Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

8746447 .. 8748333

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCTTGCAGGCTCTCAACTCCCCAAACACCGCCTCTCTCGGCCGCTTCGAAGAGGTGGAGCCTAACCGCAACATGAACCACCACCTCGCCGCGAAACGTAAGCGCTCCAAGAGGCCGCGCTTCGAGGACTCGCTTTCCGAAGAGGAGTACATGGCTTTCTGTCTTCTCTTGCTTGCTCGTGGCGGCACCACCAACGCCACCGACACCACCGCTACCGCTACCGCCGCCGCCCCCAAACTGCCGCCGCATCCCCCGGCTGCTTCTTACAGGTGTGTTGTCTGCAGCAAGACTTTCGGCTCCTACCAGGCTCTTGGGGGCCACAAGGCTAGCCACCGTAAGTCTGAAGCCACCTCCGCCGTCTCCGCCGCCTTAACCGCCACCGTCAAGACTGAAATCCCCACTGTCACCGCCGCGAGTGGTGGGAGGACCCACGAGTGCTCCATCTGCCACAAGTGCTTCCCGACCGGGCAGGCCTTGGGAGGACACAAGCGCTGCCACTACGACGGTGGCAGCAGCACCGCCAACAGCGTCATCACGACTGTTTCCGAAGGCGGCGGTGGATCCTCCAGCCACGGCCAGAGCCAGACTCAGAGCCAGCGTGGGTTCGTACTCGACCTGAACTTGCCTGCTGAGCCGGAAGTGCTACAAGTGTGGACCGGGTTCGACAAGAAGAAGAGTACTCAAGCCTCCGCCGAGCAGGAGGAGGTGCAGAGTCCGATGCCGGAGAAGAAGCCGCGTCTGACATTGGGGCCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

253

Amino Acids

26.86

Weight (kDa)

