RchiOBHm_Chr6g0252631

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013602
Physical Location & Seq
Reverse (-)
7799734 .. 7802487
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22654

Sequence Viewer

Length: 912 bp
ATGTCTTCTTCTTCCTCCTCCTCCGCCCTCCGCCGCCTGATCGACTCCGACTCCCATCACCTCCCGTCCCCTAACTATCTCTCCCTCTGCCGTGACCGCACCGTCGACGTCACCGCCCGCCAGGACTCCATCAACTGGATCTTGAAAGTCCACTCCCACTACCGCTTTGCCCCGCTCACGGCGTTCCTCTCCGTCAACTACTTGGACCGATTCCTCTCCACCCGCTCCCTCCCGCAACAGCATGGGCGGTGGCCGTTTCAGCTGCTCTCGGTGGCGTGCTTGTCTTTAGCGGCCAAGATGGAGGAGCCTAATGTTCCCTACATCGTCGACCTCCAAATCTTCGAGCCAAGATTCGTCTTCGAACCCAAAACGGTCCAAAGAATGGAGCTTTTGGTCATGTCCAGTCTCAACTGGAGACTCCGCTCCGTCACACCCTTCGATTTCCTCCCCCATTTCATCTCTAAGCTCCCCGCTTCTTCCCCTCTCGACCTTCACGAGGCTTCTTCTGATCTGGTTCTCAAAACCATACGAGTGATTGATTTCTTGGGTTTTTCACCGTCGACGGTGGCGGCGGCGGCTGTGCTCTGCGCCACTGGCGTAAGCGTCGAGTCTGCGGCGGCGGAAGACCAAGCAGGAGCGTTGTTTGACGAAAGAGTAAACAAAGAAAGTGTGAGAAGCTGTCACCAACTCATGGAGGAGTACCTGATCGACACGTGTCCCTCATCCTGCCGCCATAAAGCTGGTAGCTCAGCCCCGCCTCCGTCCGCGCCCGCCAGCCCCGTCGGTGTGCTCGACGCGGCCGCTTGCAAGAGTTGCGACACCCGCTCTGAGAATCCGGGGGCCTTAATCCAAGCGGAGCCGCCCCACAAACGTCCCCGAATTTCTCCTCCGGAAAATGTACAATCTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

303

Amino Acids

33.35

Weight (kDa)

6.55

Isoelectric Point (pI)

