Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Forward (+)

60655357 .. 60656112

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCTTGCAGGCTCTCAACTCCCCAAACACCGCCTCTCTCGGCGGCTTCGAAGAGGTGGAGCCTAACCGCAGCATGAACCACCACCTCGCCGCCAAACGTAAGCGCTCCAAGAGGCCGCGCTTCGAGGACTCGCTTTCTGAAGAGGAGTACATGGCTTTCTGTCTTCTCTTGCTTGCTCGTGGCGGCACAACCAACGCCGCCGACACTACCGCTACCACTACCGCCGCCCAACTGCCGCCGCATCCCCCGGCTGCTTCTTACAGGTGTGTTGTCTGCAGCAAGACTTTCGGCTCCTACCAGGCTCTTGGGGGCCACAAGGCTAGCCACCGCAAGTCTGACGCCACCCCCGCCGTCTCCGCCGCCTTAAACTCCACCGTCAAGACTGAATTCCCGGCTGTCACCGCCGCGAGTGGTGGGAGGACCCACGAGTGCTCCATCTGCCACAAGTGCTTCCCGACCGGGCAGGCCTTGGGAGGACACAAGCGCTGCCACTACGACGGTGGCAGTAGCACCGCCAACAGCGCCGTCACGACGGTTTCCGAAGGAGGCGGTGGATCCTCCAGCCACGGCCAGAGCCAGACTCAGAGCCAGCGTGGGTTCGTACTCGACCTGAACTTGCCTGCTGAGCCGGAAGTGCTACAAGTGTGGACTGGGTTCGACAAGAAGAAGAGTACTCAAGCCTCCGCCGAGCAGGAGGAGGTGCAGAGTCCGATGCCGGAGAAGAAGCCGCGTCTGACATTGGGGCCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

252

Amino Acids

26.56

Weight (kDa)

