Rh6DG041900

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013602
Physical Location & Seq
Reverse (-)
4486091 .. 4486971
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG041900.1

Sequence Viewer

Length: 699 bp
ATGTCTTCCTCCTCCTCCTCCTCCTCCGCCCTCCGCCGCCTGATCGACTCCGACTCCCATCACCTCCCCTCCCCTAACTACCTCTCCCTCTGCCGTGACCGCACCGTCGACGTCACCGCTCGTCAGGACTCCATCAACTGGATCTTGAAAGTCCACGCCCACTACCGCTTTGCTCCGCTCACGGCGTTCCTCTCCGTCAACTACTTCGACCGTTTCCTCTCCACCCGCTCCCTCCCGCAACAGCATGGGCGGTGGCCGTTTCAGCTGCTCTCGGTGGCGTGCTTGTCTTTAGCGGCCAAGATGGAGGAGCCTAATGTCCCCTACATCGTCGACCTCCAAATCTTCGAGCCAAGATTCGTCTTCGAACCCAAAACGGTCCAAAGAATGGAGCTTTGTGTCATGTCCAGTCTCAACTGGAGACTCCGCTCCGTCACACCCTTCGATTTCCTCCCCCATTTCATCTCTAAGCTCCCCGCTTCTTCTCCTCTCGACCTTTTAGAGGCTTCTTCTGATCTAGTTCTCAAAACCATACGAGTGATTGATTTCTTGGGTTTTTCACCTTCGGCGGTGGCGGCGGCGGCTGTGCTCTGCGCCGCCGGCGTAAGCGTCGAGTCTGCGGCGGCGGAAGACCAAGCAGGAGCGGTGTTTGACGAAAGAGTAAACAAAGTAATAATCCATGGGTCTACGAGCAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

232

Amino Acids

25.77

Weight (kDa)

