Rmu_sc0004969.1_g000001

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004969.1
OG0013602
Physical Location & Seq
Reverse (-)
973 .. 2257
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004969.1_g000001.1.cds

Sequence Viewer

Length: 906 bp
atgtcttcttcctcctcctcctccgccctccgccgcctgatcgactccgactcccatcacctcccgtcccctaactacctctccctctgccgtgaccgcaccgtcgacgtcaccgcccgccaggactccatcaactggatcttgaaagtccactcccactaccgctttgccccgctcacggcgttcctctccgtcaactacttggaccgattcctctccacccgctccctcccgcaacagcatgggcggtggccgtttcagctgctctcagtggcgtgcttgtctttagcggccaagatggaggagcctaatgtcccctacatcgtcgacctccaaatcttcgagccaagattcgtcttcgaacccaaaacggtccaaagaatggagcttttggtcatgtccagtctcaactggagactccgctccgtcacacccttcgatttcctcccccatttcatctctaagctccccgcttcttcccctctcgaccttcttgaggcttcttctgatctggttctcaaaaccatacgagtgattgatttcttgggttttccaccgtcgacggtggcggcggcggctgtgctctgcgccgctggcgtaagcgtcgaggctgcggcggcggaagacctagcaggagcggtgtttgacgaaagagaaagtgtgagaagctgtcaccaactcatgggagagtacctgatcgacacgtgtctgtcatcctcccgccataaagctggtagctcagccccgcctccgtccgcgcccgccagccccgtcggcgtgctcgacgcggccgcttgcaagagttgcgacacccgctccgagaatcccggggccttaatccaagcggagccgccccccaaacgtccccgaatttctcctccggaaaatgtacaatctgatccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

301

Amino Acids

32.92

Weight (kDa)

6.24

Isoelectric Point (pI)

