Rroxscaffold_7G00212510

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013602
Physical Location & Seq
Forward (+)
62983784 .. 62985391
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212510.1

Sequence Viewer

Length: 924 bp
ATGTCTTCTCCTTCCTCCTCCTCCTCCTCGTCCGCCCTCGGCCGCCTGATCGACTCCGACTCCCATCACCTCCCGTCCCCTAACTACCTCTCGCTCTGCCGTGACCGCACCGTCGACGTCACCGCCCGTCAGGACTCCATCAACTGGATCTTGAAAGTCCACGCCCACTACCGCTTTGCTCCGCTCACGGCGTTCCTCTCCGTCAACTACTTCGACCGTTTCCTCTCCACCCGCTCCCTCCCGCCACAGCATGGACGGTGGCCGTTTCAGCTGCTCTCGGTGGCGTGCTTGTCTTTAGCGGCCAAGATGGAGGAGCCTAATGTCCCCTACATCGTCGACCTCCAAATCTTCGAGCCAAGATTTGTCTTCGAACCCAAAACGGTCCAAAGAATGGAGCTTTTGGTCATGTCCAGTCTCAACTGGAGACTCCGCTCGGTTACACCCTTCGATTTCCTCCCCCATTTCATCTCTAAGCTCCCGCTTCTTCCCCTCTCGACCTTCTTCAGGCTTCTTCTGATCTGGTTCTCAAAACCATACGAGGTAGAAATACGTATGATTGATTTCTTGGGTTTTTCACCGTCGACGGTGGCGGCTGCGGCTGTGCTCTGCGCCGCTGGCGTAAGCGTCGAGTCTGCGGCGGCGGAAGACCAAGCAGGAGCGGTGTTTGACGAAAGAGAAAGTGTGAGAAGCTGTCACCAACTCATGGAGGAGTACCTGATCGACACGTGTCCCTCATCCTGCCGCCATAAAGCTGGTAGCTCAGCCCCGCCTCCATCCGCTCCCGCCAGCCCCGTCGGTGTGCTCGACGCGGCGGCTTGCAAGAGTTGCGACACCCGCTCCGAGAATCCCGGGGCCTTAATCCAAGCGGAGCCGCCCCCCAAACGTCCCCGAGTTTCTCCTCCGGAAAATGTACAATCTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

307

Amino Acids

33.93

Weight (kDa)

6.45

Isoelectric Point (pI)

