RLG00000015079

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013602
Physical Location & Seq
Forward (+)
61439127 .. 61440720
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015079

Sequence Viewer

Length: 696 bp
ATGTCTTCTTCTTCCTCCTCCTCCGCCCTCCGCCGCCTGATAGACTCCGACTCCCATCACCTCCCGTCCCCTAACTACCTCTCCCTCTGCCGTGACCGCACCGTCGACGTCACCGCCCGTCAGGACTCCATCAACTGGATCTTGAAAGTCCACTCCCACTACCGCTTTGCCCCGCTCACGGCGTTCCTCTCCGTCAACTACTACGACCGTTTCCTCTCCACCCGCTCCCTCCCGCCACAGCATGGGCGGTGGCCGTTTCAGCTGCTCTCGGTGGCGTGCTTGTCTTTAGCGGCCAAGATGGAGGAGCCTAATGTCCCCTACATCGTGGACCTCCAAATCTTCGAGCCAAGATTCGTCTTCGAACCCAAAACGGTCCAAAGAATGGAGCTTTTGGTCATGTCCAGTCTCAACTGGAGACTCCGCTCCGTCACACCCTTCGATTTCCTCCCCCATTTCATCTCTGAGCTCCCGGCTTCTTCTCCTCTCGACCTTCTTGAGGCTTCTTCTGATCTGGTTCTCAAAACCATACGAGTGATTGATTTCTTGGGTTTTACACCGTCGACGCTGGCGGCGGCGGCTGTGCTCTGCGCCGCTGGCGTAAGTATCGAGTCTGCGGCGGCGGAAGACCAAGCAGGAGCGGTGTTTGACGAAAGAGTAAACAAAGTAATAATCCATGGGTCTGCGAGCAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

232

Amino Acids

25.74

Weight (kDa)

