Prupe.8G146700_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013602
Physical Location & Seq
Forward (+)
16205359 .. 16207834
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G146700.1

Sequence Viewer

Length: 1038 bp
ATGCAACCCAGCCATGACCAAACCCACCTCTCCTCTCACCCAATGTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTACGACACCTCCAACTTTGTCGTCTCATCCCATCACTCCCCACCGTCCGATGAAACCGACGACACCGCCACCATCCTCACCCGTCTGATCGACTCCGAGCTCAATCACATGCCCTCCCCAAACTACATCTCCCGCCTCCGCGACCGTTCGATCGACGTCACCGCTCGCCAGGACTCAATCAACTGGATCTTAAAAGTCCACGCCCACTACCGCTTCTCTCCCCTCACCGCCTTCCTCTCCATCAACTACTTCGACCGCTTCCTCTCCTCCCATTCTCTCCCGCAGCACAATGGGTACTGGCCATTTCAGCTGCTGTCTGTGGCTTGCCTGTCTTTAGCGGCGAAGATGGAGGAGCCCAATGTGCCCTTCATTTTGGACCTCCAAATATTCGAACCCAAGTTCGTGTTCGAGCCCAGAACGGTTCAGAGAATGGAGCTCCGGGTCATGACCATTCTCAACTGGAGGCTCCGATCCATCACCCCCTTCGATTTCCTCCACCACTTCATCGCCAACCTCCCCTCGTCTTCTTCCTCCTCTCTCTTCTCAGCTTCCTCCGATCTAATTCTCAGCACCACCCGTGTGATTGATTTCTTGGGTTTTTCGCCTTCCACAATTGCCGCGGCGGCGGTGCTATGCGCCGCCGAAAAAAGTGTCGATTTTGCGGCTGCGGAAGACTCTGATGCGGCGGCGTCGTTGTTCCACGAAAGAGTAAACAAAGAGGGGGCGAGAAGCTGTCACCAACTCATGGAGGAGTATCTGATCGACACGTGTCCCTCGTCCCGCCATAAAGAGCCCGTCGTTGGAACGGCGTCTTCGTCCCCAGCCAGCCCAGTTGGCGTGCTCGACGCGGCTGCCTGTGGAAGTTGCGACACTCGGTCAGAAAATCCCGGCTCCACCGTCGAAGCTGAGCCGCCAGCAAAGCGGCTCCGACCCTCCTCTGCCGCTGATGTACAGCCGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

346

Amino Acids

37.88

Weight (kDa)

5.62

Isoelectric Point (pI)

