Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

3257625 .. 3258338

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCCTTGCAGGCTCTCAACTCACCCAACACCGCCGCCCTCGGCTTCGACGACGAGCCTAACAACCTCAACAGCCATCACCTCGCCGCCTCCAAGCGTAAGCGCTCCAAGCGGCCGCGTTTCGAGGACTCATCACTTTCCGAGGAGGAGTACATGGCCTTCTGCCTCTTGCTCCTCGCCCGCGGCACCACCAACGCCGCCGACACCACCGTCGCGCAACTCCCACCGCATCCCCCGGCCTCTTACAAGTGCGTCGTCTGCAGCAAGGCTTTCGGGTCTTACCAGGCTCTCGGCGGCCACAAGGCTAGCCACCGCAAGTCCGACTCCACCGTCTCCTCCGCCGTCAAGGTTGAAACCCCGGCTGTCACCGCCGTTAGCGGGAGGAGCCACGAGTGCACCATCTGCCACAAGTGTTTTCCGACCGGGCAGGCCTTGGGAGGACACAAGCGCTGCCACTACGACGGAGGAAGCAGCGCCACCAACAGCGCCGTCACGACGGTTTCCGAAGGCGGTGGTGGGTCTTCGAGCCACAGCCAGAGTCAGAGCCAGCGTGGGTTCGTGCTGGACCTGAACTTGCCTGCTGAGCCGGAAGTGGTGCTACAAGTGTGGACCGGAGTTGACAAGAAGAAGGATCCTCAAGTCTCCGCCGAGCAGGAGGAGGTGCAGAGTCCGATGCCGGAGAAGAAGCCGCGTCTGACATTGGGGCGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

238

Amino Acids

25.27

Weight (kDa)

8.15

Isoelectric Point (pI)