8.83

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	90 - 115	2.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	145 - 169	4.8e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	4 cut(s)	95, 121, 416, 739
AclWI	GGATC	2 cut(s)	558, 571
AcoI	YGGCCR	2 cut(s)	43, 577
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	3 cut(s)	152, 612, 682
AfeI	AGCGCT	2 cut(s)	107, 494
AjnI	CCWGG	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	558, 571
Aor51HI	AGCGCT	2 cut(s)	107, 494
AoxI	GGCC	7 cut(s)	3, 43, 116, 319, 474, 577, 752
ApeKI	GCWGC	5 cut(s)	260, 285, 495, 513, 516
AspLEI	GCGC	3 cut(s)	108, 123, 495
AspS9I	GGNCC	4 cut(s)	319, 429, 657, 752
AsuC2I	CCSGG	3 cut(s)	257, 469, 661
AsuHPI	GGTGA	1 cut(s)	400
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	429, 657
BamHI	GGATCC	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	2 cut(s)	180, 434
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	5 cut(s)	247, 297, 482, 525, 528
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	2 cut(s)	344, 592
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	3 cut(s)	257, 469, 661
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	283
BfoI	RGCGCY	2 cut(s)	109, 496
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	633
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	4 cut(s)	257, 308, 469, 661
Bme18I	GGWCC	2 cut(s)	429, 657
BmgT120I	GGNCC	4 cut(s)	319, 429, 657, 752
BmiI	GGNNCC	7 cut(s)	63, 190, 301, 320, 431, 565, 753
BmrFI	CCNGG	4 cut(s)	257, 308, 469, 661
BmsI	GCATC	2 cut(s)	259, 711
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	1 cut(s)	553
Bpu1102I	GCTNAGC	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	669
BpuMI	CCSGG	3 cut(s)	257, 469, 661
BsaJI	CCNNGG	3 cut(s)	255, 477, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	255, 477, 574
BseGI	GGATG	1 cut(s)	250
BseMII	CTCAG	3 cut(s)	605, 624, 747
BseRI	GAGGAG	2 cut(s)	161, 719
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	5 cut(s)	247, 297, 482, 525, 528
BsgI	GTGCAG	1 cut(s)	731
Bsh1236I	CGCG	4 cut(s)	95, 121, 416, 739
Bsh1285I	CGRYCG	2 cut(s)	46, 468
BshFI	GGCC	7 cut(s)	5, 45, 118, 321, 476, 579, 754
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	2 cut(s)	46, 468
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	5 cut(s)	257, 468, 638, 660, 725
BsmAI	GTCTC	1 cut(s)	367
BsmBI	CGTCTC	1 cut(s)	367
BsnI	GGCC	7 cut(s)	5, 45, 118, 321, 476, 579, 754
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	563
Bsp1720I	GCTNAGC	1 cut(s)	633
BspANI	GGCC	7 cut(s)	5, 45, 118, 321, 476, 579, 754
BspCNI	CTCAG	3 cut(s)	604, 625, 748
BspFNI	CGCG	4 cut(s)	95, 121, 416, 739
BspLI	GGNNCC	7 cut(s)	63, 190, 301, 320, 431, 565, 753
BspMAI	CTGCAG	1 cut(s)	287
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	558, 571
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	255, 477, 574
BssMI	GATC	1 cut(s)	563
BssSI	CACGAG	2 cut(s)	180, 434
BssT1I	CCWWGG	1 cut(s)	477
Bst2BI	CACGAG	2 cut(s)	180, 434
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	5 cut(s)	338, 385, 406, 509, 544
Bst6I	CTCTTC	3 cut(s)	48, 138, 671
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	6 cut(s)	12, 177, 331, 474, 599, 630
BstDEI	CTNAG	3 cut(s)	591, 633, 756
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	4 cut(s)	95, 121, 416, 739
BstH2I	RGCGCY	2 cut(s)	109, 496
BstHHI	GCGC	3 cut(s)	108, 123, 495
BstKTI	GATC	1 cut(s)	566
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	563
BstMCI	CGRYCG	2 cut(s)	46, 468
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 227, 356, 365, 377, 447, 456, 634, 643
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	255, 306, 467, 659
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	4 cut(s)	95, 121, 416, 739
BstV1I	GCAGC	5 cut(s)	247, 297, 482, 525, 528
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	563
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	7 cut(s)	5, 45, 118, 321, 476, 579, 754
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	6 cut(s)	12, 177, 331, 474, 599, 630
CfoI	GCGC	3 cut(s)	108, 123, 495
Cfr13I	GGNCC	4 cut(s)	319, 429, 657, 752
CseI	GACGC	2 cut(s)	520, 728
Csp6I	GTAC	3 cut(s)	151, 611, 681
CviAII	CATG	2 cut(s)	76, 154
CviQI	GTAC	3 cut(s)	151, 611, 681
DdeI	CTNAG	3 cut(s)	591, 633, 756
DpnI	GATC	1 cut(s)	565
DpnII	GATC	1 cut(s)	563
EaeI	YGGCCR	2 cut(s)	43, 577
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	48, 138, 671
EarI	CTCTTC	3 cut(s)	48, 138, 671
EciI	GGCGGA	3 cut(s)	346, 355, 682
EclXI	CGGCCG	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	429, 657
Eco47III	AGCGCT	2 cut(s)	107, 494
Eco52I	CGGCCG	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	429, 752
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	2 cut(s)	79, 157
FaiI	YATR	2 cut(s)	77, 155
FatI	CATG	2 cut(s)	75, 153
FokI	GGATG	1 cut(s)	237
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	3 cut(s)	107, 122, 494
GsuI	CTGGAG	1 cut(s)	553
HaeII	RGCGCY	2 cut(s)	109, 496
HaeIII	GGCC	7 cut(s)	5, 45, 118, 321, 476, 579, 754
HapII	CCGG	5 cut(s)	257, 468, 638, 660, 725
HgaI	GACGC	2 cut(s)	520, 728
HhaI	GCGC	3 cut(s)	108, 123, 495
Hin1II	CATG	2 cut(s)	79, 157
Hin6I	GCGC	3 cut(s)	106, 121, 493
HinP1I	GCGC	3 cut(s)	106, 121, 493
HinfI	GANTC	3 cut(s)	131, 589, 715
HpaII	CCGG	5 cut(s)	257, 468, 638, 660, 725
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	6 cut(s)	142, 346, 550, 594, 720, 744
Hpy188III	TCNNGA	3 cut(s)	388, 463, 538
Hpy8I	GTNNAC	1 cut(s)	657
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	5 cut(s)	338, 385, 406, 509, 544
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	10, 285, 712
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 227, 356, 365, 377, 447, 456, 634, 643
HpyF3I	CTNAG	3 cut(s)	591, 633, 756
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	79, 157
HspAI	GCGC	3 cut(s)	106, 121, 493
Kzo9I	GATC	1 cut(s)	563
LmnI	GCTCC	4 cut(s)	61, 113, 305, 446
Lsp1109I	GCAGC	5 cut(s)	247, 297, 482, 525, 528
LweI	GCATC	2 cut(s)	259, 711
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	565
MboI	GATC	1 cut(s)	563
MboII	GAAGA	6 cut(s)	65, 155, 158, 685, 688, 742
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	443
MlyI	GAGTC	3 cut(s)	125, 583, 724
MseI	TTAA	1 cut(s)	374
MspI	CCGG	5 cut(s)	257, 468, 638, 660, 725
MspR9I	CCNGG	4 cut(s)	257, 308, 469, 661
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	4 cut(s)	95, 121, 416, 739
MwoI	GCNNNNNNNGC	9 cut(s)	11, 227, 356, 365, 377, 447, 456, 634, 643
NciI	CCSGG	3 cut(s)	257, 469, 661
NdeII	GATC	1 cut(s)	563
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	79, 157
NlaIV	GGNNCC	7 cut(s)	63, 190, 301, 320, 431, 565, 753
NmeAIII	GCCGAG	2 cut(s)	21, 721
NmuCI	GTSAC	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PleI	GAGTC	3 cut(s)	125, 583, 723
PpsI	GAGTC	3 cut(s)	125, 583, 723
PpuMI	RGGWCCY	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	7 cut(s)	63, 190, 301, 320, 431, 565, 753
PspPI	GGNCC	4 cut(s)	319, 429, 657, 752
PspPPI	RGGWCCY	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	3 cut(s)	152, 612, 682
RsaNI	GTAC	3 cut(s)	151, 611, 681
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	1 cut(s)	563
Sau96I	GGNCC	4 cut(s)	319, 429, 657, 752
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	3 cut(s)	125, 583, 724
ScrFI	CCNGG	4 cut(s)	257, 308, 469, 661
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	60, 90, 103, 275, 356, 621, 711
SfaNI	GCATC	2 cut(s)	259, 711
SfcI	CTRYAG	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	2 cut(s)	429, 657
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
SseBI	AGGCCT	1 cut(s)	476
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	4 cut(s)	255, 306, 467, 659
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	5 cut(s)	338, 385, 406, 509, 544
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	51, 126, 615, 666
TatI	WGTACW	2 cut(s)	150, 680
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	5 cut(s)	260, 285, 495, 513, 516
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	429, 657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.