Rh6AG053900

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013602
Physical Location & Seq
Reverse (-)
7948394 .. 7950448
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG053900.1

Sequence Viewer

Length: 561 bp
ATGTCTTCTTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCGCCCTCCGCCGCCTGATCGACTCCGACTCCCATCACCTACCGTCCCCTAACTACCTCTCCCTCTGCCGTGACCGCACCGTCGACGTCACCGCCCGCCAGGACTCCATCAACTGGATCTTGAAAGTCCACTCCCACTACCGCTTTGCCCCGCTCACGGCGTTCCTCTCCGTCAACTACTTGGACCGATTCCTCTCCACCCGCTCCCTCCCGCAACAGCATGGGCGGTGGCCGTTTCAGCTGCTCTCGGTGGCGTGCTTGTCTTTAGCGGCCAAGATGGAGGAGCCTAATGTCCCCTACATCGTCGACCTCCAAATCTTCGAGCCAAGATTCGTCTTCGAACCCAAAACGGTCCAAAGAATGGAGCTTTTGGTCATGTCCTGTCTCAACTGGAGACTCCGCTCCGTCACACCCTTCGATTTCCTCCCCCATTTCATCTCTAAGCTCCCCGCTTCTGCTCCTCTCGACCTTCTTGAGGCTTCTTCTGATCTGGTTCTCAAAACCATACGAGGTAGAACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

186

Amino Acids

21.17

Weight (kDa)

9.18

Isoelectric Point (pI)

