188III TCNNGA 2 cut(s) 128, 148
Hpy8I GTNNAC 7 cut(s) 112, 157, 202, 408, 567, 664, 840
Hpy99I CGWCG 4 cut(s) 113, 116, 568, 614
HpyAV CCTTC 3 cut(s) 347, 451, 650
HpyCH4III ACNGT 7 cut(s) 109, 170, 215, 379, 564, 571, 844
HpyCH4IV ACGT 3 cut(s) 114, 719, 868
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 265, 581, 600, 792, 822
HpySE526I ACGT 3 cut(s) 114, 719, 868
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 6 cut(s) 251, 320, 406, 700, 763, 816
HspAI GCGC 1 cut(s) 594
KroI GCCGGC 1 cut(s) 599
KroNI GCCGGC 1 cut(s) 601
Kzo9I GATC 3 cut(s) 144, 514, 711
LmnI GCTCC 7 cut(s) 181, 236, 310, 391, 434, 477, 641
Lsp1109I GCAGC 2 cut(s) 255, 795
LweI GCATC 1 cut(s) 793
MaeI CTAG 1 cut(s) 518
MaeII ACGT 3 cut(s) 114, 719, 868
MaeIII GTNAC 4 cut(s) 98, 115, 433, 686
MalI GATC 3 cut(s) 146, 516, 713
MbiI CCGCTC 2 cut(s) 429, 644
MboI GATC 3 cut(s) 144, 514, 711
MboII GAAGA 8 cut(s) 3, 22, 337, 355, 474, 501, 641, 873
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 6 cut(s) 60, 315, 354, 591, 725, 801
MluCI AATT 1 cut(s) 356
MlyI GAGTC 5 cut(s) 44, 125, 162, 417, 623
MreI CGCCGGCG 1 cut(s) 599
MroNI GCCGGC 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 880
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 5 cut(s) 600, 747, 780, 788, 887
MspR9I CCNGG 3 cut(s) 780, 788, 887
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 6 cut(s) 102, 265, 581, 600, 792, 822
NaeI GCCGGC 1 cut(s) 601
NciI CCSGG 3 cut(s) 780, 788, 887
NdeII GATC 3 cut(s) 144, 514, 711
NgoMIV GCCGGC 1 cut(s) 599
NlaIII CATG 6 cut(s) 251, 320, 406, 700, 763, 816
NlaIV GGNNCC 1 cut(s) 312
NmeAIII GCCGAG 1 cut(s) 877
NmuCI GTSAC 4 cut(s) 98, 115, 433, 686
NotI GCGGCCGC 1 cut(s) 807
NspI RCATGY 1 cut(s) 816
NspV TTCGAA 1 cut(s) 366
PaeI GCATGC 1 cut(s) 816
PdiI GCCGGC 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 880
PflMI CCANNNNNTGG 2 cut(s) 141, 697
PleI GAGTC 5 cut(s) 44, 125, 161, 417, 622
PmaCI CACGTG 1 cut(s) 720
PmlI CACGTG 1 cut(s) 720
PpsI GAGTC 5 cut(s) 44, 125, 161, 417, 622
Ppu21I YACGTR 1 cut(s) 720
PspCI CACGTG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 707, 897
RsaNI GTAC 2 cut(s) 706, 896
RseI CAYNNNNRTG 1 cut(s) 536
SalI GTCGAC 2 cut(s) 110, 565
Sau3AI GATC 3 cut(s) 144, 514, 711
SchI GAGTC 5 cut(s) 44, 125, 162, 417, 623
ScrFI CCNGG 3 cut(s) 780, 788, 887
SduI GDGCHC 6 cut(s) 60, 315, 354, 591, 725, 801
SfaNI GCATC 1 cut(s) 793
SfuI TTCGAA 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 599
SgrDI CGTCGACG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SphI GCATGC 1 cut(s) 816
Sse9I AATT 1 cut(s) 356
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 3 cut(s) 778, 786, 885
TaaI ACNGT 7 cut(s) 109, 170, 215, 379, 564, 571, 844
TaiI ACGT 3 cut(s) 117, 722, 871
TasI AATT 1 cut(s) 356
TatI WGTACW 1 cut(s) 895
TseFI GTSAC 4 cut(s) 98, 115, 433, 686
TseI GCWGC 2 cut(s) 268, 783
Tsp45I GTSAC 4 cut(s) 98, 115, 433, 686
TspDTI ATGAA 1 cut(s) 451
TspGWI ACGGA 4 cut(s) 187, 265, 421, 759
Van91I CCANNNNNTGG 2 cut(s) 141, 697
XagI CCTNNNNNAGG 1 cut(s) 500
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 816
XmiI GTMKAC 4 cut(s) 111, 407, 566, 839
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 1 cut(s) 518
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.