72.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 239
AccII CGCG 3 cut(s) 216, 695, 923
AclWI GGATC 2 cut(s) 269, 540
AcoI YGGCCR 1 cut(s) 374
AcvI CACGTG 1 cut(s) 843
AcyI GRCGYC 3 cut(s) 231, 764, 884
AfaI GTAC 2 cut(s) 371, 1026
AfiI CCNNNNNNNGG 2 cut(s) 820, 875
AflIII ACRYGT 2 cut(s) 840, 842
AhdI GACNNNNNGTC 1 cut(s) 949
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 4 cut(s) 425, 457, 464, 496
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 6 cut(s) 175, 385, 511, 623, 807, 980
AluI AGCT 6 cut(s) 175, 385, 511, 623, 807, 980
Alw21I GWGCWC 3 cut(s) 177, 513, 918
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 2 cut(s) 269, 540
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 358, 385, 740, 926
ArsI GACNNNNNNTTYG 2 cut(s) 711, 743
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 1 cut(s) 451
AsuC2I CCSGG 2 cut(s) 515, 963
AsuHPI GGTGA 6 cut(s) 29, 145, 226, 292, 544, 803
AsuII TTCGAA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 441
BalI TGGCCA 1 cut(s) 376
BanII GRGCYC 5 cut(s) 177, 432, 489, 513, 870
BbrPI CACGTG 1 cut(s) 843
BbsI GAAGAC 4 cut(s) 39, 591, 753, 879
Bbv12I GWGCWC 3 cut(s) 177, 513, 918
BbvI GCAGC 4 cut(s) 370, 372, 727, 913
BccI CCATC 5 cut(s) 114, 155, 323, 415, 557
BceAI ACGGC 2 cut(s) 897, 1018
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 2 cut(s) 515, 963
BcoDI GTCTC 1 cut(s) 103
BglI GCCNNNNNGGC 2 cut(s) 698, 909
BlpI GCTNAGC 1 cut(s) 981
Bme1390I CCNGG 3 cut(s) 245, 515, 963
Bme18I GGWCC 1 cut(s) 451
BmeRI GACNNNNNGTC 1 cut(s) 949
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 4 cut(s) 429, 542, 967, 1001
BmrFI CCNGG 3 cut(s) 245, 515, 963
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 1 cut(s) 745
BmuI ACTGGG 1 cut(s) 899
BoxI GACNNNNGTC 1 cut(s) 843
BpiI GAAGAC 4 cut(s) 39, 591, 753, 879
BpmI CTGGAG 1 cut(s) 556
Bpu1102I GCTNAGC 1 cut(s) 981
Bpu14I TTCGAA 1 cut(s) 465
BpuMI CCSGG 2 cut(s) 515, 963
BsaAI YACGTR 1 cut(s) 843
BsaHI GRCGYC 3 cut(s) 231, 764, 884
BsaJI CCNNGG 1 cut(s) 693
BsaXI ACNNNNNCTCC 6 cut(s) 68, 98, 173, 188, 203, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 820, 875
Bse1I ACTGG 4 cut(s) 263, 377, 539, 905
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 2 cut(s) 101, 147
BseLI CCNNNNNNNGG 2 cut(s) 820, 875
BseMII CTCAG 3 cut(s) 633, 655, 972
BseNI ACTGG 4 cut(s) 263, 377, 539, 905
BseRI GAGGAG 6 cut(s) 22, 331, 440, 598, 839, 1000
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 4 cut(s) 370, 372, 727, 913
BseYI CCCAGC 2 cut(s) 8, 895
Bsh1236I CGCG 3 cut(s) 216, 695, 923
Bsh1285I CGRYCG 3 cut(s) 220, 228, 331
BshFI GGCC 1 cut(s) 376
BsiEI CGRYCG 3 cut(s) 220, 228, 331
BsiHKAI GWGCWC 3 cut(s) 177, 513, 918
BsiSI CCGG 2 cut(s) 514, 963
BslFI GGGAC 3 cut(s) 831, 838, 877
BslI CCNNNNNNNGG 2 cut(s) 820, 875
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 831, 838, 877
BsnI GGCC 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 7 cut(s) 177, 432, 441, 489, 513, 870, 918
Bsp1407I TGTACA 1 cut(s) 1024
Bsp143I GATC 6 cut(s) 162, 225, 261, 545, 631, 834
Bsp1720I GCTNAGC 1 cut(s) 981
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 3 cut(s) 632, 654, 973
BspFNI CGCG 3 cut(s) 216, 695, 923
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 4 cut(s) 429, 542, 967, 1001
