MD05G1102100.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013602
Physical Location & Seq
Forward (+)
21112959 .. 21114537
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1102100.v1.1.491

Sequence Viewer

Length: 609 bp
ATGCCCTCCCCAACCTACATCACTCGGTTCCGCGACTGTACAATAGATATCATCGCCCGCCAGGACTCCATCAACTGGATCCTAAATGTCCACGCCCACCACCGCTTTTCTCCCCTCACCGCCTTCCTCTCCGTCAACTACTTCGACCGCTTCCTCTCCTCCCACTCTCTCCCGCGACATAGCGGGTCGTGGCCGTCTAAGCTGCTGTCCGTCGCGTGTTTGTCTTTAGCCGCTAAAATGGGGGAGCCAAAGGTCCAGTTCATCCTGGACCTCCAAATCTTCGAGCCCAAGTTTGTCTTCGACCCCAAAACGGTCCAGCGGATGGAGCTCCGGGTCATGTGGATTCTCAATTGGAGGCTCCGATCCATCACCCCCTTCGATTTCCTCCACCATTTTGTCTCCGACCTCTCCTCTTCGTCCTCCTCTCTCCTCTCAGCCTCCTCCGATTTAGTTCTCAGCACCATTCGTGTGATTGACTTCTTGGGTTTCTCTCCATCGACGATTGCGGGGGCGGCTGTGCTCTGCGCCGCCGGTTTAAGCGTCGATTTTGTGGCCGATGGAGATCGCCAAGGGGCGCCGTTTTTCTACGAGAGAGTGAACAAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

203

Amino Acids

22.75

Weight (kDa)