8.46

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	88 - 113	2.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	143 - 167	4.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	121, 410, 733
AclWI	GGATC	2 cut(s)	552, 565
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	3 cut(s)	152, 606, 676
AfeI	AGCGCT	2 cut(s)	107, 488
AjnI	CCWGG	1 cut(s)	300
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	552, 565
Aor51HI	AGCGCT	2 cut(s)	107, 488
AoxI	GGCC	6 cut(s)	3, 116, 313, 468, 571, 746
ApeKI	GCWGC	4 cut(s)	72, 254, 279, 489
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	4 cut(s)	108, 123, 489, 527
AspS9I	GGNCC	3 cut(s)	313, 423, 746
AsuC2I	CCSGG	3 cut(s)	251, 395, 463
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	557
BauI	CACGAG	2 cut(s)	180, 428
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	84, 241, 291, 476
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	3 cut(s)	338, 512, 586
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	3 cut(s)	251, 395, 463
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	3 cut(s)	109, 490, 528
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	627
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	4 cut(s)	251, 302, 395, 463
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	3 cut(s)	313, 423, 746
BmiI	GGNNCC	6 cut(s)	63, 295, 314, 425, 559, 747
BmrFI	CCNGG	4 cut(s)	251, 302, 395, 463
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	2 cut(s)	253, 705
BmtI	GCTAGC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpmI	CTGGAG	1 cut(s)	547
Bpu1102I	GCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	663
BpuMI	CCSGG	3 cut(s)	251, 395, 463
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	249, 471, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bse1I	ACTGG	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	249, 471, 568
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	3 cut(s)	599, 618, 741
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	2 cut(s)	161, 713
BseXI	GCAGC	4 cut(s)	84, 241, 291, 476
BsgI	GTGCAG	1 cut(s)	725
Bsh1236I	CGCG	3 cut(s)	121, 410, 733
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	6 cut(s)	5, 118, 315, 470, 573, 748
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	5 cut(s)	251, 395, 462, 632, 719
BsmAI	GTCTC	1 cut(s)	361
BsmBI	CGTCTC	1 cut(s)	361
BsnI	GGCC	6 cut(s)	5, 118, 315, 470, 573, 748
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	557
Bsp1720I	GCTNAGC	1 cut(s)	627
BspANI	GGCC	6 cut(s)	5, 118, 315, 470, 573, 748
BspCNI	CTCAG	3 cut(s)	598, 619, 742
BspFNI	CGCG	3 cut(s)	121, 410, 733
BspLI	GGNNCC	6 cut(s)	63, 295, 314, 425, 559, 747
BspMAI	CTGCAG	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	552, 565
BspT104I	TTCGAA	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	3 cut(s)	249, 471, 568
BssMI	GATC	1 cut(s)	557
BssNI	GRCGYC	1 cut(s)	342
BssSI	CACGAG	2 cut(s)	180, 428
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	2 cut(s)	180, 428
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	379, 503, 538
Bst6I	CTCTTC	3 cut(s)	48, 138, 665
BstACI	GRCGYC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	6 cut(s)	12, 177, 325, 468, 593, 624
BstDEI	CTNAG	3 cut(s)	585, 627, 750
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	3 cut(s)	121, 410, 733
BstH2I	RGCGCY	3 cut(s)	109, 490, 528
BstHHI	GCGC	4 cut(s)	108, 123, 489, 527
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	557
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 350, 359, 404, 441, 450, 524, 628, 637
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	4 cut(s)	249, 300, 393, 461
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	3 cut(s)	121, 410, 733
BstV1I	GCAGC	4 cut(s)	84, 241, 291, 476
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	6 cut(s)	5, 118, 315, 470, 573, 748
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	6 cut(s)	12, 177, 325, 468, 593, 624
CfoI	GCGC	4 cut(s)	108, 123, 489, 527
Cfr13I	GGNCC	3 cut(s)	313, 423, 746
CseI	GACGC	2 cut(s)	350, 722
Csp6I	GTAC	3 cut(s)	151, 605, 675
CviAII	CATG	2 cut(s)	76, 154
CviQI	GTAC	3 cut(s)	151, 605, 675
DdeI	CTNAG	3 cut(s)	585, 627, 750
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	3 cut(s)	48, 138, 665
EarI	CTCTTC	3 cut(s)	48, 138, 665
EciI	GGCGGA	2 cut(s)	349, 676
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	423
Eco47III	AGCGCT	2 cut(s)	107, 488
Eco57I	CTGAAG	1 cut(s)	162
EcoO109I	RGGNCCY	2 cut(s)	423, 746
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	2 cut(s)	79, 157
FaiI	YATR	2 cut(s)	77, 155
FatI	CATG	2 cut(s)	75, 153
FauI	CCCGC	1 cut(s)	358
FokI	GGATG	1 cut(s)	231
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	4 cut(s)	107, 122, 488, 526
GsuI	CTGGAG	1 cut(s)	547
HaeII	RGCGCY	3 cut(s)	109, 490, 528
HaeIII	GGCC	6 cut(s)	5, 118, 315, 470, 573, 748
HapII	CCGG	5 cut(s)	251, 395, 462, 632, 719
HgaI	GACGC	2 cut(s)	350, 722
HhaI	GCGC	4 cut(s)	108, 123, 489, 527
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	79, 157
Hin6I	GCGC	4 cut(s)	106, 121, 487, 525
HinP1I	GCGC	4 cut(s)	106, 121, 487, 525
HinfI	GANTC	3 cut(s)	131, 583, 709
HpaII	CCGG	5 cut(s)	251, 395, 462, 632, 719
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	6 cut(s)	142, 340, 544, 588, 714, 738
Hpy188III	TCNNGA	3 cut(s)	382, 457, 532
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	2 cut(s)	503, 538
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	3 cut(s)	379, 503, 538
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	10, 279, 706
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 350, 359, 404, 441, 450, 524, 628, 637
HpyF3I	CTNAG	3 cut(s)	585, 627, 750
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	79, 157
HspAI	GCGC	4 cut(s)	106, 121, 487, 525
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	4 cut(s)	61, 113, 299, 440
Lsp1109I	GCAGC	4 cut(s)	84, 241, 291, 476
LweI	GCATC	2 cut(s)	253, 705
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	400, 529
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MboII	GAAGA	6 cut(s)	65, 155, 158, 679, 682, 736
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	3 cut(s)	125, 577, 718
MseI	TTAA	1 cut(s)	368
MspI	CCGG	5 cut(s)	251, 395, 462, 632, 719
MspR9I	CCNGG	4 cut(s)	251, 302, 395, 463
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	3 cut(s)	121, 410, 733
MwoI	GCNNNNNNNGC	9 cut(s)	11, 350, 359, 404, 441, 450, 524, 628, 637
NciI	CCSGG	3 cut(s)	251, 395, 463
NdeII	GATC	1 cut(s)	557
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	79, 157
NlaIV	GGNNCC	6 cut(s)	63, 295, 314, 425, 559, 747
NmeAIII	GCCGAG	2 cut(s)	21, 715
NmuCI	GTSAC	2 cut(s)	400, 529
NspV	TTCGAA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PleI	GAGTC	3 cut(s)	125, 577, 717
PpsI	GAGTC	3 cut(s)	125, 577, 717
PpuMI	RGGWCCY	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	6 cut(s)	63, 295, 314, 425, 559, 747
PspPI	GGNCC	3 cut(s)	313, 423, 746
PspPPI	RGGWCCY	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	3 cut(s)	152, 606, 676
RsaNI	GTAC	3 cut(s)	151, 605, 675
SaqAI	TTAA	1 cut(s)	368
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	3 cut(s)	313, 423, 746
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	3 cut(s)	125, 577, 718
ScrFI	CCNGG	4 cut(s)	251, 302, 395, 463
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	6 cut(s)	60, 90, 103, 269, 615, 705
SfaNI	GCATC	2 cut(s)	253, 705
SfcI	CTRYAG	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
Sse9I	AATT	1 cut(s)	389
SseBI	AGGCCT	1 cut(s)	470
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	4 cut(s)	249, 300, 393, 461
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	379, 503, 538
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	51, 126, 609, 660
TasI	AATT	1 cut(s)	389
TatI	WGTACW	2 cut(s)	150, 674
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseFI	GTSAC	2 cut(s)	400, 529
TseI	GCWGC	4 cut(s)	72, 254, 279, 489
Tsp45I	GTSAC	2 cut(s)	400, 529
TspDTI	ATGAA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.