73.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 18 - 144 1e-29 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 120
AccB7I CCANNNNNTGG 4 cut(s) 144, 251, 391, 703
AccBSI CCGCTC 6 cut(s) 184, 234, 432, 659, 779, 837
AccI GTMKAC 3 cut(s) 114, 336, 581
AccII CGCG 1 cut(s) 809
AccIII TCCGGA 1 cut(s) 901
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 3 cut(s) 40, 260, 300
AcuI CTGAAG 1 cut(s) 487
AcvI CACGTG 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 2 cut(s) 713, 912
AfiI CCNNNNNNNGG 5 cut(s) 144, 251, 391, 504, 703
AflIII ACRYGT 2 cut(s) 723, 725
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 6 cut(s) 271, 397, 475, 690, 752, 759
AluI AGCT 6 cut(s) 271, 397, 475, 690, 752, 759
Alw21I GWGCWC 2 cut(s) 606, 804
Alw26I GTCTC 2 cut(s) 418, 419
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 2 cut(s) 848, 888
Aor13HI TCCGGA 1 cut(s) 901
AoxI GGCC 4 cut(s) 40, 260, 300, 852
ApeKI GCWGC 2 cut(s) 271, 593
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 2 cut(s) 382, 852
AsuC2I CCSGG 2 cut(s) 849, 850
AsuHPI GGTGA 4 cut(s) 59, 112, 567, 686
AsuII TTCGAA 1 cut(s) 369
AvaI CYCGRG 2 cut(s) 848, 888
AvaII GGWCC 1 cut(s) 382
BbrPI CACGTG 1 cut(s) 726
BbsI GAAGAC 2 cut(s) 358, 651
Bbv12I GWGCWC 2 cut(s) 606, 804
BbvI GCAGC 2 cut(s) 258, 580
BccI CCATC 4 cut(s) 72, 146, 301, 781
BceAI ACGGC 3 cut(s) 84, 204, 247
BcnI CCSGG 2 cut(s) 849, 850
BcoDI GTCTC 2 cut(s) 418, 419
BlpI GCTNAGC 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 849, 850
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 2 cut(s) 848, 888
BmgT120I GGNCC 2 cut(s) 382, 852
BmiI GGNNCC 3 cut(s) 315, 853, 870
BmrFI CCNGG 2 cut(s) 849, 850
BoxI GACNNNNGTC 1 cut(s) 726
BpiI GAAGAC 2 cut(s) 358, 651
BpmI CTGGAG 1 cut(s) 442
Bpu1102I GCTNAGC 1 cut(s) 760
Bpu14I TTCGAA 1 cut(s) 369
BpuMI CCSGG 2 cut(s) 849, 850
BsaAI YACGTR 2 cut(s) 551, 726
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 37, 848, 849
BsaWI WCCGGW 1 cut(s) 901
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 821, 851
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 251, 391, 504, 703
Bse1I ACTGG 3 cut(s) 149, 411, 425
BseAI TCCGGA 1 cut(s) 901
BseDI CCNNGG 3 cut(s) 37, 848, 849
BseGI GGATG 2 cut(s) 734, 773
BseLI CCNNNNNNNGG 5 cut(s) 144, 251, 391, 504, 703
BseMII CTCAG 1 cut(s) 774
BseNI ACTGG 3 cut(s) 149, 411, 425
BseRI GAGGAG 7 cut(s) 7, 10, 13, 16, 326, 722, 888
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 258, 580
Bsh1236I CGCG 1 cut(s) 809
Bsh1285I CGRYCG 2 cut(s) 43, 217
BshFI GGCC 4 cut(s) 42, 262, 302, 854
BsiEI CGRYCG 2 cut(s) 43, 217
BsiHKAI GWGCWC 2 cut(s) 606, 804
BsiHKCI CYCGRG 2 cut(s) 848, 888
BsiSI CCGG 2 cut(s) 849, 902
BslFI GGGAC 4 cut(s) 61, 308, 714, 870
BslI CCNNNNNNNGG 5 cut(s) 144, 251, 391, 504, 703
BsmAI GTCTC 2 cut(s) 418, 419
BsmFI GGGAC 4 cut(s) 61, 308, 714, 870
BsnI GGCC 4 cut(s) 42, 262, 302, 854
BsoBI CYCGRG 2 cut(s) 848, 888
Bsp119I TTCGAA 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 606, 804
Bsp13I TCCGGA 1 cut(s) 901
Bsp1407I TGTACA 1 cut(s) 910
Bsp143I GATC 4 cut(s) 48, 147, 516, 717
