Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017236

Physical Location & Seq

Genomic Coordinates Reverse (-)

11844507 .. 11845525

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAAAGATCTCCGTCTTTCTGTATCTCGACAACCATATCGATCACATATTTTCCGCGTTTTCGCGCACGAGAAATTACGATAAAAATGGCCTTAGAGGCTTTGAAATCCGCGAGTACCACCACTACTCCTTCTCCATCCTTTTCATCGTTTGAAAAGGTGGAGGATCGTCGCCACGGCAATCACCAAATCCACTCCAAAGAGCCATGGGCCAAACGGAAGGGCTCTAAGCGGCCGCGCAGCGAAGACCCGCCAACCGAAGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGCGGCACCACTGATAGCTCTGAATTGCCGCCGCAGCCGCCGTCCCGAGACCTTTCTTACAAGTGCTCTGTTTGCAACAAGGGGTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCACCGCAAGTCCGACTCTTCCGCCGCCGCCGCTTCCGCCGTGACAACAACAAGCGGTAGGACCCACGAGTGCTCTATCTGCCACAAGACCTTCCCCACCGGCCAGGCACTGGGAGGCCACAAGCGCTGTCACTACGACGGCGGCAGCGCGGCCACGAGCGCTGTCACTACTTCCGAAGGCGGCGGTGCGGGGGCTTCCAGCCATAGTCAAAGTCATCAGAGTCAGCGCGGATTTGACCTAAACATGCCGGCGTTGCCGGAGTTCTGGCCAGGGTTCGGCGGGGACAAGAAAAGTCAACTCTCCGGAGAGCAGGAGGTGCAGAGCCCGATGGTGGGAAAGAAGCCGCGGTGGTTGTTGGGTGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

263

Amino Acids

28.29

Weight (kDa)

9.34

Isoelectric Point (pI)