69.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 18 - 146 1.7e-30 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AatII GACGTC 1 cut(s) 126
AccB7I CCANNNNNTGG 2 cut(s) 150, 397
AccBSI CCGCTC 3 cut(s) 190, 240, 438
AccI GTMKAC 2 cut(s) 120, 342
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 2 cut(s) 266, 306
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 4 cut(s) 150, 193, 397, 511
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 3 cut(s) 277, 403, 481
AluI AGCT 3 cut(s) 277, 403, 481
Alw26I GTCTC 2 cut(s) 424, 425
AlwI GGATC 1 cut(s) 161
AoxI GGCC 2 cut(s) 266, 306
ApeKI GCWGC 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 220, 388
AsuHPI GGTGA 2 cut(s) 65, 118
AsuII TTCGAA 1 cut(s) 375
AvaII GGWCC 2 cut(s) 220, 388
BbsI GAAGAC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 264
BccI CCATC 3 cut(s) 78, 152, 307
BceAI ACGGC 3 cut(s) 90, 210, 253
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 424, 425
BisI GCNGC 3 cut(s) 49, 278, 306
BlsI GCNGC 3 cut(s) 50, 279, 307
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 2 cut(s) 220, 388
BmgT120I GGNCC 2 cut(s) 220, 388
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 448
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 80, 110
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 193, 397, 511
Bse1I ACTGG 2 cut(s) 155, 431
BseBI CCWGG 1 cut(s) 137
BseLI CCNNNNNNNGG 4 cut(s) 150, 193, 397, 511
BseNI ACTGG 2 cut(s) 155, 431
BseRI GAGGAG 5 cut(s) 19, 22, 25, 332, 486
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 268, 308
BslFI GGGAC 2 cut(s) 67, 314
BslI CCNNNNNNNGG 4 cut(s) 150, 193, 397, 511
BsmAI GTCTC 2 cut(s) 424, 425
BsmFI GGGAC 2 cut(s) 67, 314
BsnI GGCC 2 cut(s) 268, 308
Bsp119I TTCGAA 1 cut(s) 375
Bsp143I GATC 3 cut(s) 54, 153, 523
BspANI GGCC 2 cut(s) 268, 308
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 375
BsrBI CCGCTC 3 cut(s) 190, 240, 438
BsrI ACTGG 2 cut(s) 155, 431
BssMI GATC 3 cut(s) 54, 153, 523
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 81, 118, 388
Bst6I CTCTTC 2 cut(s) 22, 28
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 558
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 133, 292
BstDEI CTNAG 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 509
BstKTI GATC 3 cut(s) 57, 156, 526
BstMAI GTCTC 2 cut(s) 424, 425
BstMBI GATC 3 cut(s) 54, 153, 523
BstMWI GCNNNNNNNGC 2 cut(s) 111, 274
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSNI TACGTA 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 268, 308
Cac8I GCNNGC 2 cut(s) 133, 292
Cfr13I GGNCC 2 cut(s) 220, 388
CviAII CATG 2 cut(s) 257, 412
CviJI RGCY 8 cut(s) 268, 277, 308, 322, 361, 403, 481, 515
CviKI_1 RGCY 8 cut(s) 268, 277, 308, 322, 361, 403, 481, 515
DdeI CTNAG 1 cut(s) 477
DpnI GATC 3 cut(s) 56, 155, 525
DpnII GATC 3 cut(s) 54, 153, 523
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 266, 306
Eam1104I CTCTTC 2 cut(s) 22, 28
EarI CTCTTC 2 cut(s) 22, 28
EciI GGCGGA 2 cut(s) 28, 35
Eco105I TACGTA 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 220, 388
EcoNI CCTNNNNNAGG 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 260, 415
FaiI YATR 3 cut(s) 258, 413, 542
FaqI GGGAC 2 cut(s) 67, 314
FatI CATG 2 cut(s) 256, 411
FauI CCCGC 5 cut(s) 140, 195, 245, 255, 493
FblI GTMKAC 2 cut(s) 120, 342
Fnu4HI GCNGC 3 cut(s) 49, 278, 306
Fsp4HI GCNGC 3 cut(s) 49, 278, 306
GluI GCNGC 3 cut(s) 49, 278, 306
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 2 cut(s) 268, 308
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 260, 415
HincII GTYRAC 3 cut(s) 121, 211, 343
HindII GTYRAC 3 cut(s) 121, 211, 343
HinfI GANTC 6 cut(s) 59, 65, 140, 225, 366, 432
HphI GGTGA 2 cut(s) 65, 118
Hpy166II GTNNAC 4 cut(s) 121, 166, 211, 343
Hpy188I TCNGA 2 cut(s) 64, 523
Hpy188III TCNNGA 3 cut(s) 157, 500, 509
Hpy8I GTNNAC 4 cut(s) 121, 166, 211, 343
Hpy99I CGWCG 3 cut(s) 122, 125, 344
HpyAV CCTTC 2 cut(s) 460, 515
HpyCH4III ACNGT 3 cut(s) 81, 118, 388
HpyCH4IV ACGT 2 cut(s) 123, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 274
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 2 cut(s) 123, 557
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 260, 415
Kzo9I GATC 3 cut(s) 54, 153, 523
LmnI GCTCC 6 cut(s) 245, 319, 400, 443, 486, 499
LpnPI CCDG 7 cut(s) 65, 122, 136, 149, 412, 430, 512
Lsp1109I GCAGC 1 cut(s) 264
MaeII ACGT 2 cut(s) 123, 557
MaeIII GTNAC 3 cut(s) 107, 124, 442
MalI GATC 3 cut(s) 56, 155, 525
MbiI CCGCTC 3 cut(s) 190, 240, 438
MboI GATC 3 cut(s) 54, 153, 523
MboII GAAGA 6 cut(s) 3, 9, 15, 346, 364, 510
MflI RGATCY 1 cut(s) 153
MlyI GAGTC 4 cut(s) 53, 59, 134, 426
MmeI TCCRAC 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 111, 274
NdeII GATC 3 cut(s) 54, 153, 523
NlaIII CATG 2 cut(s) 260, 415
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 3 cut(s) 107, 124, 442
NspV TTCGAA 1 cut(s) 375
PfeI GAWTC 2 cut(s) 225, 366
PflMI CCANNNNNTGG 2 cut(s) 150, 397
PkrI GCNGC 3 cut(s) 50, 279, 307
PleI GAGTC 4 cut(s) 53, 59, 134, 426
PpsI GAGTC 4 cut(s) 53, 59, 134, 426
Ppu21I YACGTR 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 220, 388
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 277
SalI GTCGAC 2 cut(s) 119, 341
SatI GCNGC 3 cut(s) 49, 278, 306
Sau3AI GATC 3 cut(s) 54, 153, 523
Sau96I GGNCC 2 cut(s) 220, 388
SchI GAGTC 4 cut(s) 53, 59, 134, 426
ScrFI CCNGG 1 cut(s) 137
SfuI TTCGAA 1 cut(s) 375
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 2 cut(s) 220, 388
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SnaBI TACGTA 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 81, 118, 388
TaiI ACGT 2 cut(s) 126, 560
TaqI TCGA 7 cut(s) 57, 120, 342, 357, 375, 453, 501
TaqII GACCGA 1 cut(s) 237
TauI GCSGC 2 cut(s) 51, 308
TfiI GAWTC 2 cut(s) 225, 366
TseFI GTSAC 3 cut(s) 107, 124, 442
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 3 cut(s) 107, 124, 442
TspDTI ATGAA 1 cut(s) 460
TspGWI ACGGA 2 cut(s) 196, 430
Van91I CCANNNNNTGG 2 cut(s) 150, 397
VpaK11BI GGWCC 2 cut(s) 220, 388
XagI CCTNNNNNAGG 1 cut(s) 509
XmiI GTMKAC 2 cut(s) 120, 342
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.