Bsp1720I GCTNAGC 1 cut(s) 760
BspANI GGCC 4 cut(s) 42, 262, 302, 854
BspCNI CTCAG 1 cut(s) 773
BspEI TCCGGA 1 cut(s) 901
BspFNI CGCG 1 cut(s) 809
BspLI GGNNCC 3 cut(s) 315, 853, 870
BspPI GGATC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 369
BsrBI CCGCTC 6 cut(s) 184, 234, 432, 659, 779, 837
BsrGI TGTACA 1 cut(s) 910
BsrI ACTGG 3 cut(s) 149, 411, 425
BssECI CCNNGG 3 cut(s) 37, 848, 849
BssMI GATC 4 cut(s) 48, 147, 516, 717
BssNI GRCGYC 1 cut(s) 117
Bst4CI ACNGT 6 cut(s) 112, 218, 258, 382, 579, 586
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 825
BstAUI TGTACA 1 cut(s) 910
BstBAI YACGTR 2 cut(s) 551, 726
BstBI TTCGAA 1 cut(s) 369
BstC8I GCNNGC 4 cut(s) 286, 616, 787, 817
BstDEI CTNAG 2 cut(s) 471, 760
BstENI CCTNNNNNAGG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 734, 773
BstFNI CGCG 1 cut(s) 809
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 4 cut(s) 51, 150, 519, 720
BstMAI GTCTC 2 cut(s) 418, 419
BstMBI GATC 4 cut(s) 48, 147, 516, 717
BstMCI CGRYCG 2 cut(s) 43, 217
BstMWI GCNNNNNNNGC 6 cut(s) 105, 268, 596, 615, 825, 834
BstPAI GACNNNNGTC 1 cut(s) 726
BstSCI CCNGG 2 cut(s) 847, 848
BstSNI TACGTA 1 cut(s) 551
BstUI CGCG 1 cut(s) 809
BstV1I GCAGC 2 cut(s) 258, 580
BstV2I GAAGAC 2 cut(s) 358, 651
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 752
BstYI RGATCY 1 cut(s) 147
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 4 cut(s) 42, 262, 302, 854
BtsCI GGATG 2 cut(s) 734, 773
Cac8I GCNNGC 4 cut(s) 286, 616, 787, 817
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 2 cut(s) 382, 852
Cfr9I CCCGGG 1 cut(s) 848
CseI GACGC 2 cut(s) 613, 815
Csp6I GTAC 2 cut(s) 712, 911
CviAII CATG 3 cut(s) 251, 406, 703
CviQI GTAC 2 cut(s) 712, 911
DdeI CTNAG 2 cut(s) 471, 760
DpnI GATC 4 cut(s) 50, 149, 518, 719
DpnII GATC 4 cut(s) 48, 147, 516, 717
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 3 cut(s) 40, 260, 300
EagI CGGCCG 1 cut(s) 40
EciI GGCGGA 2 cut(s) 22, 656
EclXI CGGCCG 1 cut(s) 40
Eco105I TACGTA 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 382
Eco52I CGGCCG 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 487
Eco72I CACGTG 1 cut(s) 726
Eco88I CYCGRG 2 cut(s) 848, 888
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 852
FaeI CATG 3 cut(s) 254, 409, 706
FaiI YATR 6 cut(s) 252, 407, 535, 554, 704, 747
FaqI GGGAC 4 cut(s) 61, 308, 714, 870
FatI CATG 3 cut(s) 250, 405, 702
FauI CCCGC 6 cut(s) 239, 249, 486, 774, 790, 842
FblI GTMKAC 3 cut(s) 114, 336, 581
FokI GGATG 2 cut(s) 721, 760
GlaI GCGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 4 cut(s) 42, 262, 302, 854
HapII CCGG 2 cut(s) 849, 902
HgaI GACGC 2 cut(s) 613, 815
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 254, 409, 706
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 4 cut(s) 115, 205, 337, 582
HindII GTYRAC 4 cut(s) 115, 205, 337, 582
HinfI GANTC 6 cut(s) 53, 59, 134, 426, 629, 844
HpaII CCGG 2 cut(s) 849, 902
HphI GGTGA 4 cut(s) 59, 112, 567, 686
Hpy166II GTNNAC 5 cut(s) 115, 160, 205, 337, 582
Hpy188I TCNGA 3 cut(s) 58, 516, 841