74.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04120
malus_domestica	MD05G1098300.v1.1 MD10G1104100.v1.1
prunus_persica	Prupe.8G142400_v2.0.a1
pyrus_communis	pycom05g09620 pycom10g08950
rosa_chinensis	RchiOBHm_Chr6g0253491
rosa_laevigata	RLG00000015015
rosa_multiflora	Rmu_ssc0000079.1_g000007
rosa_rugosa	Rorug05G0544700
rosa_samantha	Rh6AG059700 Rh6BG053700 Rh6CG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccII	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
AccIII	TCCGGA	1 cut(s)	722
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	4 cut(s)	233, 520, 570, 686
AfaI	GTAC	2 cut(s)	118, 269
AfeI	AGCGCT	2 cut(s)	545, 580
AfiI	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
AgsI	TTSAA	2 cut(s)	106, 155
AjnI	CCWGG	2 cut(s)	522, 688
AluBI	AGCT	2 cut(s)	315, 398
AluI	AGCT	2 cut(s)	315, 398
Alw21I	GWGCWC	2 cut(s)	365, 494
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	722
Aor51HI	AGCGCT	2 cut(s)	545, 580
AoxI	GGCC	8 cut(s)	90, 210, 233, 414, 520, 535, 570, 686
ApeKI	GCWGC	3 cut(s)	240, 331, 564
AspLEI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
AspS9I	GGNCC	2 cut(s)	210, 480
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	227, 746
BauI	CACGAG	3 cut(s)	69, 485, 574
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	365, 494
BbvI	GCAGC	3 cut(s)	252, 343, 576
BccI	CCATC	2 cut(s)	145, 742
BceAI	ACGGC	4 cut(s)	193, 322, 443, 574
BciT130I	CCWGG	2 cut(s)	524, 690
BcoDI	GTCTC	1 cut(s)	339
BfoI	RGCGCY	2 cut(s)	547, 582
BglI	GCCNNNNNGGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	524, 690
Bme18I	GGWCC	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	210, 480
BmiI	GGNNCC	2 cut(s)	304, 482
BmrFI	CCNGG	2 cut(s)	524, 690
BmrI	ACTGGG	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	5 cut(s)	175, 206, 298, 689, 764
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 118, 142, 148
Bsc4I	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
Bse118I	RCCGGY	2 cut(s)	518, 667
Bse1I	ACTGG	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	524, 690
BseCI	ATCGAT	1 cut(s)	41
BseDI	CCNNGG	5 cut(s)	175, 206, 298, 689, 764
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	278, 376
BseX3I	CGGCCG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	252, 343, 576
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	365, 494
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	519, 668, 677, 723
BslFI	GGGAC	2 cut(s)	325, 716
BslI	CCNNNNNNNGG	4 cut(s)	529, 695, 751, 752
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	325, 716
BsnI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
Bso31I	GGTCTC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	4 cut(s)	227, 365, 494, 746
Bsp13I	TCCGGA	1 cut(s)	722
Bsp143I	GATC	3 cut(s)	8, 42, 166
Bsp19I	CCATGG	1 cut(s)	206
BspANI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
BspDI	ATCGAT	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	722
BspFNI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
BspLI	GGNNCC	2 cut(s)	304, 482
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	339
BsrFI	RCCGGY	2 cut(s)	518, 667
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	2 cut(s)	518, 667
BssECI	CCNNGG	5 cut(s)	175, 206, 298, 689, 764
BssMI	GATC	3 cut(s)	8, 42, 166
BssSI	CACGAG	3 cut(s)	69, 485, 574
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	3 cut(s)	69, 485, 574
Bst2UI	CCWGG	2 cut(s)	524, 690
Bst6I	CTCTTC	2 cut(s)	255, 442
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	4 cut(s)	294, 298, 418, 669
BstDEI	CTNAG	2 cut(s)	94, 228
BstDSI	CCRYGG	4 cut(s)	175, 206, 298, 764
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
BstH2I	RGCGCY	2 cut(s)	547, 582
BstHHI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
BstKTI	GATC	3 cut(s)	11, 45, 169
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	8, 42, 166
BstMCI	CGRYCG	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	524, 690
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	2 cut(s)	522, 688
BstUI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
BstV1I	GCAGC	3 cut(s)	252, 343, 576
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	8
BstZI	CGGCCG	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	41
BsuRI	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
BsuTUI	ATCGAT	1 cut(s)	41
BtgI	CCRYGG	4 cut(s)	175, 206, 298, 764
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	306, 527
Cac8I	GCNNGC	4 cut(s)	294, 298, 418, 669
CaiI	CAGNNNCTG	1 cut(s)	529
CciNI	GCGGCCGC	1 cut(s)	233
CfoI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