76.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 13 - 141 3.1e-30 Cyclin, N-terminal domain
Cyclin_C PF02984 143 - 246 1.3e-09 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 3 cut(s) 135, 382, 691
AccBSI CCGCTC 4 cut(s) 175, 225, 423, 825
AccI GTMKAC 3 cut(s) 105, 327, 560
AccII CGCG 2 cut(s) 767, 797
AccIII TCCGGA 1 cut(s) 889
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 3 cut(s) 251, 291, 798
AcsI RAATTY 1 cut(s) 879
AcvI CACGTG 1 cut(s) 714
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 701, 900
AfiI CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 691
AflIII ACRYGT 2 cut(s) 711, 713
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 6 cut(s) 262, 388, 466, 678, 740, 747
AluI AGCT 6 cut(s) 262, 388, 466, 678, 740, 747
Alw21I GWGCWC 2 cut(s) 585, 792
Alw26I GTCTC 2 cut(s) 409, 410
AlwI GGATC 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 889
AoxI GGCC 4 cut(s) 251, 291, 798, 840
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 879
AspLEI GCGC 2 cut(s) 590, 769
AspS9I GGNCC 3 cut(s) 205, 373, 840
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 4 cut(s) 50, 103, 546, 674
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 2 cut(s) 205, 373
BauI CACGAG 1 cut(s) 494
BbrPI CACGTG 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 349, 630
Bbv12I GWGCWC 2 cut(s) 585, 792
BbvI GCAGC 1 cut(s) 249
BccI CCATC 3 cut(s) 63, 137, 292
BceAI ACGGC 3 cut(s) 75, 195, 238
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 409, 410
BlpI GCTNAGC 1 cut(s) 748
Bme1390I CCNGG 2 cut(s) 122, 837
Bme18I GGWCC 2 cut(s) 205, 373
BmgT120I GGNCC 3 cut(s) 205, 373, 840
BmiI GGNNCC 3 cut(s) 306, 841, 858
BmrFI CCNGG 2 cut(s) 122, 837
BoxI GACNNNNGTC 1 cut(s) 714
BpiI GAAGAC 2 cut(s) 349, 630
BpmI CTGGAG 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 748
Bpu14I TTCGAA 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 837
BsaAI YACGTR 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 836
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 65, 95
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 691
Bse1I ACTGG 4 cut(s) 140, 402, 416, 598
BseAI TCCGGA 1 cut(s) 889
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 836
BseGI GGATG 1 cut(s) 722
BseLI CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 691
BseMII CTCAG 2 cut(s) 762, 819
BseNI ACTGG 4 cut(s) 140, 402, 416, 598
BseRI GAGGAG 5 cut(s) 7, 10, 317, 710, 876
BseX3I CGGCCG 1 cut(s) 798
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 767, 797
Bsh1285I CGRYCG 1 cut(s) 801
BshFI GGCC 4 cut(s) 253, 293, 800, 842
BsiEI CGRYCG 1 cut(s) 801
BsiHKAI GWGCWC 2 cut(s) 585, 792
BsiSI CCGG 2 cut(s) 836, 890
BslFI GGGAC 3 cut(s) 52, 702, 858
BslI CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 691
BsmAI GTCTC 2 cut(s) 409, 410
BsmFI GGGAC 3 cut(s) 52, 702, 858
BsnI GGCC 4 cut(s) 253, 293, 800, 842
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 585, 792
Bsp13I TCCGGA 1 cut(s) 889
Bsp1407I TGTACA 1 cut(s) 898
Bsp143I GATC 4 cut(s) 39, 138, 508, 705
Bsp1720I GCTNAGC 1 cut(s) 748
BspANI GGCC 4 cut(s) 253, 293, 800, 842
BspCNI CTCAG 2 cut(s) 761, 820
BspEI TCCGGA 1 cut(s) 889
BspFNI CGCG 2 cut(s) 767, 797
BspLI GGNNCC 3 cut(s) 306, 841, 858
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 360
BsrBI CCGCTC 4 cut(s) 175, 225, 423, 825
BsrGI TGTACA 1 cut(s) 898
BsrI ACTGG 4 cut(s) 140, 402, 416, 598
BssECI CCNNGG 1 cut(s) 836
BssMI GATC 4 cut(s) 39, 138, 508, 705
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 4 cut(s) 103, 373, 558, 565
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 813
BstAUI TGTACA 1 cut(s) 898
BstBAI YACGTR 1 cut(s) 714
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 5 cut(s) 118, 277, 771, 775, 805
BstDEI CTNAG 3 cut(s) 462, 748, 828
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 722
BstFNI CGCG 2 cut(s) 767, 797
BstHHI GCGC 2 cut(s) 590, 769
BstKTI GATC 4 cut(s) 42, 141, 511, 708
BstMAI GTCTC 2 cut(s) 409, 410
BstMBI GATC 4 cut(s) 39, 138, 508, 705
BstMCI CGRYCG 1 cut(s) 801
BstMWI GCNNNNNNNGC 6 cut(s) 96, 259, 575, 594, 813, 822
BstNI CCWGG 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 714
BstSCI CCNGG 2 cut(s) 120, 835
BstUI CGCG 2 cut(s) 767, 797
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 2 cut(s) 349, 630
BstX2I RGATCY 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 138
BstZI CGGCCG 1 cut(s) 798
BsuRI GGCC 4 cut(s) 253, 293, 800, 842
BtsCI GGATG 1 cut(s) 722
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 5 cut(s) 118, 277, 771, 775, 805
CciNI GCGGCCGC 1 cut(s) 798
CfoI GCGC 2 cut(s) 590, 769
Cfr13I GGNCC 3 cut(s) 205, 373, 840
CseI GACGC 2 cut(s) 592, 803
Csp6I GTAC 2 cut(s) 700, 899