Hpy188III TCNNGA 4 cut(s) 131, 151, 493, 902
Hpy8I GTNNAC 5 cut(s) 115, 160, 205, 337, 582
Hpy99I CGWCG 8 cut(s) 116, 119, 338, 583, 586, 629, 797, 809
HpyAV CCTTC 3 cut(s) 21, 454, 508
HpyCH4III ACNGT 6 cut(s) 112, 218, 258, 382, 579, 586
HpyCH4IV ACGT 4 cut(s) 117, 550, 725, 883
HpyCH4V TGCA 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 268, 596, 615, 825, 834
HpyF3I CTNAG 2 cut(s) 471, 760
HpySE526I ACGT 4 cut(s) 117, 550, 725, 883
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 254, 409, 706
HspAI GCGC 1 cut(s) 609
Kpn2I TCCGGA 1 cut(s) 901
Kzo9I GATC 4 cut(s) 48, 147, 516, 717
LmnI GCTCC 9 cut(s) 184, 239, 313, 394, 480, 656, 784, 842, 868
Lsp1109I GCAGC 2 cut(s) 258, 580
MaeII ACGT 4 cut(s) 117, 550, 725, 883
MaeIII GTNAC 4 cut(s) 101, 118, 436, 692
MalI GATC 4 cut(s) 50, 149, 518, 719
MbiI CCGCTC 6 cut(s) 184, 234, 432, 659, 779, 837
MboI GATC 4 cut(s) 48, 147, 516, 717
MboII GAAGA 6 cut(s) 340, 358, 476, 493, 503, 656
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 2 cut(s) 606, 804
MlyI GAGTC 5 cut(s) 47, 53, 128, 420, 638
MmeI TCCRAC 1 cut(s) 81
MroI TCCGGA 1 cut(s) 901
MseI TTAA 1 cut(s) 857
MspA1I CMGCKG 2 cut(s) 271, 614
MspI CCGG 2 cut(s) 849, 902
MspR9I CCNGG 2 cut(s) 849, 850
MvnI CGCG 1 cut(s) 809
MwoI GCNNNNNNNGC 6 cut(s) 105, 268, 596, 615, 825, 834
NciI CCSGG 2 cut(s) 849, 850
NdeII GATC 4 cut(s) 48, 147, 516, 717
NlaIII CATG 3 cut(s) 254, 409, 706
NlaIV GGNNCC 3 cut(s) 315, 853, 870
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 3 cut(s) 101, 118, 692
NspV TTCGAA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PfeI GAWTC 1 cut(s) 844
PflMI CCANNNNNTGG 4 cut(s) 144, 251, 391, 703
PleI GAGTC 5 cut(s) 47, 53, 128, 420, 637
PmaCI CACGTG 1 cut(s) 726
PmlI CACGTG 1 cut(s) 726
PpsI GAGTC 5 cut(s) 47, 53, 128, 420, 637
Ppu21I YACGTR 2 cut(s) 551, 726
PshAI GACNNNNGTC 1 cut(s) 726
PspCI CACGTG 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 315, 853, 870
PspPI GGNCC 2 cut(s) 382, 852
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 713, 912
RsaNI GTAC 2 cut(s) 712, 911
SalI GTCGAC 3 cut(s) 113, 335, 580
SaqAI TTAA 1 cut(s) 857
Sau3AI GATC 4 cut(s) 48, 147, 516, 717
Sau96I GGNCC 2 cut(s) 382, 852
SchI GAGTC 5 cut(s) 47, 53, 128, 420, 638
ScrFI CCNGG 2 cut(s) 849, 850
SduI GDGCHC 2 cut(s) 606, 804
SfuI TTCGAA 1 cut(s) 369
SgrDI CGTCGACG 2 cut(s) 113, 580
SinI GGWCC 1 cut(s) 382
SmaI CCCGGG 1 cut(s) 850
SnaBI TACGTA 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 847, 848
TaaI ACNGT 6 cut(s) 112, 218, 258, 382, 579, 586
TaiI ACGT 4 cut(s) 120, 553, 728, 886
TatI WGTACW 1 cut(s) 910
TfiI GAWTC 1 cut(s) 844
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TseFI GTSAC 3 cut(s) 101, 118, 692
TseI GCWGC 2 cut(s) 271, 593
Tsp45I GTSAC 3 cut(s) 101, 118, 692
TspDTI ATGAA 1 cut(s) 454
TspGWI ACGGA 2 cut(s) 190, 909
TspMI CCCGGG 1 cut(s) 848
Van91I CCANNNNNTGG 4 cut(s) 144, 251, 391, 703
VpaK11BI GGWCC 1 cut(s) 382
XagI CCTNNNNNAGG 1 cut(s) 502
XmaI CCCGGG 1 cut(s) 848
XmiI GTMKAC 3 cut(s) 114, 336, 581
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.