BspPI GGATC 2 cut(s) 269, 540
BspT104I TTCGAA 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 1024
BsrI ACTGG 4 cut(s) 263, 377, 539, 905
BssECI CCNNGG 1 cut(s) 693
BssMI GATC 6 cut(s) 162, 225, 261, 545, 631, 834
BssNI GRCGYC 3 cut(s) 231, 764, 884
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 120, 221, 496, 973
Bst6I CTCTTC 5 cut(s) 58, 64, 70, 76, 620
BstACI GRCGYC 3 cut(s) 231, 764, 884
BstAUI TGTACA 1 cut(s) 1024
BstBAI YACGTR 1 cut(s) 843
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 5 cut(s) 241, 400, 901, 914, 990
BstDEI CTNAG 3 cut(s) 619, 641, 981
BstDSI CCRYGG 1 cut(s) 693
BstF5I GGATG 2 cut(s) 101, 147
BstFNI CGCG 3 cut(s) 216, 695, 923
BstHHI GCGC 1 cut(s) 713
BstKTI GATC 6 cut(s) 165, 228, 264, 548, 634, 837
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 6 cut(s) 162, 225, 261, 545, 631, 834
BstMCI CGRYCG 3 cut(s) 220, 228, 331
BstMWI GCNNNNNNNGC 5 cut(s) 382, 436, 698, 909, 994
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 187
BstPAI GACNNNNGTC 1 cut(s) 843
BstSCI CCNGG 3 cut(s) 243, 513, 961
BstSLI GKGCMC 1 cut(s) 441
BstUI CGCG 3 cut(s) 216, 695, 923
BstV1I GCAGC 4 cut(s) 370, 372, 727, 913
BstV2I GAAGAC 4 cut(s) 39, 591, 753, 879
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 693
BtgZI GCGATG 1 cut(s) 565
BtsCI GGATG 2 cut(s) 101, 147
Cac8I GCNNGC 5 cut(s) 241, 400, 901, 914, 990
CaiI CAGNNNCTG 1 cut(s) 388
CciI TCATGA 1 cut(s) 519
CfoI GCGC 1 cut(s) 713
Cfr13I GGNCC 1 cut(s) 451
Cfr42I CCGCGG 1 cut(s) 696
CseI GACGC 3 cut(s) 753, 873, 929
Csp6I GTAC 2 cut(s) 370, 1025
CviAII CATG 4 cut(s) 14, 184, 520, 820
CviQI GTAC 2 cut(s) 370, 1025
DdeI CTNAG 3 cut(s) 619, 641, 981
DpnI GATC 6 cut(s) 164, 227, 263, 547, 633, 836
DpnII GATC 6 cut(s) 162, 225, 261, 545, 631, 834
DriI GACNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 1 cut(s) 374
Eam1104I CTCTTC 5 cut(s) 58, 64, 70, 76, 620
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 5 cut(s) 58, 64, 70, 76, 620
Ecl136II GAGCTC 2 cut(s) 175, 511
Eco24I GRGCYC 5 cut(s) 177, 432, 489, 513, 870
Eco47I GGWCC 1 cut(s) 451
Eco53kI GAGCTC 2 cut(s) 175, 511
Eco72I CACGTG 1 cut(s) 843
EcoICRI GAGCTC 2 cut(s) 175, 511
EcoRII CCWGG 1 cut(s) 243
EcoT38I GRGCYC 5 cut(s) 177, 432, 489, 513, 870
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 17, 187, 523, 823
FaiI YATR 6 cut(s) 15, 185, 521, 709, 821, 861
FaqI GGGAC 3 cut(s) 831, 838, 877
FatI CATG 4 cut(s) 13, 183, 519, 819
FauI CCCGC 3 cut(s) 215, 363, 863
FokI GGATG 2 cut(s) 88, 134
FriOI GRGCYC 5 cut(s) 177, 432, 489, 513, 870
GlaI GCGC 1 cut(s) 712
GsaI CCCAGC 2 cut(s) 12, 899
GsuI CTGGAG 1 cut(s) 556
HaeIII GGCC 1 cut(s) 376
HapII CCGG 2 cut(s) 514, 963
HgaI GACGC 3 cut(s) 753, 873, 929
HhaI GCGC 1 cut(s) 713
Hin1I GRCGYC 3 cut(s) 231, 764, 884
Hin1II CATG 4 cut(s) 17, 187, 523, 823
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HinfI GANTC 3 cut(s) 167, 248, 749
HpaII CCGG 2 cut(s) 514, 963
HphI GGTGA 6 cut(s) 29, 145, 226, 292, 544, 803
Hpy166II GTNNAC 2 cut(s) 274, 787
Hpy188III TCNNGA 1 cut(s) 520
Hpy8I GTNNAC 2 cut(s) 274, 787
Hpy99I CGWCG 6 cut(s) 137, 233, 769, 875, 923, 977
HpyAV CCTTC 4 cut(s) 316, 451, 568, 690
HpyCH4III ACNGT 4 cut(s) 120, 221, 496, 973
HpyCH4IV ACGT 2 cut(s) 231, 842
