Rmu_co8165678.1_g000001

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8165678.1
OG0013602
Physical Location & Seq
Forward (+)
92 .. 493
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8165678.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgtcttcttcctcctcctcctccgccctccgccgcctgatcgactccgactcccatcacctcccgtcccctaactacctctccctctgccgtgaccgcaccgtcgacgtcaccgcccgccaggactccatcaactggatcttgaaagtccactcccactaccgctttgccccgctcacggcgttcctctccgtcaactacttggaccgattcctctccacccgctccctcccggtaactctctctttctccgagcaaaacctcttcgtcttagtgggtttgttttcttattgtttgtgtacgttgttttctttattgcctgcagcaacagcatgggcggtggccgtttcagctgctctcagtggcgtgcttgtctttagcggccaagatggaggagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

133

Amino Acids

14.5

Weight (kDa)

7.79

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 135
AccBSI CCGCTC 2 cut(s) 175, 225
AccI GTMKAC 1 cut(s) 105
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 342, 382
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 2 cut(s) 135, 178
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AlwI GGATC 1 cut(s) 146
AoxI GGCC 2 cut(s) 342, 382
ApeKI GCWGC 2 cut(s) 323, 353
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 50, 103
AvaII GGWCC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 335, 340
BccI CCATC 3 cut(s) 63, 137, 383
BceAI ACGGC 3 cut(s) 75, 195, 329
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 4 cut(s) 34, 324, 354, 382
BlsI GCNGC 4 cut(s) 35, 325, 355, 383
Bme1390I CCNGG 2 cut(s) 122, 233
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 2 cut(s) 122, 233
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 108
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 178
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 135, 178
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 3 cut(s) 4, 7, 10
BseXI GCAGC 2 cut(s) 335, 340
BshFI GGCC 2 cut(s) 344, 384
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 135, 178
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 344, 384
Bsp143I GATC 2 cut(s) 39, 138
BspANI GGCC 2 cut(s) 344, 384
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 146
BsrBI CCGCTC 2 cut(s) 175, 225
BsrI ACTGG 1 cut(s) 140
BssMI GATC 2 cut(s) 39, 138
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 118, 321, 368
BstDEI CTNAG 2 cut(s) 271, 359
BstKTI GATC 2 cut(s) 42, 141
BstMBI GATC 2 cut(s) 39, 138
BstMWI GCNNNNNNNGC 3 cut(s) 96, 329, 350
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 120, 231
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 335, 340
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 2 cut(s) 344, 384
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 3 cut(s) 118, 321, 368
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 300
CviAII CATG 1 cut(s) 333
CviJI RGCY 4 cut(s) 344, 353, 384, 398
CviKI_1 RGCY 4 cut(s) 344, 353, 384, 398
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 2 cut(s) 271, 359
DpnI GATC 2 cut(s) 41, 140
DpnII GATC 2 cut(s) 39, 138
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 342, 382
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 2 cut(s) 13, 20
Eco47I GGWCC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 336
FaiI YATR 1 cut(s) 334
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 332
FauI CCCGC 3 cut(s) 125, 180, 230
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 34, 324, 354, 382
Fsp4HI GCNGC 4 cut(s) 34, 324, 354, 382
GluI GCNGC 4 cut(s) 34, 324, 354, 382
HaeIII GGCC 2 cut(s) 344, 384
HapII CCGG 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 336
HincII GTYRAC 2 cut(s) 106, 196
HindII GTYRAC 2 cut(s) 106, 196
HinfI GANTC 4 cut(s) 44, 50, 125, 210
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 50, 103
Hpy166II GTNNAC 4 cut(s) 106, 151, 196, 300
Hpy188I TCNGA 2 cut(s) 49, 253
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 4 cut(s) 106, 151, 196, 300
Hpy99I CGWCG 2 cut(s) 107, 110
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 108, 302
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 329, 350
HpyF3I CTNAG 2 cut(s) 271, 359
HpySE526I ACGT 2 cut(s) 108, 302
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 336
Kzo9I GATC 2 cut(s) 39, 138
LmnI GCTCC 2 cut(s) 230, 395
LpnPI CCDG 6 cut(s) 50, 107, 121, 134, 246, 333
Lsp1109I GCAGC 2 cut(s) 335, 340
MaeII ACGT 2 cut(s) 108, 302
MaeIII GTNAC 3 cut(s) 92, 109, 235
MalI GATC 2 cut(s) 41, 140
MbiI CCGCTC 2 cut(s) 175, 225
MboI GATC 2 cut(s) 39, 138
MboII GAAGA 1 cut(s) 256
MflI RGATCY 1 cut(s) 138
MlyI GAGTC 3 cut(s) 38, 44, 119
MmeI TCCRAC 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 122, 233
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 96, 329, 350
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 39, 138
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 92, 109
PfeI GAWTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 4 cut(s) 35, 325, 355, 383
PleI GAGTC 3 cut(s) 38, 44, 119
PpsI GAGTC 3 cut(s) 38, 44, 119
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SalI GTCGAC 1 cut(s) 104
SatI GCNGC 4 cut(s) 34, 324, 354, 382
Sau3AI GATC 2 cut(s) 39, 138
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 3 cut(s) 38, 44, 119
ScrFI CCNGG 2 cut(s) 122, 233
SetI ASST 6 cut(s) 63, 81, 111, 264, 305, 355
SfcI CTRYAG 1 cut(s) 321
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 120, 231
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 111, 305
TaqI TCGA 2 cut(s) 42, 105
TaqII GACCGA 1 cut(s) 222
TauI GCSGC 2 cut(s) 36, 384
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 2 cut(s) 92, 109
TseI GCWGC 2 cut(s) 323, 353
Tsp45I GTSAC 2 cut(s) 92, 109
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 105
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.