6.65

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 14 - 142 5.8e-30 Cyclin, N-terminal domain
Cyclin_C PF02984 144 - 199 2.2e-06 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 114
AccB7I CCANNNNNTGG 2 cut(s) 138, 385
AccBSI CCGCTC 5 cut(s) 119, 178, 228, 426, 641
AccI GTMKAC 3 cut(s) 108, 330, 683
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 2 cut(s) 254, 294
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 138, 385, 499
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 3 cut(s) 265, 391, 469
AluI AGCT 3 cut(s) 265, 391, 469
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 412, 413
AlwI GGATC 1 cut(s) 149
AoxI GGCC 2 cut(s) 254, 294
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 53, 106, 549
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 352, 633
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 252
BccI CCATC 3 cut(s) 66, 140, 295
BceAI ACGGC 3 cut(s) 78, 198, 241
BcoDI GTCTC 2 cut(s) 412, 413
BfaI CTAG 1 cut(s) 515
BisI GCNGC 9 cut(s) 37, 266, 294, 573, 576, 579, 594, 618, 621
BlsI GCNGC 9 cut(s) 38, 267, 295, 574, 577, 580, 595, 619, 622
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 309
BpiI GAAGAC 2 cut(s) 352, 633
BpmI CTGGAG 1 cut(s) 436
Bpu14I TTCGAA 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 676
BsaXI ACNNNNNCTCC 6 cut(s) 38, 53, 68, 68, 83, 98
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 385, 499
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 3 cut(s) 143, 405, 419
BseDI CCNNGG 1 cut(s) 676
BseLI CCNNNNNNNGG 3 cut(s) 138, 385, 499
BseNI ACTGG 3 cut(s) 143, 405, 419
BseRI GAGGAG 6 cut(s) 4, 7, 10, 13, 320, 474
BseXI GCAGC 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 256, 296
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 138, 385, 499
BsmAI GTCTC 2 cut(s) 412, 413
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 256, 296
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 3 cut(s) 42, 141, 511
Bsp19I CCATGG 1 cut(s) 676
BspANI GGCC 2 cut(s) 256, 296
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 363
BsrBI CCGCTC 5 cut(s) 119, 178, 228, 426, 641
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 3 cut(s) 143, 405, 419
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 3 cut(s) 42, 141, 511
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 676
Bst4CI ACNGT 3 cut(s) 106, 212, 376
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 280, 598
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 676
BstENI CCTNNNNNAGG 1 cut(s) 497
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 3 cut(s) 45, 144, 514
BstMAI GTCTC 2 cut(s) 412, 413
BstMBI GATC 3 cut(s) 42, 141, 511
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 5 cut(s) 99, 262, 572, 578, 597
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 2 cut(s) 352, 633
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 2 cut(s) 256, 296
BtgI CCRYGG 1 cut(s) 676
Cac8I GCNNGC 2 cut(s) 280, 598
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 595
CviAII CATG 3 cut(s) 245, 400, 677
CviJI RGCY 9 cut(s) 256, 265, 296, 310, 349, 391, 469, 503, 581
CviKI_1 RGCY 9 cut(s) 256, 265, 296, 310, 349, 391, 469, 503, 581
DdeI CTNAG 1 cut(s) 465
DpnI GATC 3 cut(s) 44, 143, 513
DpnII GATC 3 cut(s) 42, 141, 511
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 254, 294
EciI GGCGGA 3 cut(s) 16, 23, 638
Eco130I CCWWGG 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 376
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 3 cut(s) 248, 403, 680
FaiI YATR 4 cut(s) 246, 401, 530, 678
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 244, 399, 676
FauI CCCGC 3 cut(s) 233, 243, 481
FblI GTMKAC 3 cut(s) 108, 330, 683
Fnu4HI GCNGC 9 cut(s) 37, 266, 294, 573, 576, 579, 594, 618, 621
Fsp4HI GCNGC 9 cut(s) 37, 266, 294, 573, 576, 579, 594, 618, 621
FspBI CTAG 1 cut(s) 515
GlaI GCGC 1 cut(s) 592
GluI GCNGC 9 cut(s) 37, 266, 294, 573, 576, 579, 594, 618, 621
GsuI CTGGAG 1 cut(s) 436
HaeIII GGCC 2 cut(s) 256, 296
HapII CCGG 1 cut(s) 597
HgaI GACGC 1 cut(s) 595
HhaI GCGC 1 cut(s) 593
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 3 cut(s) 248, 403, 680
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HincII GTYRAC 3 cut(s) 109, 199, 331
HindII GTYRAC 3 cut(s) 109, 199, 331
HinfI GANTC 6 cut(s) 47, 53, 128, 354, 420, 611
HpaII CCGG 1 cut(s) 597
HphI GGTGA 3 cut(s) 53, 106, 549
Hpy166II GTNNAC 6 cut(s) 109, 154, 199, 331, 661, 684
Hpy188I TCNGA 2 cut(s) 52, 511
Hpy188III TCNNGA 3 cut(s) 125, 145, 488
Hpy8I GTNNAC 6 cut(s) 109, 154, 199, 331, 661, 684
Hpy99I CGWCG 4 cut(s) 110, 113, 332, 611
HpyAV CCTTC 2 cut(s) 448, 570
HpyCH4III ACNGT 3 cut(s) 106, 212, 376
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 262, 572, 578, 597
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 3 cut(s) 248, 403, 680
HspAI GCGC 1 cut(s) 591
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Kzo9I GATC 3 cut(s) 42, 141, 511
LmnI GCTCC 7 cut(s) 178, 233, 307, 388, 431, 474, 638
LpnPI CCDG 7 cut(s) 53, 110, 124, 400, 418, 610, 621
Lsp1109I GCAGC 1 cut(s) 252
MaeI CTAG 1 cut(s) 515
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 3 cut(s) 95, 112, 430
MalI GATC 3 cut(s) 44, 143, 513
MbiI CCGCTC 5 cut(s) 119, 178, 228, 426, 641
MboI GATC 3 cut(s) 42, 141, 511
MboII GAAGA 5 cut(s) 334, 352, 471, 498, 638
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 1 cut(s) 691
MlyI GAGTC 5 cut(s) 41, 47, 122, 414, 620
MmeI TCCRAC 1 cut(s) 75
MreI CGCCGGCG 1 cut(s) 596
MroNI GCCGGC 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 1 cut(s) 597
MwoI GCNNNNNNNGC 5 cut(s) 99, 262, 572, 578, 597
NaeI GCCGGC 1 cut(s) 598
NcoI CCATGG 1 cut(s) 676
NdeII GATC 3 cut(s) 42, 141, 511
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 3 cut(s) 248, 403, 680
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 3 cut(s) 95, 112, 430
NspV TTCGAA 1 cut(s) 363
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 1 cut(s) 354
PflMI CCANNNNNTGG 2 cut(s) 138, 385
PkrI GCNGC 9 cut(s) 38, 267, 295, 574, 577, 580, 595, 619, 622
PleI GAGTC 5 cut(s) 41, 47, 122, 414, 619
PpsI GAGTC 5 cut(s) 41, 47, 122, 414, 619
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 533
SalI GTCGAC 2 cut(s) 107, 329
SatI GCNGC 9 cut(s) 37, 266, 294, 573, 576, 579, 594, 618, 621
Sau3AI GATC 3 cut(s) 42, 141, 511
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 5 cut(s) 41, 47, 122, 414, 620
SduI GDGCHC 1 cut(s) 588
SetI ASST 9 cut(s) 66, 84, 114, 267, 336, 393, 471, 495, 562
SfuI TTCGAA 1 cut(s) 363
SgrAI CRCCGGYG 1 cut(s) 596
SgrDI CGTCGACG 1 cut(s) 107
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 533
Sse9I AATT 1 cut(s) 691
SspMI CTAG 1 cut(s) 515
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 106, 212, 376
TaiI ACGT 1 cut(s) 114
TaqI TCGA 9 cut(s) 45, 108, 207, 330, 345, 363, 441, 489, 609
TasI AATT 1 cut(s) 691
TauI GCSGC 8 cut(s) 39, 296, 575, 578, 581, 596, 620, 623
TfiI GAWTC 1 cut(s) 354
TseFI GTSAC 3 cut(s) 95, 112, 430
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 3 cut(s) 95, 112, 430
TspDTI ATGAA 1 cut(s) 448
TspGWI ACGGA 2 cut(s) 184, 418
Van91I CCANNNNNTGG 2 cut(s) 138, 385
VpaK11BI GGWCC 1 cut(s) 376
XagI CCTNNNNNAGG 1 cut(s) 497
XmiI GTMKAC 3 cut(s) 108, 330, 683
XspI CTAG 1 cut(s) 515
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.