70.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	82 - 107	5.8e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	130 - 154	5.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	209, 329
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	5 cut(s)	118, 183, 215, 691, 708
AclWI	GGATC	2 cut(s)	626, 639
AcoI	YGGCCR	2 cut(s)	113, 295
AfaI	GTAC	1 cut(s)	152
AfeI	AGCGCT	2 cut(s)	104, 449
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	282
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	337, 646
Alw44I	GTGCAC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	626, 639
Aor51HI	AGCGCT	2 cut(s)	104, 449
AoxI	GGCC	6 cut(s)	3, 113, 156, 237, 295, 429
ApaLI	GTGCAC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	261, 450, 471
AspLEI	GCGC	6 cut(s)	105, 217, 450, 476, 488, 708
AspS9I	GGNCC	2 cut(s)	565, 609
AsuC2I	CCSGG	3 cut(s)	236, 359, 424
AsuHPI	GGTGA	3 cut(s)	15, 71, 358
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	565, 609
BaeGI	GKGCMC	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	4 cut(s)	143, 175, 582, 614
BauI	CACGAG	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	273, 437, 483
BccI	CCATC	2 cut(s)	84, 407
BceAI	ACGGC	3 cut(s)	326, 356, 473
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	3 cut(s)	236, 359, 424
BcoDI	GTCTC	2 cut(s)	337, 646
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	259
BfoI	RGCGCY	4 cut(s)	106, 451, 477, 489
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	582
Bme1390I	CCNGG	4 cut(s)	236, 284, 359, 424
Bme18I	GGWCC	2 cut(s)	565, 609
BmgT120I	GGNCC	2 cut(s)	565, 609
BmiI	GGNNCC	3 cut(s)	187, 386, 633
BmrFI	CCNGG	4 cut(s)	236, 284, 359, 424
BmsI	GCATC	2 cut(s)	238, 663
BmtI	GCTAGC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	621
BpuMI	CCSGG	3 cut(s)	236, 359, 424
BsaJI	CCNNGG	6 cut(s)	40, 141, 181, 234, 357, 432
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	6 cut(s)	40, 141, 181, 234, 357, 432
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	573
BseRI	GAGGAG	6 cut(s)	158, 161, 164, 325, 397, 671
BseSI	GKGCMC	1 cut(s)	398
BseX3I	CGGCCG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	273, 437, 483
BsgI	GTGCAG	1 cut(s)	683
Bsh1236I	CGCG	5 cut(s)	118, 183, 215, 691, 708
Bsh1285I	CGRYCG	2 cut(s)	116, 423
BshFI	GGCC	6 cut(s)	5, 115, 158, 239, 297, 431
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	116, 423
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	6 cut(s)	236, 359, 423, 587, 612, 677
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	337, 646
BsmBI	CGTCTC	1 cut(s)	337
BsnI	GGCC	6 cut(s)	5, 115, 158, 239, 297, 431
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	631
Bsp1720I	GCTNAGC	1 cut(s)	582
BspANI	GGCC	6 cut(s)	5, 115, 158, 239, 297, 431
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	5 cut(s)	118, 183, 215, 691, 708
BspLI	GGNNCC	3 cut(s)	187, 386, 633
BspMAI	CTGCAG	1 cut(s)	263
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	626, 639
BspT107I	GGYRCC	1 cut(s)	185
BssECI	CCNNGG	6 cut(s)	40, 141, 181, 234, 357, 432
BssMI	GATC	1 cut(s)	631
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	211, 331, 499
BstAPI	GCANNNNNTGC	1 cut(s)	402
BstC8I	GCNNGC	6 cut(s)	12, 181, 307, 429, 548, 579
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	5 cut(s)	118, 183, 215, 691, 708
BstH2I	RGCGCY	4 cut(s)	106, 451, 477, 489
BstHHI	GCGC	6 cut(s)	105, 217, 450, 476, 488, 708
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	2 cut(s)	337, 646
BstMBI	GATC	1 cut(s)	631
BstMCI	CGRYCG	2 cut(s)	116, 423
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 109, 258, 368, 384, 393, 402, 583
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	4 cut(s)	234, 282, 357, 422
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	398
BstUI	CGCG	5 cut(s)	118, 183, 215, 691, 708
BstV1I	GCAGC	3 cut(s)	273, 437, 483
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BstZI	CGGCCG	1 cut(s)	113
BsuRI	GGCC	6 cut(s)	5, 115, 158, 239, 297, 431
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	6 cut(s)	12, 181, 307, 429, 548, 579
CciNI	GCGGCCGC	1 cut(s)	113
CfoI	GCGC	6 cut(s)	105, 217, 450, 476, 488, 708
Cfr13I	GGNCC	2 cut(s)	565, 609
Cfr42I	CCGCGG	1 cut(s)	184
CseI	GACGC	2 cut(s)	241, 680
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
DrdI	GACNNNNNNGTC	2 cut(s)	209, 329
DseDI	GACNNNNNNGTC	2 cut(s)	209, 329
EaeI	YGGCCR	2 cut(s)	113, 295
EagI	CGGCCG	1 cut(s)	113
EciI	GGCGGA	2 cut(s)	328, 634
EclXI	CGGCCG	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	565, 609
Eco47III	AGCGCT	2 cut(s)	104, 449
Eco52I	CGGCCG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	1 cut(s)	157
FaiI	YATR	1 cut(s)	155
FatI	CATG	1 cut(s)	153
FauI	CCCGC	2 cut(s)	188, 371
FokI	GGATG	1 cut(s)	216
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	6 cut(s)	104, 216, 449, 475, 487, 707
HaeII	RGCGCY	4 cut(s)	106, 451, 477, 489
HaeIII	GGCC	6 cut(s)	5, 115, 158, 239, 297, 431
HapII	CCGG	6 cut(s)	236, 359, 423, 587, 612, 677
HgaI	GACGC	2 cut(s)	241, 680
HhaI	GCGC	6 cut(s)	105, 217, 450, 476, 488, 708
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	6 cut(s)	103, 215, 448, 474, 486, 706
HinP1I	GCGC	6 cut(s)	103, 215, 448, 474, 486, 706
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	4 cut(s)	128, 323, 538, 667
HpaII	CCGG	6 cut(s)	236, 359, 423, 587, 612, 677
HphI	GGTGA	3 cut(s)	15, 71, 358
Hpy166II	GTNNAC	3 cut(s)	396, 609, 619
Hpy188I	TCNGA	7 cut(s)	142, 322, 420, 505, 543, 672, 696
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	3 cut(s)	396, 609, 619
Hpy99I	CGWCG	6 cut(s)	53, 56, 215, 257, 464, 499
HpyAV	CCTTC	3 cut(s)	169, 500, 622
HpyCH4III	ACNGT	3 cut(s)	211, 331, 499
HpyCH4V	TGCA	4 cut(s)	10, 261, 396, 664
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 109, 258, 368, 384, 393, 402, 583
HpyF3I	CTNAG	1 cut(s)	582
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	6 cut(s)	103, 215, 448, 474, 486, 706
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	631
LmnI	GCTCC	3 cut(s)	110, 177, 384
Lsp1109I	GCAGC	3 cut(s)	273, 437, 483
LweI	GCATC	2 cut(s)	238, 663
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	364, 490
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	3 cut(s)	513, 637, 694
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	398
MlyI	GAGTC	4 cut(s)	122, 317, 547, 676
MmeI	TCCRAC	2 cut(s)	345, 443
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	6 cut(s)	236, 359, 423, 587, 612, 677
MspR9I	CCNGG	4 cut(s)	236, 284, 359, 424
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	5 cut(s)	118, 183, 215, 691, 708
MwoI	GCNNNNNNNGC	8 cut(s)	11, 109, 258, 368, 384, 393, 402, 583
NciI	CCSGG	3 cut(s)	236, 359, 424
NdeII	GATC	1 cut(s)	631
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	187, 386, 633
NmeAIII	GCCGAG	3 cut(s)	21, 270, 673
NmuCI	GTSAC	2 cut(s)	364, 490
NotI	GCGGCCGC	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PleI	GAGTC	4 cut(s)	122, 317, 546, 675
PpsI	GAGTC	4 cut(s)	122, 317, 546, 675
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	187, 386, 633
PspPI	GGNCC	2 cut(s)	565, 609
PstI	CTGCAG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacII	CCGCGG	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	2 cut(s)	565, 609
SchI	GAGTC	4 cut(s)	122, 317, 547, 676
ScrFI	CCNGG	4 cut(s)	236, 284, 359, 424
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	5 cut(s)	69, 84, 351, 570, 663
SfaNI	GCATC	2 cut(s)	238, 663
SfcI	CTRYAG	1 cut(s)	259
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	565, 609
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
SseBI	AGGCCT	1 cut(s)	431
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	4 cut(s)	234, 282, 357, 422
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	211, 331, 499
TaqI	TCGA	3 cut(s)	48, 123, 524
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	8 cut(s)	38, 89, 115, 118, 186, 200, 297, 691
TseFI	GTSAC	2 cut(s)	364, 490
TseI	GCWGC	3 cut(s)	261, 450, 471
Tsp45I	GTSAC	2 cut(s)	364, 490
TspGWI	ACGGA	1 cut(s)	477
VneI	GTGCAC	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	565, 609
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.