8.53

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 2 - 121 2.7e-23 Cyclin, N-terminal domain
Cyclin_C PF02984 123 - 177 1.5e-06 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 574
AccB7I CCANNNNNTGG 2 cut(s) 75, 322
AccII CGCG 3 cut(s) 33, 175, 215
AclWI GGATC 3 cut(s) 73, 86, 357
AcoI YGGCCR 2 cut(s) 191, 552
AcyI GRCGYC 1 cut(s) 575
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 3 cut(s) 75, 310, 322
AjnI CCWGG 2 cut(s) 60, 264
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 2 cut(s) 202, 328
AluI AGCT 2 cut(s) 202, 328
Alw21I GWGCWC 2 cut(s) 330, 522
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 3 cut(s) 73, 86, 357
AoxI GGCC 2 cut(s) 191, 552
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 2 cut(s) 527, 577
AspS9I GGNCC 3 cut(s) 253, 268, 313
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 109, 361
AvaII GGWCC 3 cut(s) 253, 268, 313
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 288, 330
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 330, 522
BbvI GCAGC 1 cut(s) 189
BccI CCATC 5 cut(s) 77, 316, 374, 502, 551
BceAI ACGGC 2 cut(s) 178, 562
BciT130I CCWGG 2 cut(s) 62, 266
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 578
BisI GCNGC 4 cut(s) 203, 231, 513, 528
BlsI GCNGC 4 cut(s) 204, 232, 514, 529
Bme1390I CCNGG 3 cut(s) 62, 266, 332
Bme18I GGWCC 3 cut(s) 253, 268, 313
BmgT120I GGNCC 3 cut(s) 253, 268, 313
BmiI GGNNCC 5 cut(s) 29, 80, 246, 359, 576
BmrFI CCNGG 3 cut(s) 62, 266, 332
BpiI GAAGAC 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 568
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 310, 322
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 80, 256
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 62, 266
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 2 cut(s) 261, 327
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 3 cut(s) 75, 310, 322
BseMII CTCAG 2 cut(s) 447, 469
BseNI ACTGG 2 cut(s) 80, 256
BseRI GAGGAG 5 cut(s) 148, 400, 412, 419, 430
BseXI GCAGC 1 cut(s) 189
Bsh1236I CGCG 3 cut(s) 33, 175, 215
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 193, 554
BshNI GGYRCC 1 cut(s) 574
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 330, 522
BsiSI CCGG 2 cut(s) 331, 531
BslI CCNNNNNNNGG 3 cut(s) 75, 310, 322
BsmAI GTCTC 1 cut(s) 403
BsnI GGCC 2 cut(s) 193, 554
Bsp1286I GDGCHC 3 cut(s) 288, 330, 522
Bsp1407I TGTACA 1 cut(s) 38
Bsp143I GATC 3 cut(s) 78, 362, 562
BspANI GGCC 2 cut(s) 193, 554
BspCNI CTCAG 2 cut(s) 446, 468
BspFNI CGCG 3 cut(s) 33, 175, 215
BspLI GGNNCC 5 cut(s) 29, 80, 246, 359, 576
BspPI GGATC 3 cut(s) 73, 86, 357
BspT107I GGYRCC 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 530
BsrGI TGTACA 1 cut(s) 38
BsrI ACTGG 2 cut(s) 80, 256
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 3 cut(s) 78, 362, 562
BssNI GRCGYC 1 cut(s) 575
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 62, 266
Bst4CI ACNGT 2 cut(s) 38, 313
Bst6I CTCTTC 1 cut(s) 418
BstACI GRCGYC 1 cut(s) 575
BstAUI TGTACA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 198, 433, 455
BstF5I GGATG 2 cut(s) 261, 327
BstFNI CGCG 3 cut(s) 33, 175, 215
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 2 cut(s) 527, 577
BstKTI GATC 3 cut(s) 81, 365, 565
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 3 cut(s) 78, 362, 562
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 199, 325, 512
BstNI CCWGG 2 cut(s) 62, 266
BstSCI CCNGG 3 cut(s) 60, 264, 330
BstUI CGCG 3 cut(s) 33, 175, 215
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 2 cut(s) 193, 554
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 261, 327
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 527, 577
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 253, 268, 313
CseI GACGC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 337
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 3 cut(s) 198, 433, 455
DinI GGCGCC 1 cut(s) 576
DpnI GATC 3 cut(s) 80, 364, 564
DpnII GATC 3 cut(s) 78, 362, 562
EaeI YGGCCR 2 cut(s) 191, 552
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 2 cut(s) 288, 330
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 3 cut(s) 253, 268, 313
Eco53kI GAGCTC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 60, 264
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 288, 330
EgeI GGCGCC 1 cut(s) 576
EheI GGCGCC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 1 cut(s) 340
FaiI YATR 3 cut(s) 180, 338, 607
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 1 cut(s) 336
FauI CCCGC 4 cut(s) 65, 176, 180, 499
Fnu4HI GCNGC 4 cut(s) 203, 231, 513, 528
FokI GGATG 2 cut(s) 248, 334
FriOI GRGCYC 2 cut(s) 288, 330
Fsp4HI GCNGC 4 cut(s) 203, 231, 513, 528
GlaI GCGC 2 cut(s) 526, 576
GluI GCNGC 4 cut(s) 203, 231, 513, 528
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 2 cut(s) 193, 554
HapII CCGG 2 cut(s) 331, 531
HgaI GACGC 1 cut(s) 529
HhaI GCGC 2 cut(s) 527, 577
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 2 cut(s) 525, 575
HinP1I GCGC 2 cut(s) 525, 575
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 65, 343
HpaII CCGG 2 cut(s) 331, 531
HphI GGTGA 2 cut(s) 109, 361
Hpy166II GTNNAC 3 cut(s) 91, 136, 598
Hpy188I TCNGA 3 cut(s) 362, 403, 445
Hpy8I GTNNAC 3 cut(s) 91, 136, 598
Hpy99I CGWCG 3 cut(s) 215, 502, 545
HpyAV CCTTC 2 cut(s) 133, 385
HpyCH4III ACNGT 2 cut(s) 38, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 325, 512
HpyF3I CTNAG 3 cut(s) 198, 433, 455
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 2 cut(s) 525, 575
KasI GGCGCC 1 cut(s) 574
Kzo9I GATC 3 cut(s) 78, 362, 562
LmnI GCTCC 4 cut(s) 244, 325, 333, 363
LpnPI CCDG 9 cut(s) 47, 61, 74, 251, 269, 278, 329, 344, 544
Lsp1109I GCAGC 1 cut(s) 189
MalI GATC 3 cut(s) 80, 364, 564
MboI GATC 3 cut(s) 78, 362, 562
MboII GAAGA 3 cut(s) 271, 289, 405
MfeI CAATTG 1 cut(s) 349
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 3 cut(s) 288, 330, 522
MluCI AATT 1 cut(s) 349
Mly113I GGCGCC 1 cut(s) 575
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 426
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 2 cut(s) 331, 531
MspR9I CCNGG 3 cut(s) 62, 266, 332
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 2 cut(s) 62, 266
MvnI CGCG 3 cut(s) 33, 175, 215
MwoI GCNNNNNNNGC 3 cut(s) 199, 325, 512
NarI GGCGCC 1 cut(s) 575
NciI CCSGG 1 cut(s) 332
NdeII GATC 3 cut(s) 78, 362, 562
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 5 cut(s) 29, 80, 246, 359, 576
PfeI GAWTC 1 cut(s) 343
PflMI CCANNNNNTGG 2 cut(s) 75, 322
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 4 cut(s) 204, 232, 514, 529
PleI GAGTC 1 cut(s) 59
PluTI GGCGCC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 60, 264
PspGI CCWGG 2 cut(s) 60, 264
PspN4I GGNNCC 5 cut(s) 29, 80, 246, 359, 576
PspPI GGNCC 3 cut(s) 253, 268, 313
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 467
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 4 cut(s) 203, 231, 513, 528
Sau3AI GATC 3 cut(s) 78, 362, 562
Sau96I GGNCC 3 cut(s) 253, 268, 313
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 3 cut(s) 62, 266, 332
SduI GDGCHC 3 cut(s) 288, 330, 522
SetI ASST 6 cut(s) 17, 204, 255, 273, 330, 408
SfoI GGCGCC 1 cut(s) 576
SinI GGWCC 3 cut(s) 253, 268, 313
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 1 cut(s) 349
SspDI GGCGCC 1 cut(s) 574
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 60, 264, 330
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 2 cut(s) 38, 313
TaqI TCGA 6 cut(s) 144, 282, 300, 378, 497, 543
TasI AATT 1 cut(s) 349
TatI WGTACW 1 cut(s) 38
TauI GCSGC 3 cut(s) 233, 515, 530
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 121, 199
Van91I CCANNNNNTGG 2 cut(s) 75, 322
VpaK11BI GGWCC 3 cut(s) 253, 268, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.