Cfr10I	RCCGGY	2 cut(s)	518, 667
Cfr13I	GGNCC	2 cut(s)	210, 480
Cfr42I	CCGCGG	2 cut(s)	301, 767
ClaI	ATCGAT	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	117, 268
CviAII	CATG	3 cut(s)	207, 289, 664
CviQI	GTAC	2 cut(s)	117, 268
DdeI	CTNAG	2 cut(s)	94, 228
DpnI	GATC	3 cut(s)	10, 44, 168
DpnII	GATC	3 cut(s)	8, 42, 166
EaeI	YGGCCR	4 cut(s)	233, 520, 570, 686
EagI	CGGCCG	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	255, 442
EarI	CTCTTC	2 cut(s)	255, 442
EciI	GGCGGA	3 cut(s)	420, 430, 445
EclXI	CGGCCG	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	227, 746
Eco31I	GGTCTC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	480
Eco47III	AGCGCT	2 cut(s)	545, 580
Eco52I	CGGCCG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	522, 688
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	227, 746
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	210, 292, 667
FaiI	YATR	6 cut(s)	38, 49, 208, 290, 624, 665
FaqI	GGGAC	2 cut(s)	325, 716
FatI	CATG	3 cut(s)	206, 288, 663
FauI	CCCGC	4 cut(s)	258, 305, 601, 692
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	2 cut(s)	227, 746
GlaI	GCGC	6 cut(s)	67, 239, 545, 568, 580, 647
HaeII	RGCGCY	2 cut(s)	547, 582
HaeIII	GGCC	8 cut(s)	92, 212, 235, 416, 522, 537, 572, 688
HapII	CCGG	4 cut(s)	519, 668, 677, 723
HhaI	GCGC	6 cut(s)	68, 240, 546, 569, 581, 648
Hin1II	CATG	3 cut(s)	210, 292, 667
Hin6I	GCGC	6 cut(s)	66, 238, 544, 567, 579, 646
HinP1I	GCGC	6 cut(s)	66, 238, 544, 567, 579, 646
HincII	GTYRAC	1 cut(s)	716
HindII	GTYRAC	1 cut(s)	716
HinfI	GANTC	2 cut(s)	434, 640
HpaII	CCGG	4 cut(s)	519, 668, 677, 723
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	4 cut(s)	319, 433, 595, 639
Hpy188III	TCNNGA	3 cut(s)	28, 342, 723
Hpy8I	GTNNAC	1 cut(s)	716
Hpy99I	CGWCG	2 cut(s)	174, 560
HpyAV	CCTTC	4 cut(s)	141, 214, 520, 590
HpyCH4V	TGCA	2 cut(s)	372, 739
HpyF3I	CTNAG	2 cut(s)	94, 228
Hsp92II	CATG	3 cut(s)	210, 292, 667
HspAI	GCGC	6 cut(s)	66, 238, 544, 567, 579, 646
Kpn2I	TCCGGA	1 cut(s)	722
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
KspI	CCGCGG	2 cut(s)	301, 767
Kzo9I	GATC	3 cut(s)	8, 42, 166
Lsp1109I	GCAGC	3 cut(s)	252, 343, 576
MaeIII	GTNAC	3 cut(s)	460, 548, 583
MalI	GATC	3 cut(s)	10, 44, 168
MboI	GATC	3 cut(s)	8, 42, 166
MboII	GAAGA	3 cut(s)	257, 272, 429
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	4 cut(s)	227, 365, 494, 746
MlsI	TGGCCA	1 cut(s)	688
MluCI	AATT	2 cut(s)	75, 320
MluNI	TGGCCA	1 cut(s)	688
MlyI	GAGTC	2 cut(s)	428, 649
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	8 cut(s)	91, 157, 256, 281, 293, 397, 527, 727
Mox20I	TGGCCA	1 cut(s)	688
MroI	TCCGGA	1 cut(s)	722
MroNI	GCCGGC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	688
MseI	TTAA	1 cut(s)	787
Msp20I	TGGCCA	1 cut(s)	688
MspA1I	CMGCKG	2 cut(s)	300, 766
MspI	CCGG	4 cut(s)	519, 668, 677, 723
MspR9I	CCNGG	2 cut(s)	524, 690
MvaI	CCWGG	2 cut(s)	524, 690
MvnI	CGCG	8 cut(s)	58, 66, 113, 238, 300, 569, 648, 766
NaeI	GCCGGC	1 cut(s)	669
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	8, 42, 166
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	3 cut(s)	210, 292, 667
NlaIV	GGNNCC	2 cut(s)	304, 482
NmuCI	GTSAC	3 cut(s)	460, 548, 583
NotI	GCGGCCGC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	667
PdiI	GCCGGC	1 cut(s)	669
PflMI	CCANNNNNTGG	1 cut(s)	529
PleI	GAGTC	2 cut(s)	428, 648
PpsI	GAGTC	2 cut(s)	428, 648
PpuMI	RGGWCCY	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	522, 688
PspGI	CCWGG	2 cut(s)	522, 688
PspN4I	GGNNCC	2 cut(s)	304, 482
PspPI	GGNCC	2 cut(s)	210, 480
PspPPI	RGGWCCY	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	2 cut(s)	118, 269
RsaNI	GTAC	2 cut(s)	117, 268
SacII	CCGCGG	2 cut(s)	301, 767
SaqAI	TTAA	1 cut(s)	787
Sau3AI	GATC	3 cut(s)	8, 42, 166
Sau96I	GGNCC	2 cut(s)	210, 480
SchI	GAGTC	2 cut(s)	428, 649
ScrFI	CCNGG	2 cut(s)	524, 690
SduI	GDGCHC	4 cut(s)	227, 365, 494, 746
SetI	ASST	8 cut(s)	162, 273, 317, 351, 400, 512, 660, 738
Sfr303I	CCGCGG	2 cut(s)	301, 767
SgrBI	CCGCGG	2 cut(s)	301, 767
SinI	GGWCC	1 cut(s)	480
Sse9I	AATT	2 cut(s)	75, 320
StyD4I	CCNGG	2 cut(s)	522, 688
StyI	CCWWGG	1 cut(s)	206
TaqI	TCGA	2 cut(s)	29, 41
TasI	AATT	2 cut(s)	75, 320
Tru1I	TTAA	1 cut(s)	787
Tru9I	TTAA	1 cut(s)	787
TscAI	CASTG	2 cut(s)	313, 534
TseFI	GTSAC	3 cut(s)	460, 548, 583
TseI	GCWGC	3 cut(s)	240, 331, 564
Tsp45I	GTSAC	3 cut(s)	460, 548, 583
TspDTI	ATGAA	2 cut(s)	17, 135
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	313, 534
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	480
XceI	RCATGY	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.