72.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 3 cut(s) 135, 382, 682
AccBSI CCGCTC 5 cut(s) 175, 225, 423, 638, 816
AccI GTMKAC 3 cut(s) 105, 327, 560
AccII CGCG 2 cut(s) 758, 788
AccIII TCCGGA 1 cut(s) 880
AclWI GGATC 2 cut(s) 146, 893
AcoI YGGCCR 3 cut(s) 251, 291, 789
AcsI RAATTY 1 cut(s) 870
AcvI CACGTG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 692, 891
AfiI CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 682
AflIII ACRYGT 2 cut(s) 702, 704
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 6 cut(s) 262, 388, 466, 669, 731, 738
AluI AGCT 6 cut(s) 262, 388, 466, 669, 731, 738
Alw21I GWGCWC 2 cut(s) 585, 783
Alw26I GTCTC 2 cut(s) 409, 410
AlwI GGATC 2 cut(s) 146, 893
Ama87I CYCGRG 1 cut(s) 827
Aor13HI TCCGGA 1 cut(s) 880
AoxI GGCC 4 cut(s) 251, 291, 789, 831
ApeKI GCWGC 2 cut(s) 262, 611
ApoI RAATTY 1 cut(s) 870
AspLEI GCGC 2 cut(s) 590, 760
AspS9I GGNCC 3 cut(s) 205, 373, 831
AsuC2I CCSGG 2 cut(s) 828, 829
AsuHPI GGTGA 3 cut(s) 50, 103, 665
AsuII TTCGAA 1 cut(s) 360
AvaI CYCGRG 1 cut(s) 827
AvaII GGWCC 2 cut(s) 205, 373
BbrPI CACGTG 1 cut(s) 705
BbsI GAAGAC 2 cut(s) 349, 630
Bbv12I GWGCWC 2 cut(s) 585, 783
BbvI GCAGC 2 cut(s) 249, 598
BccI CCATC 3 cut(s) 63, 137, 292
BceAI ACGGC 3 cut(s) 75, 195, 238
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 2 cut(s) 828, 829
BcoDI GTCTC 2 cut(s) 409, 410
BfaI CTAG 1 cut(s) 629
BglI GCCNNNNNGGC 1 cut(s) 774
BlpI GCTNAGC 1 cut(s) 739
Bme1390I CCNGG 3 cut(s) 122, 828, 829
Bme18I GGWCC 2 cut(s) 205, 373
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 3 cut(s) 205, 373, 831
BmiI GGNNCC 3 cut(s) 306, 832, 849
BmrFI CCNGG 3 cut(s) 122, 828, 829
BoxI GACNNNNGTC 1 cut(s) 705
BpiI GAAGAC 2 cut(s) 349, 630
BpmI CTGGAG 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 739
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 828, 829
BsaAI YACGTR 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 827, 828
BsaWI WCCGGW 1 cut(s) 880
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 65, 95, 800, 830
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 682
Bse1I ACTGG 3 cut(s) 140, 402, 416
BseAI TCCGGA 1 cut(s) 880
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 827, 828
BseGI GGATG 1 cut(s) 713
BseLI CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 682
BseMII CTCAG 2 cut(s) 282, 753
BseNI ACTGG 3 cut(s) 140, 402, 416
BseRI GAGGAG 5 cut(s) 4, 7, 10, 317, 867
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 2 cut(s) 249, 598
Bsh1236I CGCG 2 cut(s) 758, 788
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 4 cut(s) 253, 293, 791, 833
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 2 cut(s) 585, 783
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 2 cut(s) 828, 881
BslFI GGGAC 3 cut(s) 52, 299, 849
BslI CCNNNNNNNGG 5 cut(s) 135, 178, 382, 496, 682
BsmAI GTCTC 2 cut(s) 409, 410
BsmFI GGGAC 3 cut(s) 52, 299, 849
BsnI GGCC 4 cut(s) 253, 293, 791, 833
BsoBI CYCGRG 1 cut(s) 827
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 585, 783
Bsp13I TCCGGA 1 cut(s) 880
Bsp1407I TGTACA 1 cut(s) 889
Bsp143I GATC 5 cut(s) 39, 138, 508, 696, 898
Bsp1720I GCTNAGC 1 cut(s) 739
BspANI GGCC 4 cut(s) 253, 293, 791, 833
BspCNI CTCAG 2 cut(s) 281, 752
BspEI TCCGGA 1 cut(s) 880