6.15

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 13 - 141 8.7e-30 Cyclin, N-terminal domain
Cyclin_C PF02984 143 - 198 7.1e-06 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 3 cut(s) 135, 242, 382
AccBSI CCGCTC 4 cut(s) 175, 225, 423, 638
AccI GTMKAC 2 cut(s) 105, 560
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 251, 291
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 5 cut(s) 135, 178, 242, 382, 496
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 3 cut(s) 262, 388, 466
AluI AGCT 3 cut(s) 262, 388, 466
Alw21I GWGCWC 2 cut(s) 468, 585
Alw26I GTCTC 2 cut(s) 409, 410
AlwI GGATC 1 cut(s) 146
AoxI GGCC 2 cut(s) 251, 291
ApeKI GCWGC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 2 cut(s) 328, 373
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 50, 103
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 2 cut(s) 328, 373
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 2 cut(s) 349, 630
Bbv12I GWGCWC 2 cut(s) 468, 585
BbvI GCAGC 1 cut(s) 249
BccI CCATC 3 cut(s) 63, 137, 292
BceAI ACGGC 3 cut(s) 75, 195, 238
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 409, 410
BisI GCNGC 9 cut(s) 34, 263, 291, 570, 573, 576, 591, 615, 618
BlsI GCNGC 9 cut(s) 35, 264, 292, 571, 574, 577, 592, 616, 619
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 328, 373
BmgT120I GGNCC 2 cut(s) 328, 373
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 470
BpiI GAAGAC 2 cut(s) 349, 630
BpmI CTGGAG 1 cut(s) 433
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 65, 95
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 178, 242, 382, 496
Bse1I ACTGG 3 cut(s) 140, 402, 416
BseDI CCNNGG 1 cut(s) 673
BseLI CCNNNNNNNGG 5 cut(s) 135, 178, 242, 382, 496
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 3 cut(s) 140, 402, 416
BseRI GAGGAG 4 cut(s) 7, 10, 317, 471
BseXI GCAGC 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 253, 293
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 468, 585
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 2 cut(s) 52, 299
BslI CCNNNNNNNGG 5 cut(s) 135, 178, 242, 382, 496
BsmAI GTCTC 2 cut(s) 409, 410
BsmFI GGGAC 2 cut(s) 52, 299
BsnI GGCC 2 cut(s) 253, 293
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 468, 585
Bsp143I GATC 2 cut(s) 138, 508
Bsp19I CCATGG 1 cut(s) 673
BspANI GGCC 2 cut(s) 253, 293
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 360
BsrBI CCGCTC 4 cut(s) 175, 225, 423, 638
BsrI ACTGG 3 cut(s) 140, 402, 416
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 2 cut(s) 138, 508
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 673
Bst4CI ACNGT 4 cut(s) 103, 209, 373, 558
BstACI GRCGYC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 4 cut(s) 277, 567, 595, 685
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 1 cut(s) 673
BstENI CCTNNNNNAGG 1 cut(s) 494
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 2 cut(s) 141, 511
BstMAI GTCTC 2 cut(s) 409, 410
BstMBI GATC 2 cut(s) 138, 508
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 4 cut(s) 96, 259, 575, 594
BstSCI CCNGG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 2 cut(s) 349, 630
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 2 cut(s) 253, 293
BtgI CCRYGG 1 cut(s) 673
Cac8I GCNNGC 4 cut(s) 277, 567, 595, 685
CfoI GCGC 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 328, 373
CseI GACGC 1 cut(s) 571
CviAII CATG 3 cut(s) 242, 397, 674
DdeI CTNAG 1 cut(s) 462
DpnI GATC 2 cut(s) 140, 510
DpnII GATC 2 cut(s) 138, 508
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 251, 291
EciI GGCGGA 3 cut(s) 13, 20, 635
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 328, 373
Eco53kI GAGCTC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 466
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 3 cut(s) 245, 400, 677
FaiI YATR 4 cut(s) 243, 398, 527, 675
FaqI GGGAC 2 cut(s) 52, 299
FatI CATG 3 cut(s) 241, 396, 673
FauI CCCGC 3 cut(s) 180, 230, 240
FblI GTMKAC 2 cut(s) 105, 560
Fnu4HI GCNGC 9 cut(s) 34, 263, 291, 570, 573, 576, 591, 615, 618
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 9 cut(s) 34, 263, 291, 570, 573, 576, 591, 615, 618
GlaI GCGC 1 cut(s) 589
GluI GCNGC 9 cut(s) 34, 263, 291, 570, 573, 576, 591, 615, 618
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 2 cut(s) 253, 293
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 571
HhaI GCGC 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 245, 400, 677
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HincII GTYRAC 3 cut(s) 106, 196, 561
HindII GTYRAC 3 cut(s) 106, 196, 561
HinfI GANTC 6 cut(s) 44, 50, 125, 351, 417, 608
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 50, 103
Hpy166II GTNNAC 6 cut(s) 106, 151, 196, 328, 561, 658
Hpy188I TCNGA 3 cut(s) 49, 463, 508
Hpy188III TCNNGA 4 cut(s) 122, 142, 485, 494
Hpy8I GTNNAC 6 cut(s) 106, 151, 196, 328, 561, 658
Hpy99I CGWCG 4 cut(s) 107, 110, 562, 565
HpyAV CCTTC 2 cut(s) 445, 500
HpyCH4III ACNGT 4 cut(s) 103, 209, 373, 558
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 259, 575, 594
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 245, 400, 677
HspAI GCGC 1 cut(s) 588
Kzo9I GATC 2 cut(s) 138, 508
LmnI GCTCC 6 cut(s) 230, 304, 385, 428, 471, 635
Lsp1109I GCAGC 1 cut(s) 249
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 92, 109, 427
MalI GATC 2 cut(s) 140, 510
MbiI CCGCTC 4 cut(s) 175, 225, 423, 638
MboI GATC 2 cut(s) 138, 508
MboII GAAGA 6 cut(s) 3, 331, 349, 468, 495, 635
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 468, 585
MluCI AATT 1 cut(s) 688
MlyI GAGTC 5 cut(s) 38, 44, 119, 411, 617
MmeI TCCRAC 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 262, 593
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 470
MwoI GCNNNNNNNGC 4 cut(s) 96, 259, 575, 594
NciI CCSGG 1 cut(s) 470
NcoI CCATGG 1 cut(s) 673
NdeII GATC 2 cut(s) 138, 508
NlaIII CATG 3 cut(s) 245, 400, 677
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 3 cut(s) 92, 109, 427
NspV TTCGAA 1 cut(s) 360
PfeI GAWTC 1 cut(s) 351
PflMI CCANNNNNTGG 3 cut(s) 135, 242, 382
PkrI GCNGC 9 cut(s) 35, 264, 292, 571, 574, 577, 592, 616, 619
PleI GAGTC 5 cut(s) 38, 44, 119, 411, 616
PpsI GAGTC 5 cut(s) 38, 44, 119, 411, 616
Psp124BI GAGCTC 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 328, 373
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 530
SacI GAGCTC 1 cut(s) 468
SalI GTCGAC 2 cut(s) 104, 559
SatI GCNGC 9 cut(s) 34, 263, 291, 570, 573, 576, 591, 615, 618
Sau3AI GATC 2 cut(s) 138, 508
Sau96I GGNCC 2 cut(s) 328, 373
SchI GAGTC 5 cut(s) 38, 44, 119, 411, 617
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 468, 585
SetI ASST 8 cut(s) 63, 81, 111, 264, 333, 390, 468, 492
SfuI TTCGAA 1 cut(s) 360
SgrDI CGTCGACG 2 cut(s) 104, 559
SinI GGWCC 2 cut(s) 328, 373
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 1 cut(s) 688
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 4 cut(s) 103, 209, 373, 558
TaiI ACGT 1 cut(s) 111
TaqI TCGA 7 cut(s) 105, 342, 360, 438, 486, 560, 606
TasI AATT 1 cut(s) 688
TauI GCSGC 8 cut(s) 36, 293, 572, 575, 578, 593, 617, 620
TfiI GAWTC 1 cut(s) 351
TseFI GTSAC 3 cut(s) 92, 109, 427
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 3 cut(s) 92, 109, 427
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 2 cut(s) 181, 415
Van91I CCANNNNNTGG 3 cut(s) 135, 242, 382
VpaK11BI GGWCC 2 cut(s) 328, 373
XagI CCTNNNNNAGG 1 cut(s) 494
XmiI GTMKAC 2 cut(s) 105, 560
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.