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 382, 436, 698, 909, 994
HpyF3I CTNAG 3 cut(s) 619, 641, 981
HpySE526I ACGT 2 cut(s) 231, 842
Hsp92I GRCGYC 3 cut(s) 231, 764, 884
Hsp92II CATG 4 cut(s) 17, 187, 523, 823
HspAI GCGC 1 cut(s) 711
KspI CCGCGG 1 cut(s) 696
Kzo9I GATC 6 cut(s) 162, 225, 261, 545, 631, 834
LmnI GCTCC 6 cut(s) 427, 508, 516, 546, 971, 1005
Lsp1109I GCAGC 4 cut(s) 370, 372, 727, 913
LweI GCATC 1 cut(s) 745
MaeII ACGT 2 cut(s) 231, 842
MaeIII GTNAC 2 cut(s) 232, 809
MalI GATC 6 cut(s) 164, 227, 263, 547, 633, 836
MbiI CCGCTC 1 cut(s) 239
MboI GATC 6 cut(s) 162, 225, 261, 545, 631, 834
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 7 cut(s) 177, 432, 441, 489, 513, 870, 918
MlsI TGGCCA 1 cut(s) 376
MluCI AATT 2 cut(s) 636, 687
MluNI TGGCCA 1 cut(s) 376
MlyI GAGTC 3 cut(s) 161, 242, 743
MmeI TCCRAC 3 cut(s) 111, 856, 1027
Mox20I TGGCCA 1 cut(s) 376
MscI TGGCCA 1 cut(s) 376
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 653
Msp20I TGGCCA 1 cut(s) 376
MspA1I CMGCKG 3 cut(s) 385, 695, 1019
MspI CCGG 2 cut(s) 514, 963
MspR9I CCNGG 3 cut(s) 245, 515, 963
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 3 cut(s) 216, 695, 923
MwoI GCNNNNNNNGC 5 cut(s) 382, 436, 698, 909, 994
NciI CCSGG 2 cut(s) 515, 963
NdeII GATC 6 cut(s) 162, 225, 261, 545, 631, 834
NlaIII CATG 4 cut(s) 17, 187, 523, 823
NlaIV GGNNCC 4 cut(s) 429, 542, 967, 1001
NmuCI GTSAC 2 cut(s) 232, 809
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 653
PagI TCATGA 1 cut(s) 519
PcsI WCGNNNNNNNCGW 2 cut(s) 848, 887
PflMI CCANNNNNTGG 1 cut(s) 820
Ple19I CGATCG 1 cut(s) 228
PleI GAGTC 3 cut(s) 161, 242, 743
PmaCI CACGTG 1 cut(s) 843
PmlI CACGTG 1 cut(s) 843
PpsI GAGTC 3 cut(s) 161, 242, 743
Ppu21I YACGTR 1 cut(s) 843
PshAI GACNNNNGTC 1 cut(s) 843
Psp124BI GAGCTC 2 cut(s) 177, 513
Psp6I CCWGG 1 cut(s) 243
PspCI CACGTG 1 cut(s) 843
PspFI CCCAGC 2 cut(s) 8, 895
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 4 cut(s) 429, 542, 967, 1001
PspPI GGNCC 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 261
PvuI CGATCG 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 2 cut(s) 371, 1026
RsaNI GTAC 2 cut(s) 370, 1025
RseI CAYNNNNRTG 1 cut(s) 653
SacI GAGCTC 2 cut(s) 177, 513
SacII CCGCGG 1 cut(s) 696
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 6 cut(s) 162, 225, 261, 545, 631, 834
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 3 cut(s) 161, 242, 743
ScrFI CCNGG 3 cut(s) 245, 515, 963
SduI GDGCHC 7 cut(s) 177, 432, 441, 489, 513, 870, 918
SfaNI GCATC 1 cut(s) 745
Sfr303I CCGCGG 1 cut(s) 696
SfuI TTCGAA 1 cut(s) 465
SgrBI CCGCGG 1 cut(s) 696
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 653
Sse9I AATT 2 cut(s) 636, 687
SspI AATATT 1 cut(s) 462
SstI GAGCTC 2 cut(s) 177, 513
StyD4I CCNGG 3 cut(s) 243, 513, 961
TaaI ACNGT 4 cut(s) 120, 221, 496, 973
TaiI ACGT 2 cut(s) 234, 845
TaqII GACCGA 1 cut(s) 939
TasI AATT 2 cut(s) 636, 687
TatI WGTACW 1 cut(s) 1024
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseFI GTSAC 2 cut(s) 232, 809
TseI GCWGC 4 cut(s) 358, 385, 740, 926
Tsp45I GTSAC 2 cut(s) 232, 809
TspDTI ATGAA 3 cut(s) 141, 433, 568
Van91I CCANNNNNTGG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 451
XceI RCATGY 1 cut(s) 187
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.