BspFNI CGCG 2 cut(s) 758, 788
BspLI GGNNCC 3 cut(s) 306, 832, 849
BspPI GGATC 2 cut(s) 146, 893
BspT104I TTCGAA 1 cut(s) 360
BsrBI CCGCTC 5 cut(s) 175, 225, 423, 638, 816
BsrGI TGTACA 1 cut(s) 889
BsrI ACTGG 3 cut(s) 140, 402, 416
BssECI CCNNGG 2 cut(s) 827, 828
BssMI GATC 5 cut(s) 39, 138, 508, 696, 898
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 4 cut(s) 103, 373, 558, 565
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 804
BstAUI TGTACA 1 cut(s) 889
BstBAI YACGTR 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 7 cut(s) 118, 277, 595, 762, 766, 779, 796
BstDEI CTNAG 3 cut(s) 268, 462, 739
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 713
BstFNI CGCG 2 cut(s) 758, 788
BstHHI GCGC 2 cut(s) 590, 760
BstKTI GATC 5 cut(s) 42, 141, 511, 699, 901
BstMAI GTCTC 2 cut(s) 409, 410
BstMBI GATC 5 cut(s) 39, 138, 508, 696, 898
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 8 cut(s) 96, 259, 575, 594, 617, 774, 804, 813
BstNI CCWGG 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 705
BstSCI CCNGG 3 cut(s) 120, 826, 827
BstUI CGCG 2 cut(s) 758, 788
BstV1I GCAGC 2 cut(s) 249, 598
BstV2I GAAGAC 2 cut(s) 349, 630
BstX2I RGATCY 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 138
BstZI CGGCCG 1 cut(s) 789
BsuRI GGCC 4 cut(s) 253, 293, 791, 833
BtsCI GGATG 1 cut(s) 713
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 7 cut(s) 118, 277, 595, 762, 766, 779, 796
CciNI GCGGCCGC 1 cut(s) 789
CfoI GCGC 2 cut(s) 590, 760
Cfr13I GGNCC 3 cut(s) 205, 373, 831
Cfr9I CCCGGG 1 cut(s) 827
CseI GACGC 2 cut(s) 592, 794
Csp6I GTAC 2 cut(s) 691, 890
CviAII CATG 3 cut(s) 242, 397, 682
CviQI GTAC 2 cut(s) 691, 890
DdeI CTNAG 3 cut(s) 268, 462, 739
DpnI GATC 5 cut(s) 41, 140, 510, 698, 900
DpnII GATC 5 cut(s) 39, 138, 508, 696, 898
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 3 cut(s) 251, 291, 789
EagI CGGCCG 1 cut(s) 789
EciI GGCGGA 3 cut(s) 13, 20, 635
EclXI CGGCCG 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 205, 373
Eco52I CGGCCG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 827
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 831
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 245, 400, 685
FaiI YATR 5 cut(s) 243, 398, 527, 683, 726
FaqI GGGAC 3 cut(s) 52, 299, 849
FatI CATG 3 cut(s) 241, 396, 681
FauI CCCGC 9 cut(s) 125, 180, 230, 240, 478, 728, 753, 769, 821
FblI GTMKAC 3 cut(s) 105, 327, 560
FokI GGATG 1 cut(s) 700
FspBI CTAG 1 cut(s) 629
GlaI GCGC 2 cut(s) 589, 759
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 4 cut(s) 253, 293, 791, 833
HapII CCGG 2 cut(s) 828, 881
HgaI GACGC 2 cut(s) 592, 794
HhaI GCGC 2 cut(s) 590, 760
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 245, 400, 685
Hin6I GCGC 2 cut(s) 588, 758
HinP1I GCGC 2 cut(s) 588, 758
HincII GTYRAC 4 cut(s) 106, 196, 328, 561
HindII GTYRAC 4 cut(s) 106, 196, 328, 561
HinfI GANTC 7 cut(s) 44, 50, 125, 210, 351, 417, 823
HpaII CCGG 2 cut(s) 828, 881
HphI GGTGA 3 cut(s) 50, 103, 665
Hpy166II GTNNAC 5 cut(s) 106, 151, 196, 328, 561
Hpy188I TCNGA 4 cut(s) 49, 508, 820, 898
Hpy188III TCNNGA 4 cut(s) 142, 485, 494, 881
Hpy8I GTNNAC 5 cut(s) 106, 151, 196, 328, 561
Hpy99I CGWCG 8 cut(s) 107, 110, 329, 562, 565, 608, 776, 788
HpyAV CCTTC 2 cut(s) 445, 500