CviAII CATG 3 cut(s) 242, 397, 691
CviQI GTAC 2 cut(s) 700, 899
DdeI CTNAG 3 cut(s) 462, 748, 828
DpnI GATC 4 cut(s) 41, 140, 510, 707
DpnII GATC 4 cut(s) 39, 138, 508, 705
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 3 cut(s) 251, 291, 798
EagI CGGCCG 1 cut(s) 798
EciI GGCGGA 3 cut(s) 13, 20, 635
EclXI CGGCCG 1 cut(s) 798
Eco47I GGWCC 2 cut(s) 205, 373
Eco52I CGGCCG 1 cut(s) 798
Eco72I CACGTG 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 840
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 245, 400, 694
FaiI YATR 5 cut(s) 243, 398, 527, 692, 735
FaqI GGGAC 3 cut(s) 52, 702, 858
FatI CATG 3 cut(s) 241, 396, 690
FauI CCCGC 8 cut(s) 125, 180, 230, 240, 478, 762, 778, 830
FblI GTMKAC 3 cut(s) 105, 327, 560
FokI GGATG 1 cut(s) 709
GlaI GCGC 2 cut(s) 589, 768
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 4 cut(s) 253, 293, 800, 842
HapII CCGG 2 cut(s) 836, 890
HgaI GACGC 2 cut(s) 592, 803
HhaI GCGC 2 cut(s) 590, 769
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 245, 400, 694
Hin6I GCGC 2 cut(s) 588, 767
HinP1I GCGC 2 cut(s) 588, 767
HincII GTYRAC 4 cut(s) 106, 196, 328, 561
HindII GTYRAC 4 cut(s) 106, 196, 328, 561
HinfI GANTC 8 cut(s) 44, 50, 125, 210, 351, 417, 608, 832
HpaII CCGG 2 cut(s) 836, 890
HphI GGTGA 4 cut(s) 50, 103, 546, 674
Hpy166II GTNNAC 6 cut(s) 106, 151, 196, 328, 561, 658
Hpy188I TCNGA 3 cut(s) 49, 508, 829
Hpy188III TCNNGA 4 cut(s) 142, 485, 494, 890
Hpy8I GTNNAC 6 cut(s) 106, 151, 196, 328, 561, 658
Hpy99I CGWCG 8 cut(s) 107, 110, 329, 562, 565, 608, 785, 797
HpyAV CCTTC 2 cut(s) 445, 500
HpyCH4III ACNGT 4 cut(s) 103, 373, 558, 565
HpyCH4IV ACGT 3 cut(s) 108, 713, 871
HpyCH4V TGCA 1 cut(s) 807
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 259, 575, 594, 813, 822
HpyF3I CTNAG 3 cut(s) 462, 748, 828
HpySE526I ACGT 3 cut(s) 108, 713, 871
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 245, 400, 694
HspAI GCGC 2 cut(s) 588, 767
Kpn2I TCCGGA 1 cut(s) 889
Kzo9I GATC 4 cut(s) 39, 138, 508, 705
LmnI GCTCC 7 cut(s) 230, 304, 385, 428, 471, 635, 856
Lsp1109I GCAGC 1 cut(s) 249
MaeII ACGT 3 cut(s) 108, 713, 871
MaeIII GTNAC 4 cut(s) 92, 109, 427, 680
MalI GATC 4 cut(s) 41, 140, 510, 707
MbiI CCGCTC 4 cut(s) 175, 225, 423, 825
MboI GATC 4 cut(s) 39, 138, 508, 705
MboII GAAGA 6 cut(s) 3, 331, 349, 468, 495, 635
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 585, 792
MluCI AATT 1 cut(s) 879
MlyI GAGTC 5 cut(s) 38, 44, 119, 411, 617
MmeI TCCRAC 1 cut(s) 72
MroI TCCGGA 1 cut(s) 889
MseI TTAA 1 cut(s) 845
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 2 cut(s) 836, 890
MspR9I CCNGG 2 cut(s) 122, 837
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 767, 797
MwoI GCNNNNNNNGC 6 cut(s) 96, 259, 575, 594, 813, 822
NciI CCSGG 1 cut(s) 837
NdeII GATC 4 cut(s) 39, 138, 508, 705
NlaIII CATG 3 cut(s) 245, 400, 694
NlaIV GGNNCC 3 cut(s) 306, 841, 858
NmuCI GTSAC 4 cut(s) 92, 109, 427, 680
NotI GCGGCCGC 1 cut(s) 798
NspV TTCGAA 1 cut(s) 360
PcsI WCGNNNNNNNCGW 2 cut(s) 492, 789
PfeI GAWTC 3 cut(s) 210, 351, 832
PflMI CCANNNNNTGG 3 cut(s) 135, 382, 691
PleI GAGTC 5 cut(s) 38, 44, 119, 411, 616
PmaCI CACGTG 1 cut(s) 714
PmlI CACGTG 1 cut(s) 714
PpsI GAGTC 5 cut(s) 38, 44, 119, 411, 616
Ppu21I YACGTR 1 cut(s) 714
PshAI GACNNNNGTC 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 120
PspCI CACGTG 1 cut(s) 714
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 306, 841, 858
PspPI GGNCC 3 cut(s) 205, 373, 840
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 2 cut(s) 701, 900
RsaNI GTAC 2 cut(s) 700, 899
RseI CAYNNNNRTG 1 cut(s) 530
SalI GTCGAC 3 cut(s) 104, 326, 559
SaqAI TTAA 1 cut(s) 845
Sau3AI GATC 4 cut(s) 39, 138, 508, 705
Sau96I GGNCC 3 cut(s) 205, 373, 840
SchI GAGTC 5 cut(s) 38, 44, 119, 411, 617
ScrFI CCNGG 2 cut(s) 122, 837
SduI GDGCHC 2 cut(s) 585, 792
SfuI TTCGAA 1 cut(s) 360
SgrDI CGTCGACG 2 cut(s) 104, 559
SinI GGWCC 2 cut(s) 205, 373
SmiMI CAYNNNNRTG 1 cut(s) 530
Sse9I AATT 1 cut(s) 879
StyD4I CCNGG 2 cut(s) 120, 835
TaaI ACNGT 4 cut(s) 103, 373, 558, 565
TaiI ACGT 3 cut(s) 111, 716, 874
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 879
TatI WGTACW 1 cut(s) 898
TfiI GAWTC 3 cut(s) 210, 351, 832
Tru1I TTAA 1 cut(s) 845
Tru9I TTAA 1 cut(s) 845
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 4 cut(s) 92, 109, 427, 680
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 4 cut(s) 92, 109, 427, 680
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 4 cut(s) 181, 415, 750, 897
TspRI CASTG 1 cut(s) 598
Van91I CCANNNNNTGG 3 cut(s) 135, 382, 691
VpaK11BI GGWCC 2 cut(s) 205, 373
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 879
XmiI GTMKAC 3 cut(s) 105, 327, 560
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.