HpyCH4III ACNGT 4 cut(s) 103, 373, 558, 565
HpyCH4IV ACGT 3 cut(s) 108, 704, 862
HpyCH4V TGCA 1 cut(s) 798
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 259, 575, 594, 617, 774, 804, 813
HpyF3I CTNAG 3 cut(s) 268, 462, 739
HpySE526I ACGT 3 cut(s) 108, 704, 862
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 245, 400, 685
HspAI GCGC 2 cut(s) 588, 758
Kpn2I TCCGGA 1 cut(s) 880
Kzo9I GATC 5 cut(s) 39, 138, 508, 696, 898
LmnI GCTCC 8 cut(s) 230, 304, 385, 428, 471, 635, 821, 847
Lsp1109I GCAGC 2 cut(s) 249, 598
MaeI CTAG 1 cut(s) 629
MaeII ACGT 3 cut(s) 108, 704, 862
MaeIII GTNAC 4 cut(s) 92, 109, 427, 671
MalI GATC 5 cut(s) 41, 140, 510, 698, 900
MbiI CCGCTC 5 cut(s) 175, 225, 423, 638, 816
MboI GATC 5 cut(s) 39, 138, 508, 696, 898
MboII GAAGA 5 cut(s) 331, 349, 468, 495, 635
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 585, 783
MluCI AATT 1 cut(s) 870
MlyI GAGTC 4 cut(s) 38, 44, 119, 411
MmeI TCCRAC 1 cut(s) 72
MroI TCCGGA 1 cut(s) 880
MseI TTAA 1 cut(s) 836
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 262, 593
MspI CCGG 2 cut(s) 828, 881
MspR9I CCNGG 3 cut(s) 122, 828, 829
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 758, 788
MwoI GCNNNNNNNGC 8 cut(s) 96, 259, 575, 594, 617, 774, 804, 813
NciI CCSGG 2 cut(s) 828, 829
NdeII GATC 5 cut(s) 39, 138, 508, 696, 898
NlaIII CATG 3 cut(s) 245, 400, 685
NlaIV GGNNCC 3 cut(s) 306, 832, 849
NmuCI GTSAC 4 cut(s) 92, 109, 427, 671
NotI GCGGCCGC 1 cut(s) 789
NspV TTCGAA 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PfeI GAWTC 3 cut(s) 210, 351, 823
PflMI CCANNNNNTGG 3 cut(s) 135, 382, 682
PleI GAGTC 4 cut(s) 38, 44, 119, 411
PmaCI CACGTG 1 cut(s) 705
PmlI CACGTG 1 cut(s) 705
PpsI GAGTC 4 cut(s) 38, 44, 119, 411
Ppu21I YACGTR 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 120
PspCI CACGTG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 306, 832, 849
PspPI GGNCC 3 cut(s) 205, 373, 831
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 2 cut(s) 692, 891
RsaNI GTAC 2 cut(s) 691, 890
RseI CAYNNNNRTG 1 cut(s) 530
SalI GTCGAC 3 cut(s) 104, 326, 559
SaqAI TTAA 1 cut(s) 836
Sau3AI GATC 5 cut(s) 39, 138, 508, 696, 898
Sau96I GGNCC 3 cut(s) 205, 373, 831
SchI GAGTC 4 cut(s) 38, 44, 119, 411
ScrFI CCNGG 3 cut(s) 122, 828, 829
SduI GDGCHC 2 cut(s) 585, 783
SfuI TTCGAA 1 cut(s) 360
SgrDI CGTCGACG 2 cut(s) 104, 559
SinI GGWCC 2 cut(s) 205, 373
SmaI CCCGGG 1 cut(s) 829
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 1 cut(s) 870
SspMI CTAG 1 cut(s) 629
StyD4I CCNGG 3 cut(s) 120, 826, 827
TaaI ACNGT 4 cut(s) 103, 373, 558, 565
TaiI ACGT 3 cut(s) 111, 707, 865
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 870
TatI WGTACW 1 cut(s) 889
TfiI GAWTC 3 cut(s) 210, 351, 823
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 4 cut(s) 92, 109, 427, 671
TseI GCWGC 2 cut(s) 262, 611
Tsp45I GTSAC 4 cut(s) 92, 109, 427, 671
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 4 cut(s) 181, 415, 741, 891
TspMI CCCGGG 1 cut(s) 827
TspRI CASTG 1 cut(s) 276
Van91I CCANNNNNTGG 3 cut(s) 135, 382, 682
VpaK11BI GGWCC 2 cut(s) 205, 373
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 870
XmaI CCCGGG 1 cut(s) 827
XmiI GTMKAC 3 cut(s) 105, 327, 560
XspI CTAG 1 cut(s) 629
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.